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1EZW
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STRUCTURE OF COENZYME F420 DEPENDENT TETRAHYDROMETHANOPTERIN REDUCTASE FROM METHANOPYRUS KANDLERI
Descriptor:COENZYME F420-DEPENDENT N5,N10-METHYLENETETRAHYDROMETHANOPTERIN REDUCTASE, MAGNESIUM ION, CHLORIDE ION
Authors:Shima, S., Warkentin, E., Grabarse, W., Thauer, R.K., Ermler, U.
Deposit date:2000-05-12
Release date:2000-09-06
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure of coenzyme F(420) dependent methylenetetrahydromethanopterin reductase from two methanogenic archaea.
J.Mol.Biol., 300, 2000
1F07
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STRUCTURE OF COENZYME F420 DEPENDENT TETRAHYDROMETHANOPTERIN REDUCTASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM
Descriptor:COENZYME F420-DEPENDENT N5,N10-METHYLENETETRAHYDROMETHANOPTERIN REDUCTASE, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, (4S)-2-METHYL-2,4-PENTANEDIOL, ...
Authors:Shima, S., Warkentin, E., Grabarse, W., Thauer, R.K., Ermler, U.
Deposit date:2000-05-15
Release date:2000-09-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of coenzyme F(420) dependent methylenetetrahydromethanopterin reductase from two methanogenic archaea.
J.Mol.Biol., 300, 2000
3SQG
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CRYSTAL STRUCTURE OF A METHYL-COENZYME M REDUCTASE PURIFIED FROM BLACK SEA MATS
Descriptor:Methyl coenzyme M reductase, alpha subunit, Methyl-coenzyme M reductase, ...
Authors:Shima, S., Krueger, M., Weinert, T., Demmer, U., Thauer, R.K., Ermler, U.
Deposit date:2011-07-05
Release date:2011-11-30
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure of a methyl-coenzyme M reductase from Black Sea mats that oxidize methane anaerobically.
Nature, 481, 2011
3DAF
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THE CRYSTAL STRUCTURE OF [FE]-HYDROGENASE HOLOENZYME (HMD) FROM METHANOCALDOCOCCUS JANNASCHII COCRYSTALLIZED WITH CYANIDE
Descriptor:5,10-methenyltetrahydromethanopterin hydrogenase, PHOSPHATE ION, FE (II) ION, ...
Authors:Pilak, O., Warkentin, E., Shima, S., Thauer, R.K., Ermler, U.
Deposit date:2008-05-29
Release date:2008-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The crystal structure of [Fe]-hydrogenase reveals the geometry of the active site.
Science, 321, 2008
3DAG
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THE CRYSTAL STRUCTURE OF [FE]-HYDROGENASE HOLOENZYME (HMD) FROM METHANOCALDOCOCCUS JANNASCHII
Descriptor:5,10-methenyltetrahydromethanopterin hydrogenase, FE (II) ION, 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine, ...
Authors:Pilak, O., Warkentin, E., Shima, S., Thauer, R.K., Ermler, U.
Deposit date:2008-05-29
Release date:2008-12-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The crystal structure of [Fe]-hydrogenase reveals the geometry of the active site.
Science, 321, 2008
1U6I
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THE STRUCTURE OF NATIVE COENZYME F420-DEPENDENT METHYLENETETRAHYDROMETHANOPTERIN DEHYDROGENASE AT 2.2A RESOLUTION
Descriptor:F420-dependent methylenetetrahydromethanopterin dehydrogenase, MAGNESIUM ION
Authors:Warkentin, E., Hagemeier, C.H., Shima, S., Thauer, R.K., Ermler, U.
Deposit date:2004-07-30
Release date:2005-02-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The structure of F420-dependent methylenetetrahydromethanopterin dehydrogenase: a crystallographic 'superstructure' of the selenomethionine-labelled protein crystal structure.
Acta Crystallogr.,Sect.D, 61, 2005
1U6J
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THE STRUCTURE OF NATIVE COENZYME F420-DEPENDENT METHYLENETETRAHYDROMETHANOPTERIN DEHYDROGENASE AT 2.4A RESOLUTION
Descriptor:F420-dependent methylenetetrahydromethanopterin dehydrogenase, MAGNESIUM ION
Authors:Warkentin, E., Hagemeier, C.H., Shima, S., Thauer, R.K., Ermler, U.
