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8GOK
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BU of 8gok by Molmil
Legionella OTU deubiquitinase LotA OTU1 domain
Descriptor: Legionella OTU-deubiquitinase A OTU1 domain
Authors:Shin, D, Kang, S.
Deposit date:2022-08-25
Release date:2023-04-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Legionella OTU deubiquitinase LotA OTU1 domain
To Be Published
6YVA
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BU of 6yva by Molmil
PLpro-C111S with mISG15
Descriptor: Replicase polyprotein 1a, Ubiquitin-like protein ISG15, ZINC ION
Authors:Shin, D, Dikic, I.
Deposit date:2020-04-28
Release date:2020-05-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.18 Å)
Cite:Papain-like protease regulates SARS-CoV-2 viral spread and innate immunity.
Nature, 587, 2020
6YK8
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BU of 6yk8 by Molmil
OTU-like deubiquitinase from Legionella -Lpg2529
Descriptor: PLATINUM (II) ION, Uncharacterized protein
Authors:Shin, D, Dikic, I.
Deposit date:2020-04-05
Release date:2021-02-10
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Bacterial OTU deubiquitinases regulate substrate ubiquitination upon Legionella infection.
Elife, 9, 2020
2O5K
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BU of 2o5k by Molmil
Crystal Structure of GSK3beta in complex with a benzoimidazol inhibitor
Descriptor: 2-(2,4-DICHLORO-PHENYL)-7-HYDROXY-1H-BENZOIMIDAZOLE-4-CARBOXYLIC ACID [2-(4-METHANESULFONYLAMINO-PHENYL)-ETHYL]-AMIDE, Glycogen synthase kinase-3 beta
Authors:Shin, D, Lee, S.C, Heo, Y.S, Cho, Y.S, Kim, Y.E, Hyun, Y.L, Cho, J.M, Lee, Y.S, Ro, S.
Deposit date:2006-12-06
Release date:2007-10-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Design and synthesis of 7-hydroxy-1H-benzoimidazole derivatives as novel inhibitors of glycogen synthase kinase-3beta
Bioorg.Med.Chem.Lett., 17, 2007
4ZQS
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BU of 4zqs by Molmil
New compact conformation of linear Ub2 structure
Descriptor: ubiquitin
Authors:Thach, T.T, Shin, D, Han, S, Lee, S.
Deposit date:2015-05-11
Release date:2016-04-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.804 Å)
Cite:New conformations of linear polyubiquitin chains from crystallographic and solution-scattering studies expand the conformational space of polyubiquitin.
Acta Crystallogr D Struct Biol, 72, 2016
3JRW
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BU of 3jrw by Molmil
Phosphorylated BC domain of ACC2
Descriptor: Acetyl-CoA carboxylase 2
Authors:Cho, Y.S, Lee, J.I, Shin, D, Kim, H.T, Lee, T.G, Heo, Y.S.
Deposit date:2009-09-09
Release date:2010-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular mechanism for the regulation of human ACC2 through phosphorylation by AMPK
Biochem.Biophys.Res.Commun., 391, 2010
3JRX
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BU of 3jrx by Molmil
Crystal structure of the BC domain of ACC2 in complex with soraphen A
Descriptor: Acetyl-CoA carboxylase 2, SORAPHEN A
Authors:Cho, Y.S, Lee, J.I, Shin, D, Kim, H.T, Lee, T.G, Heo, Y.S.
Deposit date:2009-09-09
Release date:2010-01-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular mechanism for the regulation of human ACC2 through phosphorylation by AMPK.
Biochem.Biophys.Res.Commun., 391, 2010
2HJW
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BU of 2hjw by Molmil
Crystal Structure of the BC domain of ACC2
Descriptor: Acetyl-CoA carboxylase 2
Authors:Cho, Y.S, Lee, J.I, Shin, D, Kim, H.T, Lee, T.G, Heo, Y.S.
Deposit date:2006-07-02
Release date:2007-07-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the biotin carboxylase domain of human acetyl-CoA carboxylase 2.
Proteins, 70, 2008
4LFU
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BU of 4lfu by Molmil
Crystal structure of Escherichia coli SdiA in the space group C2
Descriptor: CHLORIDE ION, Regulatory protein SdiA, TETRAETHYLENE GLYCOL
Authors:Kim, T, Duong, T, Wu, C.A, Choi, J, Lan, N, Kang, S.W, Lokanath, N.K, Shin, D, Hwang, H.Y, Kim, K.K.
