Author results

1CH4
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MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA (F133V)
Descriptor:MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA, PROTOPORPHYRIN IX CONTAINING FE, CARBON MONOXIDE
Authors:Shirai, T., Fujikake, M., Yamane, T., Inaba, K., Ishimori, K., Morishima, I.
Deposit date:1998-06-11
Release date:1999-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of a protein with an artificial exon-shuffling, module M4-substituted chimera hemoglobin beta alpha, at 2.5 A resolution.
J.Mol.Biol., 287, 1999
2ZE0
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ALPHA-GLUCOSIDASE GSJ
Descriptor:Alpha-glucosidase, CALCIUM ION
Authors:Shirai, T., Hung, V.S., Morinaka, K., Kobayashi, T., Ito, S.
Deposit date:2007-12-04
Release date:2007-12-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of GH13 alpha-glucosidase GSJ from one of the deepest sea bacteria
Proteins, 73, 2008
1WSD
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ALKALINE M-PROTEASE FORM I CRYSTAL STRCUTURE
Descriptor:M-protease, CALCIUM ION, SULFATE ION
Authors:Shirai, T., Suzuki, A., Yamane, T., Ashida, T., Kobayashi, T., Hitomi, J., Ito, S.
Deposit date:2004-11-05
Release date:2004-11-16
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High-resolution crystal structure of M-protease: phylogeny aided analysis of the high-alkaline adaptation mechanism
Protein Eng., 10, 1997
1C1F
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LIGAND-FREE CONGERIN I
Descriptor:PROTEIN (CONGERIN I)
Authors:Shirai, T., Mitsuyama, C., Niwa, Y., Matsui, Y., Hotta, H., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
Deposit date:1999-03-03
Release date:1999-10-08
Last modified:2016-04-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution.
Structure Fold.Des., 7, 1999
1C1L
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LACTOSE-LIGANDED CONGERIN I
Descriptor:PROTEIN (CONGERIN I), BETA-D-GALACTOSE, BETA-D-GLUCOSE
Authors:Shirai, T., Mitsuyama, C., Niwa, Y., Matsui, Y., Hotta, H., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
Deposit date:1999-03-03
Release date:1999-10-08
Last modified:2016-04-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution.
Structure Fold.Des., 7, 1999
1IS3
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LACTOSE AND MES-LIGANDED CONGERIN II
Descriptor:CONGERIN II, BETA-LACTOSE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Shirai, T., Matsui, Y., Shionyu-Mitsuyama, C., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
Deposit date:2001-11-12
Release date:2002-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
1IS4
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LACTOSE-LIGANDED CONGERIN II
Descriptor:CONGERIN II, BETA-LACTOSE
Authors:Shirai, T., Matsui, Y., Shionyu-Mitsuyama, C., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
Deposit date:2001-11-12
Release date:2002-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of a Conger Eel Galectin (Congerin II) at 1.45 A Resolution: Implication for the Accelerated Evolution of a New Ligand-Binding Site Following Gene Duplication
J.Mol.Biol., 321, 2002
1IS5
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LIGAND FREE CONGERIN II
Descriptor:Congerin II
Authors:Shirai, T., Matsui, Y., Shionyu-Mitsuyama, C., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
Deposit date:2001-11-12
Release date:2002-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
1IS6
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MES-LIGANDED CONGERIN II
Descriptor:Congerin II, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Shirai, T., Matsui, Y., Shionyu-Mitsuyama, C., Yamane, T., Kamiya, H., Ishii, C., Ogawa, T., Muramoto, K.
Deposit date:2001-11-12
Release date:2002-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication
J.MOL.BIOL., 321, 2002
2DIE
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ALKALINE ALPHA-AMYLASE AMYK FROM BACILLUS SP. KSM-1378
Descriptor:amylase, CALCIUM ION, SODIUM ION
Authors:Shirai, T., Igarashi, K., Ozawa, T., Hagihara, H., Kobayashi, T., Ozaki, K., Ito, S.
