Author results

1IG4
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SOLUTION STRUCTURE OF THE METHYL-CPG-BINDING DOMAIN OF HUMAN MBD1 IN COMPLEX WITH METHYLATED DNA
Descriptor:5'-D(*GP*TP*AP*TP*CP*(5CM)P*GP*GP*AP*TP*AP*C)-3', Methyl-CpG Binding Protein
Authors:Ohki, I., Shimotake, N., Fujita, N., Jee, J.-G., Ikegami, T., Nakao, M., Shirakawa, M.
Deposit date:2001-04-17
Release date:2001-05-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA.
Cell(Cambridge,Mass.), 105, 2001
1OCP
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SOLUTION STRUCTURE OF OCT3 POU-HOMEODOMAIN
Descriptor:OCT-3
Authors:Morita, E.H., Hayashi, F., Shirakawa, M., Kyogoku, Y.
Deposit date:1995-02-21
Release date:1995-09-15
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the Oct-3 POU-Homeodomain in Solution, as Determined by Triple Resonance Heteronuclear Multidimensional NMR Spectroscopy
Protein Sci., 4, 1995
1IRF
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INTERFERON REGULATORY FACTOR-2 DNA BINDING DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:INTERFERON REGULATORY FACTOR-2
Authors:Furui, J., Uegaki, K., Yamazaki, T., Shirakawa, M., Swindells, M.B., Harada, H., Taniguchi, T., Kyogoku, Y.
Deposit date:1997-11-24
Release date:1998-01-28
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of the IRF-2 DNA-binding domain: a novel subgroup of the winged helix-turn-helix family.
Structure, 6, 1998
1IRG
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INTERFERON REGULATORY FACTOR-2 DNA BINDING DOMAIN, NMR, 20 STRUCTURES
Descriptor:INTERFERON REGULATORY FACTOR-2
Authors:Furui, J., Uegaki, K., Yamazaki, T., Shirakawa, M., Swindells, M.B., Harada, H., Taniguchi, T., Kyogoku, Y.
Deposit date:1997-11-25
Release date:1998-03-18
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Solution structure of the IRF-2 DNA-binding domain: a novel subgroup of the winged helix-turn-helix family.
Structure, 6, 1998
2RRE
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STRUCTURE AND FUNCTION OF THE N-TERMINAL NUCLEOLIN BINDING DOMAIN OF NUCLEAR VALOCINE CONTAINING PROTEIN LIKE 2 (NVL2) HARBORING A NUCLEOLAR LOCALIZATION SIGNAL
Descriptor:Putative uncharacterized protein
Authors:Fujiwara, Y., Fujiwara, K., Goda, N., Iwaya, N., Tenno, T., Shirakawa, M., Hiroaki, H.
Deposit date:2010-08-03
Release date:2011-04-06
Last modified:2011-11-23
Method:SOLUTION NMR
Cite:Structure and function of the N-terminal nucleolin binding domain of nuclear valosin-containing protein-like 2 (NVL2) harboring a nucleolar localization signal
J.Biol.Chem., 286, 2011
1IRY
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SOLUTION STRUCTURE OF THE HMTH1, A NUCLEOTIDE POOL SANITIZATION ENZYME
Descriptor:hMTH1
Authors:Mishima, M., Itoh, N., Sakai, Y., Kamiya, H., Nakabeppu, Y., Shirakawa, M.
Deposit date:2001-10-25
Release date:2003-12-23
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of human MTH1, a Nudix family hydrolase that selectively degrades oxidized purine nucleoside triphosphates
J.Biol.Chem., 279, 2004
1K85
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SOLUTION STRUCTURE OF THE FIBRONECTIN TYPE III DOMAIN FROM BACILLUS CIRCULANS WL-12 CHITINASE A1.
Descriptor:CHITINASE A1
Authors:Jee, J.G., Ikegami, T., Hashimoto, M., Kawabata, T., Ikeguchi, M., Watanabe, T., Shirakawa, M.
Deposit date:2001-10-23
Release date:2002-12-18
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of the Fibronectin Type III Domain from Bacillus circulans WL-12 Chitinase A1
J.Biol.Chem., 277, 2002
1KLV
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SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF GABARAP, GABAA RECEPTOR ASSOCIATED PROTEIN
Descriptor:GABA(A) Receptor associated protein
Authors:Kouno, T., Miura, K., Tada, M., Kanematsu, T., Tate, S., Shirakawa, M., Hirata, M., Kawano, K.
Deposit date:2001-12-13
Release date:2003-10-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:1H, 13C and '5N resonance assignments of GABARAP, GABAA receptor associated protein.