Deposit date:2013-06-27
Release date:2014-03-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structural insights into the molecular mechanism of Escherichia coli SdiA, a quorum-sensing receptor
Acta Crystallogr.,Sect.D, 70, 2014
4LGW
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BU of 4lgw by Molmil
Crystal structure of Escherichia coli SdiA in the space group P6522
Descriptor: GLYCEROL, Regulatory protein SdiA
Authors:Kim, T, Duong, T, Wu, C.A, Choi, J, Lan, N, Kang, S.W, Lokanath, N.K, Shin, D, Hwang, H.Y, Kim, K.K.
Deposit date:2013-06-28
Release date:2014-03-19
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural insights into the molecular mechanism of Escherichia coli SdiA, a quorum-sensing receptor
Acta Crystallogr.,Sect.D, 70, 2014
6RYA
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BU of 6rya by Molmil
Structure of Dup1 mutant H67A:Ubiquitin complex
Descriptor: Polyubiquitin-C, Septation initiation protein
Authors:Donghyuk, S, Ivan, D.
Deposit date:2019-06-10
Release date:2019-11-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Regulation of Phosphoribosyl-Linked Serine Ubiquitination by Deubiquitinases DupA and DupB.
Mol.Cell, 77, 2020
6RYB
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BU of 6ryb by Molmil
Structure of deubiquitinase for PR-ubiquitination 1 -Dup1
Descriptor: Septation initiation protein
Authors:Donghyuk, S, Ivan, D.
Deposit date:2019-06-10
Release date:2019-11-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.315 Å)
Cite:Regulation of Phosphoribosyl-Linked Serine Ubiquitination by Deubiquitinases DupA and DupB.
Mol.Cell, 77, 2020
6ZQH
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BU of 6zqh by Molmil
Yeast Uba1 in complex with ubiquitin
Descriptor: BETA-MERCAPTOETHANOL, GLYCEROL, TETRAETHYLENE GLYCOL, ...
Authors:Misra, M, Schindelin, H.
Deposit date:2020-07-09
Release date:2020-11-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.032 Å)
Cite:Development of ADPribosyl Ubiquitin Analogues to Study Enzymes Involved in Legionella Infection.
Chemistry, 27, 2021
1L8O
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BU of 1l8o by Molmil
Molecular basis for the local conformational rearrangement of human phosphoserine phosphatase
Descriptor: L-3-phosphoserine phosphatase, PHOSPHATE ION, SERINE
Authors:Kim, H.Y, Heo, Y.S, Kim, J.H, Park, M.H, Moon, J, Park, S.Y, Lee, T.G, Jeon, Y.H, Ro, S, Hwang, K.Y.
Deposit date:2002-03-21
Release date:2003-04-01
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Molecular basis for the local conformational rearrangement of human phosphoserine phosphatase
J.Biol.Chem., 277, 2002
1L8L
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BU of 1l8l by Molmil
Molecular basis for the local confomational rearrangement of human phosphoserine phosphatase
Descriptor: D-2-AMINO-3-PHOSPHONO-PROPIONIC ACID, L-3-phosphoserine phosphatase
Authors:Kim, H.Y, Heo, Y.S, Kim, J.H, Park, M.H, Moon, J, Park, S.Y, Lee, T.G, Jeon, Y.H, Ro, S, Hwang, K.Y.
Deposit date:2002-03-21
Release date:2003-04-01
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Molecular basis for the local conformational rearrangement of human phosphoserine phosphatase.
J.Biol.Chem., 277, 2002
4Q9D
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BU of 4q9d by Molmil
X-ray structure of a putative thiamin diphosphate-dependent enzyme isolated from Mycobacterium smegmatis
Descriptor: Benzoylformate decarboxylase, FORMIC ACID, MAGNESIUM ION
Authors:Andrews, F.H, Horton, J.D, Yoon, H.J, Malik, A.M.K, Logsdon, M.G, Shin, D.H, Kneen, M.M, Suh, S.W, McLeish, M.J.
Deposit date:2014-04-30
Release date:2015-04-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The kinetic characterization and X-ray structure of a putative benzoylformate decarboxylase from M. smegmatis highlights the difficulties in the functional annotation of ThDP-dependent enzymes.
Biochim.Biophys.Acta, 1854, 2015
6G0C
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BU of 6g0c by Molmil
Crystal structure of SdeA catalytic core
Descriptor: 1,2-ETHANEDIOL, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, Ubiquitinating/deubiquitinating enzyme SdeA
Authors:Kalayil, S, Bhogaraju, S, Basquin, J, Dikic, I.
Deposit date:2018-03-17
Release date:2018-05-30
Last modified:2018-06-13
Method:X-RAY DIFFRACTION (2.802 Å)
Cite:Insights into catalysis and function of phosphoribosyl-linked serine ubiquitination.