Deposit date:2006-03-29
Release date:2007-02-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Ancestral sequence evolutionary trace and crystal structure analyses of alkaline alpha-amylase from Bacillus sp. KSM-1378 to clarify the alkaline adaptation process of proteins
Proteins, 66, 2007
1G01
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ALKALINE CELLULASE K CATALYTIC DOMAIN
Descriptor:ENDOGLUCANASE, CADMIUM ION, ACETIC ACID
Authors:Shirai, T., Ishida, H., Noda, J., Yamane, T., Ozaki, K., Hakamada, Y., Ito, S.
Deposit date:2000-10-05
Release date:2001-08-01
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of alkaline cellulase K: insight into the alkaline adaptation of an industrial enzyme.
J.Mol.Biol., 310, 2001
1G0C
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ALKALINE CELLULASE K CATALYTIC DOMAIN-CELLOBIOSE COMPLEX
Descriptor:ENDOGLUCANASE, CELLOBIOSE, CADMIUM ION, ...
Authors:Shirai, T., Ishida, H., Noda, J., Yamane, T., Ozaki, K., Hakamada, Y., Ito, S.
Deposit date:2000-10-05
Release date:2001-08-01
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of alkaline cellulase K: insight into the alkaline adaptation of an industrial enzyme.
J.Mol.Biol., 310, 2001
2ZX0
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RHAMNOSE-BINDING LECTIN CSL3
Descriptor:CSL3, PHOSPHATE ION, GLYCEROL
Authors:Shirai, T., Watababe, Y., Lee, M., Ogawa, T., Muramoto, K.
Deposit date:2008-12-19
Release date:2009-06-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
2ZX1
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RHAMNOSE-BINDING LECTIN CSL3
Descriptor:CSL3, PHOSPHATE ION
Authors:Shirai, T., Watababe, Y., Lee, M., Ogawa, T., Muramoto, K.
Deposit date:2008-12-19
Release date:2009-06-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
2ZX2
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RHAMNOSE-BINDING LECTIN CSL3
Descriptor:CSL3, PHOSPHATE ION, ALPHA-L-RHAMNOSE
Authors:Shirai, T., Watababe, Y., Lee, M., Ogawa, T., Muramoto, K.
Deposit date:2008-12-19
Release date:2009-06-30
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
2ZX3
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RHAMNOSE-BINDING LECTIN CSL3
Descriptor:CSL3, BETA-D-GLUCOSE, ALPHA D-GALACTOSE, ...
Authors:Shirai, T., Watababe, Y., Lee, M., Ogawa, T., Muramoto, K.
Deposit date:2008-12-19
Release date:2009-06-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
2ZX4
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RHAMNOSE-BINDING LECTIN CSL3
Descriptor:CSL3, BETA-D-GLUCOSE, BETA-D-GALACTOSE, ...
Authors:Shirai, T., Watababe, Y., Lee, M., Ogawa, T., Muramoto, K.
Deposit date:2008-12-19
Release date:2009-06-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein
J.Mol.Biol., 391, 2009
1JWQ
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STRUCTURE OF THE CATALYTIC DOMAIN OF CWLV, N-ACETYLMURAMOYL-L-ALANINE AMIDASE FROM BACILLUS(PAENIBACILLUS) POLYMYXA VAR.COLISTINUS
Descriptor:N-ACETYLMURAMOYL-L-ALANINE AMIDASE CwlV, ZINC ION
Authors:Yamane, T., Koyama, Y., Nojiri, Y., Hikage, T., Akita, M., Suzuki, A., Shirai, T., Ise, F., Shida, T., Sekiguchi, J.
Deposit date:2001-09-05
Release date:2003-11-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Structure of the catalytic domain of N-acetylmuramoyl-L-alanine amidase, a cell wall hydrolase from Bacillus polymyxa var.colistinus and its resemblance to the structure of carboxypeptidases
To be Published
5YCE
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SPERM WHALE MYOGLOBIN SWMB
Descriptor:Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Isogai, Y., Imamura, H., Nakae, S., Sumi, T., Takahashi, K., Nakagawa, T., Tsuneshige, A., Shirai, T.
