Author results

5GUW
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COMPLEX OF CYTOCHROME CD1 NITRITE REDUCTASE AND NITRIC OXIDE REDUCTASE IN DENITRIFICATION OF PSEUDOMONAS AERUGINOSA
分子名称:Nitric oxide reductase subunit C, Nitric oxide reductase subunit B, Nitrite reductase, ...
著者Terasaka, E., Sugimoto, H., Shiro, Y., Tosha, T.
登録日2016-08-31
公開日2017-08-16
最終更新日2017-09-27
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Dynamics of nitric oxide controlled by protein complex in bacterial system
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5GUX
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CYTOCHROME C-DEPENDENT NITRIC OXIDE REDUCTASE (CNOR) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH XENON
分子名称:Antibody fab fragment light chain, Antibody fab fragment heavy chain, Nitric oxide reductase subunit B, ...
著者Ishii, S., Terasaka, E., Sugimoto, H., Shiro, Y., Tosha, T.
登録日2016-08-31
公開日2017-08-16
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Dynamics of nitric oxide controlled by protein complex in bacterial system.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
1JFB
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X-RAY STRUCTURE OF NITRIC OXIDE REDUCTASE (CYTOCHROME P450NOR) IN THE FERRIC RESTING STATE AT ATOMIC RESOLUTION
分子名称:nitric-oxide reductase cytochrome P450 55A1, PROTOPORPHYRIN IX CONTAINING FE, GLYCEROL
著者Shimizu, H., Adachi, S., Park, S.Y., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-06-20
公開日2001-12-20
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献X-ray structure of nitric oxide reductase (cytochrome P450nor) at atomic resolution.
Acta Crystallogr.,Sect.D, 58, 2002
1JFC
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X-RAY STRUCTURE OF NITRIC OXIDE REDUCTASE (CYTOCHROME P450NOR) IN THE FERROUS CO STATE AT ATOMIC RESOLUTION
分子名称:nitric-oxide reductase Cytochrome P450 55A1, PROTOPORPHYRIN IX CONTAINING FE, CARBON MONOXIDE, ...
著者Shimizu, H., Adachi, S., Park, S.Y., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-06-20
公開日2001-12-20
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献X-ray structure of nitric oxide reductase (cytochrome P450nor) at atomic resolution.
Acta Crystallogr.,Sect.D, 58, 2002
1EW0
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CRYSTAL STRUCTURE ANALYSIS OF THE SENSOR DOMAIN OF RMFIXL(FERROUS FORM)
分子名称:FIXL, PROTOPORPHYRIN IX CONTAINING FE
著者Miyatake, H., Mukai, M., Park, S.-Y., Adachi, S., Tamura, K., Nakamura, H., Nakamura, K., Tsuchiya, T., Iizuka, T., Shiro, Y.
登録日2000-04-21
公開日2000-05-10
最終更新日2017-10-04
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies
J.MOL.BIOL., 301, 2000
3WFC
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REDUCED AND CARBONMONOXIDE-BOUND CYTOCHROME C-DEPENDENT NITRIC OXIDE REDUCTASE (CNOR) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH ANTIBODY FRAGMENT
分子名称:antibody fab fragment light chain, antibody fab fragment heavy chain, Nitric oxide reductase subunit B, ...
著者Sato, N., Ishii, S., Hino, T., Sugimoto, H., Fukumori, Y., Shiro, Y., Tosha, T.
登録日2013-07-18
公開日2014-05-28
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structures of reduced and ligand-bound nitric oxide reductase provide insights into functional differences in respiratory enzymes
Proteins, 2013
3WFD
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REDUCED AND ACETALDOXIME-BOUND CYTOCHROME C-DEPENDENT NITRIC OXIDE REDUCTASE (CNOR) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH ANTIBODY FRAGMENT
分子名称:antibody fab fragment light chain, antibody fab fragment heavy chain, Nitric oxide reductase subunit B, ...
著者Sato, N., Ishii, S., Hino, T., Sugimoto, H., Fukumori, Y., Shiro, Y., Tosha, T.
登録日2013-07-18
公開日2014-05-28
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of reduced and ligand-bound nitric oxide reductase provide insights into functional differences in respiratory enzymes
Proteins, 2013
3WFE
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REDUCED AND CYANIDE-BOUND CYTOCHROME C-DEPENDENT NITRIC OXIDE REDUCTASE (CNOR) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH ANTIBODY FRAGMENT
分子名称:antibody fab fragment light chain, antibody fab fragment heavy chain, Nitric oxide reductase subunit B, ...
著者Sato, N., Ishii, S., Hino, T., Sugimoto, H., Fukumori, Y., Shiro, Y., Tosha, T.
登録日2013-07-18
公開日2014-05-28
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Structures of reduced and ligand-bound nitric oxide reductase provide insights into functional differences in respiratory enzymes
Proteins, 2013
1GEI
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STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM
分子名称:CYTOCHROME P450 55A1, PROTOPORPHYRIN IX CONTAINING FE, N-BUTYL ISOCYANIDE
著者Lee, D.-S., Park, S.-Y., Yamane, K., Shiro, Y.