Nature, 557, 2018
6ICI
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BU of 6ici by Molmil
Crystal structure of human MICAL3
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, [F-actin]-monooxygenase MICAL3
Authors:Hwang, K.Y, Kim, J.S.
Deposit date:2018-09-06
Release date:2020-03-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and kinetic insights into flavin-containing monooxygenase and calponin-homology domains in human MICAL3.
Iucrj, 7, 2020
6TU9
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BU of 6tu9 by Molmil
The ROR1 Pseudokinase Domain Bound To Ponatinib
Descriptor: 3-(imidazo[1,2-b]pyridazin-3-ylethynyl)-4-methyl-N-{4-[(4-methylpiperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzam ide, Inactive tyrosine-protein kinase transmembrane receptor ROR1
Authors:Mathea, S, Preuss, F, Chatterjee, D, Niininen, W, Ungureanu, D, Shin, D, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S.
Deposit date:2020-01-04
Release date:2020-01-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural Insights into Pseudokinase Domains of Receptor Tyrosine Kinases.
Mol.Cell, 79, 2020
6TUA
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BU of 6tua by Molmil
The RYK Pseudokinase Domain
Descriptor: SULFATE ION, Tyrosine-protein kinase RYK
Authors:Mathea, S, Chatterjee, D, Preuss, F, Shin, D, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S.
Deposit date:2020-01-04
Release date:2020-01-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Structural Insights into Pseudokinase Domains of Receptor Tyrosine Kinases.
Mol.Cell, 79, 2020
6S5T
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BU of 6s5t by Molmil
Legionella pneumophila SidJ-Human calmodulin complex
Descriptor: Calmodulin-2, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SidJ
Authors:Bhogaraju, S, Galej, W.P, Pfleiderer, M.M, Adams, M.
Deposit date:2019-07-02
Release date:2019-07-24
Last modified:2019-08-28
Method:ELECTRON MICROSCOPY (4.15 Å)
Cite:Inhibition of bacterial ubiquitin ligases by SidJ-calmodulin catalysed glutamylation.
Nature, 572, 2019
5ZU1
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BU of 5zu1 by Molmil
Crystal Structure of BZ junction in diverse sequence
Descriptor: DNA (5'-D(*AP*CP*GP*GP*TP*TP*TP*AP*AP*GP*GP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*TP*CP*GP*CP*GP*CP*GP*CP*CP*TP*TP*AP*AP*AP*CP*C)-3'), Double-stranded RNA-specific adenosine deaminase
Authors:Kim, K.K, Kim, D.
Deposit date:2018-05-05
Release date:2018-08-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.009 Å)
Cite:Sequence preference and structural heterogeneity of BZ junctions.
Nucleic Acids Res., 46, 2018
5ZUO
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BU of 5zuo by Molmil
Crystal Structure of BZ junction in diverse sequence
Descriptor: DNA (5'-D(*AP*CP*GP*GP*TP*TP*TP*AP*TP*CP*GP*CP*GP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*TP*CP*GP*CP*GP*CP*GP*CP*GP*AP*TP*AP*AP*AP*CP*C)-3'), Double-stranded RNA-specific adenosine deaminase
Authors:Kim, K.K, Kim, D.
Deposit date:2018-05-08
Release date:2018-08-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.902 Å)
Cite:Sequence preference and structural heterogeneity of BZ junctions.
Nucleic Acids Res., 46, 2018
5ZUP
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BU of 5zup by Molmil
Crystal Structure of BZ junction in diverse sequence
Descriptor: (5'-D(*AP*CP*GP*GP*TP*TP*TP*AP*TP*CP*GP*CP*GP*CP*GP*CP*G)-3'), (5'-D(*GP*TP*CP*GP*CP*GP*CP*GP*CP*AP*AP*TP*AP*AP*AP*CP*C)-3'), Double-stranded RNA-specific adenosine deaminase
Authors:Kim, K.K, Kim, D.
Deposit date:2018-05-08
Release date:2018-08-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Sequence preference and structural heterogeneity of BZ junctions.
Nucleic Acids Res., 46, 2018
1M4H
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BU of 1m4h by Molmil
Crystal Structure of Beta-secretase complexed with Inhibitor OM00-3
Descriptor: Inhibitor OM00-3, beta-Secretase
Authors:Hong, L, Turner, R.T, Koelsch, G, Ghosh, A.K, Tang, J.
Deposit date:2002-07-02
Release date:2002-08-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structure of Memapsin 2 (beta-Secretase) in Complex with Inhibitor OM00-3
Biochemistry, 41, 2002

 

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