Deposit date:2017-09-07
Release date:2018-09-19
Last modified:2018-12-12
Method:X-RAY DIFFRACTION (0.77 Å)
Cite:Tracing whale myoglobin evolution by resurrecting ancient proteins.
Sci Rep, 8, 2018
5YCG
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ANCESTRAL MYOGLOBIN AMBWP OF PAKICETUS RELATIVE
Descriptor:Ancestral myoglobin aMbWp of Pakicetus relative, PROTOPORPHYRIN IX CONTAINING FE
Authors:Isogai, Y., Imamura, H., Nakae, S., Sumi, T., Takahashi, K., Nakagawa, T., Tsuneshige, A., Shirai, T.
Deposit date:2017-09-07
Release date:2018-09-19
Last modified:2018-12-12
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Tracing whale myoglobin evolution by resurrecting ancient proteins.
Sci Rep, 8, 2018
5YCH
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ANCESTRAL MYOGLOBIN AMBWB OF BASILOSAURUS RELATIVE (MONOPHYLY)
Descriptor:Ancestral myoglobin aMbWb of Basilosaurus relative (monophyly), PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Isogai, Y., Imamura, H., Nakae, S., Sumi, T., Takahashi, K., Nakagawa, T., Tsuneshige, A., Shirai, T.
Deposit date:2017-09-07
Release date:2018-09-19
Last modified:2018-12-12
Method:X-RAY DIFFRACTION (1.354 Å)
Cite:Tracing whale myoglobin evolution by resurrecting ancient proteins.
Sci Rep, 8, 2018
5YCI
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ANCESTRAL MYOGLOBIN AMBWB' OF BASILOSAURUS RELATIVE (POLYPHYLY)
Descriptor:Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly), PROTOPORPHYRIN IX CONTAINING FE
Authors:Isogai, Y., Imamura, H., Nakae, S., Sumi, T., Takahashi, K., Nakagawa, T., Tsuneshige, A., Shirai, T.
Deposit date:2017-09-07
Release date:2018-09-19
Last modified:2018-12-12
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Tracing whale myoglobin evolution by resurrecting ancient proteins.
Sci Rep, 8, 2018
5YCJ
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ANCESTRAL MYOGLOBIN AMBWB' OF BASILOSAURUS RELATIVE (POLYPHYLY) IMIDAZOLE-LIGAND
Descriptor:Ancestral myoglobin aMbWb' of Basilosaurus relative (polyphyly), PROTOPORPHYRIN IX CONTAINING FE, IMIDAZOLE
Authors:Isogai, Y., Imamura, H., Nakae, S., Sumi, T., Takahashi, K., Nakagawa, T., Tsuneshige, A., Shirai, T.
Deposit date:2017-09-07
Release date:2018-09-19
Last modified:2018-12-12
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Tracing whale myoglobin evolution by resurrecting ancient proteins.
Sci Rep, 8, 2018
1WLC
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CONGERIN II Y16S/T88I DOUBLE MUTANT
Descriptor:Congerin II, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Shionyu-Mitsuyama, C., Ito, Y., Konno, A., Miwa, Y., Ogawa, T., Muramoto, K., Shirai, T.
Deposit date:2004-06-22
Release date:2005-06-07
Last modified:2015-02-11
Method:X-RAY DIFFRACTION (2 Å)
Cite:In vitro evolutionary thermostabilization of congerin II: a limited reproduction of natural protein evolution by artificial selection pressure
J.Mol.Biol., 347, 2005
1WLD
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CONGERIN II T88I SINGLE MUTANT
Descriptor:CONGERIN II, BETA-D-GALACTOSE, BETA-D-GLUCOSE, ...
Authors:Shionyu-Mitsuyama, C., Ito, Y., Konno, A., Miwa, Y., Ogawa, T., Muramoto, K., Shirai, T.
Deposit date:2004-06-22
Release date:2005-06-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:In vitro evolutionary thermostabilization of congerin II: a limited reproduction of natural protein evolution by artificial selection pressure
J.Mol.Biol., 347, 2005