J.Biomol.Nmr, 22, 2002
1KM7
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SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF GABARAP, GABAA RECEPTOR ASSOCIATED PROTEIN
Descriptor:GABA(A) Receptor Associated Protein
Authors:Kouno, T., Miura, K., Tada, M., Kanematsu, T., Tate, S., Shirakawa, M., Hirata, M., Kawano, K.
Deposit date:2001-12-14
Release date:2003-10-07
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:1H, 13C and '5N resonance assignments of GABARAP, GABAA receptor associated protein.
J.Biomol.Nmr, 22, 2002
2ROE
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SOLUTION STRUCTURE OF THERMUS THERMOPHILUS HB8 TTHA1718 PROTEIN IN VITRO
Descriptor:Heavy metal binding protein
Authors:Sakakibara, D., Sasaki, A., Ikeya, T., Hamatsu, J., Koyama, H., Mishima, M., Mikawa, T., Waelchli, M., Smith, B.O., Shirakawa, M., Guentert, P., Ito, Y.
Deposit date:2008-03-20
Release date:2009-03-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Protein structure determination in living cells by in-cell NMR spectroscopy
Nature, 458, 2009
2ROG
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SOLUTION STRUCTURE OF THERMUS THERMOPHILUS HB8 TTHA1718 PROTEIN IN LIVING E. COLI CELLS
Descriptor:Heavy metal binding protein
Authors:Sakakibara, D., Sasaki, A., Ikeya, T., Hamatsu, J., Koyama, H., Mishima, M., Mikawa, T., Waelchli, M., Smith, B.O., Shirakawa, M., Guentert, P., Ito, Y.
Deposit date:2008-03-21
Release date:2009-03-03
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Protein structure determination in living cells by in-cell NMR spectroscopy
Nature, 458, 2009
2RPQ
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SOLUTION STRUCTURE OF A SUMO-INTERACTING MOTIF OF MBD1-CONTAINING CHROMATIN-ASSOCIATED FACTOR 1 BOUND TO SUMO-3
Descriptor:Small ubiquitin-related modifier 2, Activating transcription factor 7-interacting protein 1
Authors:Sekiyama, N., Ikegami, T., Yamane, T., Ikeguchi, M., Uchimura, Y., Baba, D., Ariyoshi, M., Tochio, H., Saitoh, H., Shirakawa, M.
Deposit date:2008-07-07
Release date:2008-10-07
Last modified:2015-12-09
Method:SOLUTION NMR
Cite:Structure of the small ubiquitin-like modifier (SUMO)-interacting motif of MBD1-containing chromatin-associated factor 1 bound to SUMO-3
J.Biol.Chem., 283, 2008
3ASK
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STRUCTURE OF UHRF1 IN COMPLEX WITH HISTONE TAIL
Descriptor:E3 ubiquitin-protein ligase UHRF1, Histone H3.3, ZINC ION
Authors:Arita, K., Sugita, K., Unoki, M., Hamamoto, R., Sekiyama, N., Tochio, H., Ariyoshi, M., Shirakawa, M.
Deposit date:2010-12-16
Release date:2012-01-25
Last modified:2013-06-05
Method:X-RAY DIFFRACTION (2.904 Å)
Cite:Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1
Proc.Natl.Acad.Sci.USA, 109, 2012
3ASL
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STRUCTURE OF UHRF1 IN COMPLEX WITH HISTONE TAIL
Descriptor:E3 ubiquitin-protein ligase UHRF1, Histone H3.3, ZINC ION, ...
Authors:Arita, K., Sugita, K., Unoki, M., Hamamoto, R., Sekiyama, N., Tochio, H., Ariyoshi, M., Shirakawa, M.
Deposit date:2010-12-16
Release date:2012-01-25
Last modified:2013-06-05
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Recognition of modification status on a histone H3 tail by linked histone reader modules of the epigenetic regulator UHRF1
Proc.Natl.Acad.Sci.USA, 109, 2012
3VXV
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CRYSTAL STRUCTURE OF METHYL CPG BINDING DOMAIN OF MBD4 IN COMPLEX WITH THE 5MCG/TG SEQUENCE
Descriptor:Methyl-CpG-binding domain protein 4, DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*CP*TP*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3'), ...
Authors:Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
Deposit date:2012-09-21
Release date:2013-01-16
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
3VXX
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CRYSTAL STRUCTURE OF METHYL CPG BINDING DOMAIN OF MBD4 IN COMPLEX WITH THE 5MCG/5MCG SEQUENCE
Descriptor:Methyl-CpG-binding domain protein 4, DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*CP*(5CM)P*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3'), ...
Authors:Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
Deposit date:2012-09-21
Release date:2013-01-16
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2.204 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
3VYB
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CRYSTAL STRUCTURE OF METHYL CPG BINDING DOMAIN OF MBD4 IN COMPLEX WITH THE 5MCG/HMCG SEQUENCE
Descriptor:Methyl-CpG-binding domain protein 4, DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*CP*(5HC)P*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3'), ...
