Author results

1V54
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BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE
Descriptor:Cytochrome c oxidase polypeptide I, Cytochrome c oxidase polypeptide II, Cytochrome c oxidase polypeptide III, ...
Authors:Tsukihara, T., Shimokata, K., Katayama, Y., Shimada, H., Muramoto, K., Aoyama, H., Mochizuki, M., Shinzawa-Itoh, K., Yamashita, E., Yao, M., Ishimura, Y., Yoshikawa, S.
Deposit date:2003-11-21
Release date:2003-12-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process.
Proc.Natl.Acad.Sci.Usa, 100, 2003
1V55
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BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY REDUCED STATE
Descriptor:Cytochrome c oxidase polypeptide I, Cytochrome c oxidase polypeptide II, Cytochrome c oxidase polypeptide III, ...
Authors:Tsukihara, T., Shimokata, K., Katayama, Y., Shimada, H., Muramoto, K., Aoyama, H., Mochizuki, M., Shinzawa-Itoh, K., Yamashita, E., Yao, M., Ishimura, Y., Yoshikawa, S.
Deposit date:2003-11-21
Release date:2003-12-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process.
Proc.Natl.Acad.Sci.Usa, 100, 2003
2DCT
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CRYSTAL STRUCTURE OF THE TT1209 FROM THERMUS THERMOPHILUS HB8
Descriptor:hypothetical protein TTHA0104, SODIUM ION, CHLORIDE ION
Authors:Asada, Y., Sugahara, M., Shimizu, K., Yamamoto, H., Shimada, H., Nakamoto, T., Ono, N., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-01-12
Release date:2006-01-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of the TT1209 from Thermus thermophilus HB8
To be Published
1GEB
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X-RAY CRYSTAL STRUCTURE AND CATALYTIC PROPERTIES OF THR252ILE MUTANT OF CYTOCHROME P450CAM
Descriptor:CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE, CAMPHOR
Authors:Hishiki, T., Shimada, H., Nagano, S., Park, S.-Y., Ishimura, Y.
Deposit date:2000-11-01
Release date:2000-11-15
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:X-ray crystal structure and catalytic properties of Thr252Ile mutant of cytochrome P450cam: roles of Thr252 and water in the active center.
J.Biochem., 128, 2000
1IWI
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PUTIDAREDOXIN-BINDING STABLILIZES AN ACTIVE CONFORMER OF CYTOCHROME P450CAM IN ITS REDUCED STATE; CRYSTAL STRUCTURE OF CYTOCHROME P450CAM
Descriptor:CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE, CAMPHOR
Authors:Nagano, S., Shimada, H., Tarumi, A., Hishiki, T., Kimata-Ariga, Y., Egawa, T., Park, S.-Y., Adachi, S., Shiro, Y., Ishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-05-15
Release date:2002-06-05
Last modified:2019-10-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam
Biochemistry, 42, 2003
1IWJ
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PUTIDAREDOXIN-BINDING STABLILIZES AN ACTIVE CONFORMER OF CYTOCHROME P450CAM IN ITS REDUCED STATE; CRYSTAL STRUCTURE OF MUTANT(109K) CYTOCHROME P450CAM
Descriptor:CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE, CAMPHOR
Authors:Nagano, S., Shimada, H., Tarumi, A., Hishiki, T., Kimata-Ariga, Y., Egawa, T., Park, S.-Y., Adachi, S., Shiro, Y., Ishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-05-15
Release date:2002-06-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam
Biochemistry, 42, 2003
1IWK
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PUTIDAREDOXIN-BINDING STABLILIZES AN ACTIVE CONFORMER OF CYTOCHROME P450CAM IN ITS REDUCED STATE; CRYSTAL STRUCTURE OF MUTANT(112K) CYTOCHROME P450CAM
Descriptor:CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nagano, S., Shimada, H., Tarumi, A., Hishiki, T., Kimata-Ariga, Y., Egawa, T., Park, S.-Y., Adachi, S., Shiro, Y., Ishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-05-15
Release date:2002-06-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam
Biochemistry, 42, 2003
2E8Q
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STRUCTURAL STUDY OF PROJECT ID PH0725 FROM PYROCOCCUS HORIKOSHII OT3 (K19M)
Descriptor:Probable diphthine synthase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Asada, Y., Shimada, H., Taketa, M., Nakamoto, T., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-23
Release date:2007-07-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (K19M)
To be Published
2E8R