登録日2000-11-13
公開日2000-11-29
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural characterization of n-butyl-isocyanide complexes of cytochromes P450nor and P450cam.
Biochemistry, 40, 2001
1GEJ
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STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM
分子名称:CYTOCHROME P450 55A1, PROTOPORPHYRIN IX CONTAINING FE, N-BUTYL ISOCYANIDE
著者lee, D.-S., Park, S.-Y., Yamane, K., Shiro, Y.
登録日2000-11-13
公開日2000-12-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural characterization of n-butyl-isocyanide complexes of cytochromes P450nor and P450cam.
Biochemistry, 40, 2001
1IZO
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CYTOCHROME P450 BS BETA COMPLEXED WITH FATTY ACID
分子名称:Cytochrome P450 152A1, PROTOPORPHYRIN IX CONTAINING FE, PALMITOLEIC ACID
著者Lee, D.S., Yamada, A., Sugimoto, H., Matsunaga, I., Ogura, H., Ichihara, K., Adachi, S., Park, S.Y., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-10-10
公開日2003-03-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Substrate Recognition and Molecular Mechanism of Fatty Acid Hydroxylation by Cytochrome P450 from Bacillus subtilis. CRYSTALLOGRAPHIC, SPECTROSCOPIC, AND MUTATIONAL STUDIES.
J.Biol.Chem., 278, 2003
1V5H
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CRYSTAL STRUCTURE OF HUMAN CYTOGLOBIN (FERRIC FORM)
分子名称:Cytoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Sugimoto, H., Makino, M., Sawai, H., Kawada, N., Yoshizato, K., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-11-23
公開日2004-06-08
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis of human cytoglobin for ligand binding.
J.Mol.Biol., 339, 2004
1WVP
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STRUCTURE OF CHEMICALLY MODIFIED MYOGLOBIN WITH DISTAL N-TETRAZOLYL-HISTIDINE E7(64)
分子名称:Myoglobin, SULFATE ION, PROTOPORPHYRIN IX CONTAINING FE
著者Makino, M., Sugimoto, H., Kamiya, N., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-12-23
公開日2005-01-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Heme environmental structure of a novel artificial myoglobin with a closed heme pocket: site-specific chemical modification producing distal N-tetrazolylhistidine E7 by cyanogen bromide and azide ion
J.Am.Chem.Soc., 113, 1991
2Z3U
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CRYSTAL STRUCTURE OF CHROMOPYRROLIC ACID BOUND CYTOCHROME P450 STAP (CYP245A1)
分子名称:Cytochrome P450, PROTOPORPHYRIN IX CONTAINING FE, 3,4-DI-1H-INDOL-3-YL-1H-PYRROLE-2,5-DICARBOXYLIC ACID, ...
著者Makino, M., Sugimoto, H., Shiro, Y., Asamizu, S., Onaka, H., Nagano, S.
登録日2007-06-06
公開日2007-07-03
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures and catalytic mechanism of cytochrome P450 StaP that produces the indolocarbazole skeleton
Proc.Natl.Acad.Sci.Usa, 104, 2007
3A0R
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CRYSTAL STRUCTURE OF HISTIDINE KINASE THKA (TM1359) IN COMPLEX WITH RESPONSE REGULATOR PROTEIN TRRA (TM1360)
分子名称:Sensor protein, Response regulator, MERCURY (II) ION
著者Yamada, S., Sugimoto, H., Kobayashi, M., Ohno, A., Nakamura, H., Shiro, Y.
登録日2009-03-24
公開日2009-10-20
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3.8 Å)
主引用文献Structure of PAS-linked histidine kinase and the response regulator complex
Structure, 17, 2009
3CV8
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CRYSTAL STRUCTURE OF VITAMIN D HYDROXYLASE CYTOCHROME P450 105A1 (R84F MUTANT)
分子名称:Cytochrome P450-SU1, PROTOPORPHYRIN IX CONTAINING FE
著者Hayashi, K., Sugimoto, H., Shinkyo, R., Yamada, M., Ikeda, S., Ikushiro, S., Kamakura, M., Shiro, Y., Sakaki, T.
登録日2008-04-18
公開日2008-11-04
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure-based design of a highly active vitamin D hydroxylase from Streptomyces griseolus CYP105A1
Biochemistry, 47, 2008
3CV9
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CRYSTAL STRUCTURE OF VITAMIN D HYDROXYLASE CYTOCHROME P450 105A1 (R73A/R84A MUTANT) IN COMPLEX WITH 1ALPHA,25-DIHYDROXYVITAMIN D3
分子名称:Cytochrome P450-SU1, PROTOPORPHYRIN IX CONTAINING FE, 5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL
著者Hayashi, K., Sugimoto, H., Shinkyo, R., Yamada, M., Ikeda, S., Ikushiro, S., Kamakura, M., Shiro, Y., Sakaki, T.