Authors:Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
Deposit date:2012-09-22
Release date:2013-01-16
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
3VYQ
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CRYSTAL STRUCTURE OF THE METHYL CPG BINDING DOMAIN OF MBD4 IN COMPLEX WITH THE 5MCG/TG SEQUENCE IN SPACE GROUP P1
Descriptor:Methyl-CpG-binding domain protein 4, DNA (5'-D(*AP*CP*AP*TP*CP*(5CM)P*GP*GP*TP*GP*A)-3'), DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*AP*TP*GP*T)-3'), ...
Authors:Otani, J., Arita, K., Kato, T., Kinoshita, M., Ariyoshi, M., Shirakawa, M.
Deposit date:2012-10-02
Release date:2013-01-16
Last modified:2013-08-14
Method:X-RAY DIFFRACTION (2.525 Å)
Cite:Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4
J.Biol.Chem., 288, 2013
1A2B
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HUMAN RHOA COMPLEXED WITH GTP ANALOGUE
Descriptor:TRANSFORMING PROTEIN RHOA, MAGNESIUM ION, 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
Authors:Ihara, K., Muraguchi, S., Kato, M., Shimizu, T., Shirakawa, M., Kuroda, S., Kaibuchi, K., Hakoshima, T.
Deposit date:1997-12-26
Release date:1998-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of human RhoA in a dominantly active form complexed with a GTP analogue.
J.Biol.Chem., 273, 1998
1D9N
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SOLUTION STRUCTURE OF THE METHYL-CPG-BINDING DOMAIN OF THE METHYLATION-DEPENDENT TRANSCRIPTIONAL REPRESSOR MBD1/PCM1
Descriptor:METHYL-CPG-BINDING PROTEIN MBD1
Authors:Ohki, I., Shimotake, N., Fujita, N., Nakao, M., Shirakawa, M.
Deposit date:1999-10-28
Release date:2000-10-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the methyl-CpG-binding domain of the methylation-dependent transcriptional repressor MBD1.
EMBO J., 18, 1999
1ED7
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SOLUTION STRUCTURE OF THE CHITIN-BINDING DOMAIN OF BACILLUS CIRCULANS WL-12 CHITINASE A1
Descriptor:CHITINASE A1
Authors:Ikegami, T., Okada, T., Hashimoto, M., Seino, S., Watanabe, T., Shirakawa, M.
Deposit date:2000-01-27
Release date:2000-05-24
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the chitin-binding domain of Bacillus circulans WL-12 chitinase A1.
J.Biol.Chem., 275, 2000
1GEA
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RECEPTOR-BOUND CONFORMATION OF PACAP21
Descriptor:PITUITARY ADENYLATE CYCLASE ACTIVATING POLYPEPTIDE
Authors:Inooka, H., Ohtaki, T., Kitahara, O., Ikegami, T., Endo, S., Kitada, C., Ogi, K., Onda, H., Fujino, M., Shirakawa, M.
Deposit date:2000-10-20
Release date:2001-04-20
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Conformation of a peptide ligand bound to its G-protein coupled receptor.
Nat.Struct.Biol., 8, 2001
1J0S
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SOLUTION STRUCTURE OF THE HUMAN INTERLEUKIN-18
Descriptor:Interleukin-18
Authors:Kato, Z., Jee, J., Shikano, H., Mishima, M., Ohki, I., Yoneda, T., Hara, T., Torigoe, K., Kondo, N., Shirakawa, M.
Deposit date:2002-11-21
Release date:2003-11-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The structure and binding mode of interleukin-18
Nat.Struct.Biol., 10, 2003
1UGL
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SOLUTION STRUCTURE OF S8-SP11
Descriptor:S-locus pollen protein
Authors:Mishima, M., Takayama, S., Sasaki, K., Jee, J.G., Kojima, C., Isogai, A., Shirakawa, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-06-16
Release date:2003-09-30
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the Male Determinant Factor for Brassica Self-incompatibility
J.Biol.Chem., 278, 2003
1XPA
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SOLUTION STRUCTURE OF THE DNA-AND RPA-BINDING DOMAIN OF THE HUMAN REPAIR FACTOR XPA, NMR, 1 STRUCTURE
Descriptor:XPA, ZINC ION
Authors:Ikegami, T., Kuraoka, I., Saijo, M., Kodo, N., Kyogoku, Y., Morikawa, K., Tanaka, K., Shirakawa, M.
Deposit date:1998-07-06
Release date:1999-07-22
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the DNA- and RPA-binding domain of the human repair factor XPA.
Nat.Struct.Biol., 5, 1998
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