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STRUCTURAL STUDY OF PROJECT ID PH0725 FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:Probable diphthine synthase, SODIUM ION, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Asada, Y., Taketa, M., Shimada, H., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-23
Release date:2007-07-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3
To be Published
2E8S
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STRUCTURAL STUDY OF PROJECT ID PH0725 FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:Probable diphthine synthase, SODIUM ION, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Asada, Y., Shimada, H., Taketa, M., Nakamoto, T., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-23
Release date:2007-07-24
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3
To be Published
2EK3
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STRUCTURAL STUDY OF PROJECT ID PH0725 FROM PYROCOCCUS HORIKOSHII OT3 (L3M)
Descriptor:diphthine synthase, SODIUM ION, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Asada, Y., Shimada, H., Taketa, M., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-22
Release date:2007-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L3M)
To be Published
2EK4
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STRUCTURAL STUDY OF PROJECT ID PH0725 FROM PYROCOCCUS HORIKOSHII OT3 (L8M)
Descriptor:diphthine synthase, SODIUM ION, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Asada, Y., Shimada, H., Taketa, M., Matsuura, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-22
Release date:2007-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L8M)
To be Published
2EL0
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STRUCTURAL STUDY OF PROJECT ID PH0725 FROM PYROCOCCUS HORIKOSHII OT3 (L21M)
Descriptor:diphthine synthase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Asada, Y., Matsuura, Y., Ono, N., Shimada, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-26
Release date:2007-10-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L21M)
To be Published
2EL3
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STRUCTURAL STUDY OF PROJECT ID PH0725 FROM PYROCOCCUS HORIKOSHII OT3 (L242M)
Descriptor:diphthine synthase, SODIUM ION, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Asada, Y., Matsuura, Y., Ono, N., Shimada, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-26
Release date:2007-10-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural study of Project ID PH0725 from Pyrococcus horikoshii OT3 (L242M)
To be Published
2OWF
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CRYSTAL STRUCTURE OF PH0725 FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:diphthine synthase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Sugahara, M., Morikawa, Y., Matsuura, Y., Shimada, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-16
Release date:2007-08-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2OWV
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CRYSTAL STRUCTURE OF PH0725 FROM PYROCOCCUS HORIKOSHII OT3
Descriptor:diphthine synthase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Sugahara, M., Kageyama, Y., Matsuura, Y., Shimada, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-02-17
Release date:2007-08-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of PH0725 from Pyrococcus horikoshii OT3
To be Published
2P6M
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CRYSTAL STRUCTURE OF TTHB049 FROM THERMUS THERMOPHILUS HB8
Descriptor:Alpha-ribazole-5'-phosphate phosphatase, GLYCEROL, SODIUM ION
Authors:Sugahara, M., Matsuura, Y., Morikawa, Y., Shimada, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-19
Release date:2007-09-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of TTHB049 from Thermus thermophilus HB8
To be Published
2P9Y
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CRYSTAL STRUCTURE OF TTHB049 FROM THERMUS THERMOPHILUS HB8
Descriptor:Alpha-ribazole-5'-phosphate phosphatase, GLYCEROL, SODIUM ION
Authors:Sugahara, M., Matsuura, Y., Kageyama, Y., Shimada, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-26
Release date:2007-10-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of TTHB049 from Thermus thermophilus HB8
To be Published
2Z7C
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CRYSTAL STRUCTURE OF CHROMATIN PROTEIN ALBA FROM HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS HORIKOSHII
Descriptor:DNA/RNA-binding protein Alba, ARGININE
Authors:Hada, K., Nakashima, T., Osawa, T., Shimada, H., Kakuta, Y., Kimura, M.