登録日2008-04-18
公開日2008-11-04
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure-based design of a highly active vitamin D hydroxylase from Streptomyces griseolus CYP105A1
Biochemistry, 47, 2008
4U72
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CRYSTAL STRUCTURE OF 4-PHENYLIMIDAZOLE BOUND FORM OF HUMAN INDOLEAMINE 2,3-DIOXYGENASE (A260G MUTANT)
分子名称:Indoleamine 2,3-dioxygenase 1, PROTOPORPHYRIN IX CONTAINING FE, 4-PHENYL-1H-IMIDAZOLE, ...
著者Sugimoto, H., Horitani, M., Kometani, E., Shiro, Y.
登録日2014-07-30
公開日2015-09-02
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Conformation and Mobility of Active Site Loop is Critical for Substrate Binding and Inhibition in Human Indoleamine 2,3-Dioxygenase
to be published
4U74
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CRYSTAL STRUCTURE OF 4-PHENYLIMIDAZOLE BOUND FORM OF HUMAN INDOLEAMINE 2,3-DIOXYGENASE (G262A MUTANT)
分子名称:Indoleamine 2,3-dioxygenase 1, PROTOPORPHYRIN IX CONTAINING FE, 4-PHENYL-1H-IMIDAZOLE, ...
著者Sugimoto, H., Horitani, M., Kometani, E., Shiro, Y.
登録日2014-07-30
公開日2015-09-02
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Conformation and Mobility of Active Site Loop is Critical for Substrate Binding and Inhibition in Human Indoleamine 2,3-Dioxygenase
to be published
4YN8
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CRYSTAL STRUCTURE OF RESPONSE REGULATOR CHRA IN HEME-SENSING TWO COMPONENT SYSTEM
分子名称:Response regulator ChrA, SULFATE ION, MAGNESIUM ION
著者Doi, A., Nakamura, H., Shiro, Y., Sugimoto, H.
登録日2015-03-09
公開日2015-08-19
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of the response regulator ChrA in the haem-sensing two-component system of Corynebacterium diphtheriae.
Acta Crystallogr.,Sect.F, 71, 2015
1IWI
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PUTIDAREDOXIN-BINDING STABLILIZES AN ACTIVE CONFORMER OF CYTOCHROME P450CAM IN ITS REDUCED STATE; CRYSTAL STRUCTURE OF CYTOCHROME P450CAM
分子名称:CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE, CAMPHOR
著者Nagano, S., Shimada, H., Tarumi, A., Hishiki, T., Kimata-Ariga, Y., Egawa, T., Park, S.-Y., Adachi, S., Shiro, Y., Ishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-05-15
公開日2002-06-05
最終更新日2019-10-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam
Biochemistry, 42, 2003
1IWJ
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PUTIDAREDOXIN-BINDING STABLILIZES AN ACTIVE CONFORMER OF CYTOCHROME P450CAM IN ITS REDUCED STATE; CRYSTAL STRUCTURE OF MUTANT(109K) CYTOCHROME P450CAM
分子名称:CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE, CAMPHOR
著者Nagano, S., Shimada, H., Tarumi, A., Hishiki, T., Kimata-Ariga, Y., Egawa, T., Park, S.-Y., Adachi, S., Shiro, Y., Ishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-05-15
公開日2002-06-05
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam
Biochemistry, 42, 2003
1IWK
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PUTIDAREDOXIN-BINDING STABLILIZES AN ACTIVE CONFORMER OF CYTOCHROME P450CAM IN ITS REDUCED STATE; CRYSTAL STRUCTURE OF MUTANT(112K) CYTOCHROME P450CAM
分子名称:CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE
著者Nagano, S., Shimada, H., Tarumi, A., Hishiki, T., Kimata-Ariga, Y., Egawa, T., Park, S.-Y., Adachi, S., Shiro, Y., Ishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-05-15
公開日2002-06-05
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam
Biochemistry, 42, 2003
1X3U
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SOLUTION STRUCTURE OF THE C-TERMINAL TRANSCRIPTIONAL ACTIVATOR DOMAIN OF FIXJ FROM SINORHIZOBIUM MELILOT
分子名称:Transcriptional regulatory protein fixJ
著者Kurashima-Ito, K., Kasai, Y., Hosono, K., Tamura, K., Oue, S., Isogai, M., Ito, Y., Nakamura, H., Shiro, Y.
登録日2005-05-10
公開日2006-05-02
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Solution structure of the C-terminal transcriptional activator domain of FixJ from Sinorhizobium meliloti and its recognition of the fixK promoter
Biochemistry, 44, 2005
2CW1
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SOLUTION STRUCTURE OF THE DE NOVO-DESIGNED LAMBDA CRO FOLD PROTEIN
分子名称:SN4m
著者Isogai, Y., Ito, Y., Ikeya, T., Shiro, Y., Ota, M.
登録日2005-06-15
公開日2005-12-13
最終更新日2011-07-13
実験手法SOLUTION NMR
主引用文献Design of lambda Cro fold: solution structure of a monomeric variant of the de novo protein.
J.Mol.Biol., 354, 2005