Deposit date:2004-07-30
Release date:2005-02-01
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The structure of F420-dependent methylenetetrahydromethanopterin dehydrogenase: a crystallographic 'superstructure' of the selenomethionine-labelled protein crystal structure.
Acta Crystallogr.,Sect.D, 61, 2005
1U6K
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TLS REFINEMENT OF THE STRUCTURE OF SE-METHIONINE LABELLED COENZYME F420-DEPENDENT METHYLENETETRAHYDROMETHANOPTERIN DEHYDROGENASE (MTD) FROM METHANOPYRUS KANDLERI
Descriptor:F420-dependent methylenetetrahydromethanopterin dehydrogenase, MAGNESIUM ION
Authors:Warkentin, E., Hagemeier, C.H., Shima, S., Thauer, R.K., Ermler, U.
Deposit date:2004-07-30
Release date:2005-02-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The structure of F420-dependent methylenetetrahydromethanopterin dehydrogenase: a crystallographic 'superstructure' of the selenomethionine-labelled protein crystal structure.
Acta Crystallogr.,Sect.D, 61, 2005
3F47
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THE CRYSTAL STRUCTURE OF [FE]-HYDROGENASE (HMD) HOLOENZYME FROM METHANOCALDOCOCCUS JANNASCHII
Descriptor:5,10-methenyltetrahydromethanopterin hydrogenase, 5'-O-[(S)-hydroxy{[2-hydroxy-3,5-dimethyl-6-(2-oxoethyl)pyridin-4-yl]oxy}phosphoryl]guanosine, FE (II) ION, ...
Authors:Hiromoto, T., Pilak, O., Warkentin, E., Thauer, R.K., Shima, S., Ermler, U.
Deposit date:2008-10-31
Release date:2009-02-10
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The crystal structure of C176A mutated [Fe]-hydrogenase suggests an acyl-iron ligation in the active site iron complex.
Febs Lett., 583, 2009
6FRM
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CRYSTAL STRUCTURE OF COENZYME F420H2 OXIDASE (FPRA) CO-CRYSTALLIZED WITH 10 MM TB-XO4
Descriptor:Coenzyme F420H2 oxidase (FprA), FLAVIN MONONUCLEOTIDE, Tb-Xo4, ...
Authors:Engilberge, S., Riobe, F., Wagner, T., Di Pietro, S., Shima, S., Girard, E., Dumont, E., Maury, O.
Deposit date:2018-02-16
Release date:2018-10-31
Last modified:2019-05-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Unveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography.
Chemistry, 24, 2018
6FRN
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STRUCTURE OF F420H2 OXIDASE (FPRA) CO-CRYSTALLIZED WITH 10MM TB-XO4 AND CALCIUM CHLORIDE
Descriptor:F420H2 oxidase (FprA), FLAVIN MONONUCLEOTIDE, CALCIUM ION, ...
Authors:Engilberge, S., Riobe, F., Di Pietro, S., Wagner, T., Shima, S., Girard, E., Dumont, E., Maury, O.
Deposit date:2018-02-16
Release date:2018-10-03
Last modified:2019-05-29
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Unveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography.
Chemistry, 24, 2018
6FRQ
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STRUCTURE OF TETRAGONAL HEN EGG-WHITE LYSOZYME CO-CRYSTALLIZED IN PRESENCE OF 100 MM TB-XO4 AND 100 MM POTASSIUM SODIUM TARTRATE TETRAHYDRATE.
Descriptor:Lysozyme C, TERBIUM(III) ION, CHLORIDE ION
Authors:Engilberge, S., Riobe, F., Di Pietro, S., Wagner, T., Shima, S., Girard, E., Dumont, E., Maury, O.
Deposit date:2018-02-16
Release date:2018-10-03
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Unveiling the Binding Modes of the Crystallophore, a Terbium-based Nucleating and Phasing Molecular Agent for Protein Crystallography.
Chemistry, 24, 2018
1JAX
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STRUCTURE OF COENZYME F420H2:NADP+ OXIDOREDUCTASE (FNO)
Descriptor:conserved hypothetical protein, SODIUM ION, MAGNESIUM ION
Authors:Warkentin, E., Mamat, B., Thauer, R., Ermler, U., Shima, S.