Deposit date:2007-08-17
Release date:2008-08-05
Last modified:2019-05-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure and functional analysis of an archaeal chromatin protein Alba from the hyperthermophilic archaeon Pyrococcus horikoshii OT3.
Biosci.Biotechnol.Biochem., 72, 2008
2Z86
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CRYSTAL STRUCTURE OF CHONDROITIN POLYMERASE FROM ESCHERICHIA COLI STRAIN K4 (K4CP) COMPLEXED WITH UDP-GLCUA AND UDP
Descriptor:Chondroitin synthase, URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID, MANGANESE (II) ION, ...
Authors:Osawa, T., Sugiura, N., Shimada, H., Hirooka, R., Tsuji, A., Kimura, M., Kimata, K., Kakuta, Y.
Deposit date:2007-09-03
Release date:2008-09-16
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of chondroitin polymerase from Escherichia coli K4.
Biochem. Biophys. Res. Commun., 378, 2009
2Z87
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CRYSTAL STRUCTURE OF CHONDROITIN POLYMERASE FROM ESCHERICHIA COLI STRAIN K4 (K4CP) COMPLEXED WITH UDP-GALNAC AND UDP
Descriptor:Chondroitin synthase, URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE, URIDINE-5'-DIPHOSPHATE, ...
Authors:Osawa, T., Sugiura, N., Shimada, H., Hirooka, R., Tsuji, A., Kimura, M., Kimata, K., Kakuta, Y.
Deposit date:2007-09-03
Release date:2008-09-16
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of chondroitin polymerase from Escherichia coli K4.
Biochem. Biophys. Res. Commun., 378, 2009
2Z97
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CRYSTAL STRUCTURE OF FERRIC CYTOCHROME P450CAM RECONSTITUTED WITH 7-METHYL-7-DEPROPIONATED HEMIN
Descriptor:Cytochrome P450-cam, POTASSIUM ION, 7-METHYL-7-DEPROPIONATEHEMIN, ...
Authors:Hayashi, T., Harada, K., Sakurai, K., Hirota, S., Shimada, H.
Deposit date:2007-09-18
Release date:2008-09-23
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A role of the heme-7-propionate side chain in cytochrome P450cam as a gate for regulating the access of water molecules to the substrate-binding site
J.Am.Chem.Soc., 131, 2009
2ZAW
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CRYSTAL STRUCTURE OF FERRIC CYTOCHROME P450CAM RECONSTITUTED WITH 6-METHYL-6-DEPROPIONATED HEMIN
Descriptor:Cytochrome P450-cam, POTASSIUM ION, CHLORIDE ION, ...
Authors:Harada, K., Sakurai, K., Shimada, H., Tsukihara, T., Hayashi, T.
Deposit date:2007-10-11
Release date:2008-01-01
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Evaluation of the functional role of the heme-6-propionate side chain in cytochrome P450cam
J.Am.Chem.Soc., 130, 2008
2ZAX
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CRYSTAL STRUCTURE OF FERRIC CYTOCHROME P450CAM
Descriptor:Cytochrome P450-cam, POTASSIUM ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Sakurai, K., Shimada, H., Harada, K., Hayashi, T., Tsukihara, T.
Deposit date:2007-10-11
Release date:2008-01-01
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Evaluation of the functional role of the heme-6-propionate side chain in cytochrome P450cam
J.Am.Chem.Soc., 130, 2008
2ZUH
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CRYSTAL STRUCTURE OF CAMPHOR-SOAKED FERRIC CYTOCHROME P450CAM MUTANT (D297A)
Descriptor:Camphor 5-monooxygenase, PROTOPORPHYRIN IX CONTAINING FE, CAMPHOR, ...
Authors:Sakurai, K., Harada, K., Shimada, H., Shimokata, K., Hayashi, T., Tsukihara, T.
Deposit date:2008-10-18
Release date:2009-10-20
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structure of Camphor-soaked Ferric Cytochrome P450cam Mutant
to be published
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