Deposit date:2001-06-01
Release date:2001-12-21
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures of F420H2:NADP+ oxidoreductase with and without its substrates bound.
EMBO J., 20, 2001
1JAY
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STRUCTURE OF COENZYME F420H2:NADP+ OXIDOREDUCTASE (FNO) WITH ITS SUBSTRATES BOUND
Descriptor:Coenzyme F420H2:NADP+ Oxidoreductase (FNO), SODIUM ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Warkentin, E., Mamat, B., Thauer, R., Ermler, U., Shima, S.
Deposit date:2001-06-01
Release date:2001-12-21
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structures of F420H2:NADP+ oxidoreductase with and without its substrates bound.
EMBO J., 20, 2001
1TXG
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STRUCTURE OF GLYCEROL-3-PHOSPHATE DEHYDROGENASE FROM ARCHAEOGLOBUS FULGIDUS
Descriptor:glycerol-3-phosphate dehydrogenase [NAD(P)+], SULFATE ION, GLYCEROL, ...
Authors:Sakasegawa, S., Hagemeier, C.H., Thauer, R.K., Essen, L.O., Shima, S.
Deposit date:2004-07-05
Release date:2004-12-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and functional analysis of the gpsA gene product of Archaeoglobus fulgidus: A glycerol-3-phosphate dehydrogenase with an unusual NADP+ preference
Protein Sci., 13, 2004
2B0J
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THE CRYSTAL STRUCTURE OF THE APOENZYME OF THE IRON-SULFUR-CLUSTER-FREE HYDROGENASE (HMD)
Descriptor:5,10-methenyltetrahydromethanopterin hydrogenase
Authors:Pilak, O., Mamat, B., Vogt, S., Hagemeier, C.H., Thauer, R.K., Shima, S., Vonrhein, C., Warkentin, E., Ermler, U.
Deposit date:2005-09-14
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The Crystal Structure of the Apoenzyme of the Iron-Sulphur Cluster-free Hydrogenase
J.Mol.Biol., 358, 2006
3F46
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THE CRYSTAL STRUCTURE OF C176A MUTATED [FE]-HYDROGENASE (HMD) HOLOENZYME FROM METHANOCALDOCOCCUS JANNASCHII
Descriptor:5,10-methenyltetrahydromethanopterin hydrogenase, 5'-O-[(S)-hydroxy{[2-hydroxy-3,5-dimethyl-6-(2-oxoethyl)pyridin-4-yl]oxy}phosphoryl]guanosine, FE (II) ION, ...
Authors:Hiromoto, T., Vogt, S., Warkentin, E., Thauer, R.K., Shima, S., Ermler, U.
Deposit date:2008-10-31
Release date:2009-02-10
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The crystal structure of C176A mutated [Fe]-hydrogenase suggests an acyl-iron ligation in the active site iron complex.
Febs Lett., 583, 2009
3ZFS
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CRYO-EM STRUCTURE OF THE F420-REDUCING NIFE-HYDROGENASE FROM A METHANOGENIC ARCHAEON WITH BOUND SUBSTRATE
Descriptor:F420-REDUCING HYDROGENASE, SUBUNIT ALPHA, SUBUNIT GAMMA, ...
Authors:Mills, D.J., Vitt, S., Strauss, M., Shima, S., Vonck, J.
Deposit date:2012-12-12
Release date:2013-03-06
Last modified:2019-10-02
Method:ELECTRON MICROSCOPY (4 Å)
Cite:De Novo Modeling of the F420-Reducing [Nife]-Hydrogenase from a Methanogenic Archaeon by Cryo-Electron Microscopy
Elife, 2, 2013
4OMF
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THE F420-REDUCING [NIFE]-HYDROGENASE COMPLEX FROM METHANOTHERMOBACTER MARBURGENSIS, THE FIRST X-RAY STRUCTURE OF A GROUP 3 FAMILY MEMBER
Descriptor:F420-reducing hydrogenase, subunit gamma, subunit alpha, ...
Authors:Vitt, S., Ma, K., Warkentin, E., Moll, J., Pierik, A., Shima, S., Ermler, U.
Deposit date:2014-01-27
Release date:2014-06-11
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:The F420-Reducing [NiFe]-Hydrogenase Complex from Methanothermobacter marburgensis, the First X-ray Structure of a Group 3 Family Member.
J.Mol.Biol., 426, 2014
6EQO
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TRI-FUNCTIONAL PROPIONYL-COA SYNTHASE OF ERYTHROBACTER SP. NAP1 WITH BOUND NADP+ AND PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
Descriptor:Acetyl-coenzyme A synthetase, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Zarzycki, J., Bernhardsgruetter, I., Voegeli, B., Wagner, T., Engilberge, S., Girard, E., Shima, S., Erb, T.J.
Deposit date:2017-10-13
Release date:2018-10-24
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The multicatalytic compartment of propionyl-CoA synthase sequesters a toxic metabolite.
Nat. Chem. Biol., 14, 2018
6ESQ
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STRUCTURE OF THE ACETOACETYL-COA THIOLASE/HMG-COA SYNTHASE COMPLEX FROM METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS SOAKED WITH ACETYL-COA
Descriptor:acetoacetyl-CoA thiolase, Pfam DUF35, HydroxyMethylGlutaryl-CoA synthase, ...
Authors:Voegeli, B., Engilberge, S., Girard, E., Riobe, F., Maury, O., Erb, J.T., Shima, S., Wagner, T.
Deposit date:2017-10-24
Release date:2018-03-14
Last modified:2018-04-11
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Archaeal acetoacetyl-CoA thiolase/HMG-CoA synthase complex channels the intermediate via a fused CoA-binding site.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6ET9
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STRUCTURE OF THE ACETOACETYL-COA-THIOLASE/HMG-COA-SYNTHASE COMPLEX FROM METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS AT 2.75 A
Descriptor:Acetyl-CoA acetyltransferase thiolase, Pfam DUF35, HydroxyMethylGlutaryl-CoA synthase, ...
Authors:Engilberge, S., Voegeli, B., Girard, E., Riobe, F., Maury, O., Erb, T.J., Shima, S., Wagner, T.
Deposit date:2017-10-25
Release date:2018-03-14
Last modified:2018-04-11
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Archaeal acetoacetyl-CoA thiolase/HMG-CoA synthase complex channels the intermediate via a fused CoA-binding site.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6HF6
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CRYSTAL STRUCTURE OF THE PROTEASE 1 (E29A,E60A,E80A) FROM PYROCOCCUS HORIKOSHII CO-CRYSTALLIZED WITH TB-XO4.
Descriptor:Deglycase PH1704, Tb-Xo4, MALONATE ION, ...
Authors:Engilberge, S., Wagner, T., Santoni, G., Breyton, C., Shima, S., Franzetti, B., Riobe, F., Maury, O., Girard, E.
Deposit date:2018-08-21
Release date:2019-06-19
Last modified:2019-08-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Protein crystal structure determination with the crystallophore, a nucleating and phasing agent.
J.Appl.Crystallogr., 52, 2019
6HF7
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CRYSTAL STRUCTURE OF THE ADENYLATE KINASE FROM METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS CO-CRYSTALLIZED WITH TB-XO4
Descriptor:Adenylate kinase, Tb-Xo4, TERBIUM(III) ION, ...
Authors:Engilberge, S., Wagner, T., Santoni, G., Breyton, C., Shima, S., Franzetti, B., Riobe, F., Maury, O., Girard, E.
Deposit date:2018-08-21
Release date:2019-06-19
Last modified:2019-08-21
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Protein crystal structure determination with the crystallophore, a nucleating and phasing agent.
J.Appl.Crystallogr., 52, 2019
6HK1
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CRYSTAL STRUCTURE OF THE THIAZOLE SYNTHASE FROM METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS CO-CRYSTALLIZED WITH TB-XO4
Descriptor:Thiazole synthase, TERBIUM(III) ION, [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R)-2,3,5-tris(oxidanyl)-4-oxidanylidene-pentyl] hydrogen phosphate, ...
Authors:Engilberge, S., Wagner, T., Santoni, G., Breyton, C., Shima, S., Franzetti, B., Riobe, F., Maury, O., Girard, E.
Deposit date:2018-09-05
Release date:2019-06-19
Last modified:2019-08-21
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Protein crystal structure determination with the crystallophore, a nucleating and phasing agent.
J.Appl.Crystallogr., 52, 2019