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3VV9
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CRYSTAL STRUCTURE OF CYANIDE-INSENSITIVE ALTERNATIVE OXIDASE FROM TRYPANOSOMA BRUCEI
Descriptor:Alternative oxidase, mitochondrial, FE (III) ION, ...
Authors:Shiba, T., Kido, Y., Sakamoto, K., Inaoka, D.K., Tsuge, C., Tatsumi, R., Balogun, E.O., Nara, T., Aoki, T., Honma, T., Tanaka, A., Inoue, M., Matsuoka, S., Saimoto, H., Moore, A.L., Harada, S., Kita, K.
Deposit date:2012-07-17
Release date:2013-03-13
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structure of the trypanosome cyanide-insensitive alternative oxidase
Proc.Natl.Acad.Sci.USA, 110, 2013
3VVA
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CRYSTAL STRUCTURE OF CYANIDE-INSENSITIVE ALTERNATIVE OXIDASE FROM TRYPANOSOMA BRUCEI WITH ASCOFURANONE DERIVATIVE
Descriptor:Alternative oxidase, mitochondrial, FE (III) ION, ...
Authors:Shiba, T., Kido, Y., Sakamoto, K., Inaoka, D.K., Tsuge, C., Tatsumi, R., Balogun, E.O., Nara, T., Aoki, T., Honma, T., Tanaka, A., Inoue, M., Matsuoka, S., Saimoto, H., Moore, A.L., Harada, S., Kita, K.
Deposit date:2012-07-17
Release date:2013-03-13
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Structure of the trypanosome cyanide-insensitive alternative oxidase
Proc.Natl.Acad.Sci.USA, 110, 2013
3W54
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CRYSTAL STRUCTURE OF CYANIDE-INSENSITIVE ALTERNATIVE OXIDASE FROM TRYPANOSOMA BRUCEI WITH COLLETOCHLORIN B
Descriptor:Alternative oxidase, mitochondrial, FE (III) ION, ...
Authors:Shiba, T., Kido, Y., Sakamoto, K., Inaoka, D.K., Tsuge, C., Tatsumi, R., Takahashi, G., Balogun, E.O., Nara, T., Aoki, T., Honma, T., Tanaka, A., Inoue, M., Matsuoka, S., Saimoto, H., Moore, A.L., Harada, S., Kita, K.
Deposit date:2013-01-21
Release date:2013-03-13
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of the trypanosome cyanide-insensitive alternative oxidase
Proc.Natl.Acad.Sci.USA, 110, 2013
1JWF
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CRYSTAL STRUCTURE OF HUMAN GGA1 VHS DOMAIN.
Descriptor:ADP-ribosylation factor binding protein GGA1
Authors:Shiba, T., Takatsu, H., Nogi, T., Matsugaki, N., Kawasaki, M., Igarashi, N., Suzuki, M., Kato, R., Earnest, T., Nakayama, K., Wakatsuki, S.
Deposit date:2001-09-04
Release date:2002-03-06
Last modified:2018-06-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for recognition of acidic-cluster dileucine sequence by GGA1.
Nature, 415, 2002
1JWG
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VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH CATION-INDEPENDENT M6PR C-TERMINAL PEPTIDE
Descriptor:ADP-ribosylation factor binding protein GGA1, Cation-independent mannose-6-phosphate receptor, IODIDE ION
Authors:Shiba, T., Takatsu, H., Nogi, T., Matsugaki, N., Kawasaki, M., Igarashi, N., Suzuki, M., Kato, R., Earnest, T., Nakayama, K., Wakatsuki, S.
Deposit date:2001-09-04
Release date:2002-03-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for recognition of acidic-cluster dileucine sequence by GGA1.
Nature, 415, 2002
5ZDP
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CRYSTAL STRUCTURE OF CYANIDE-INSENSITIVE ALTERNATIVE OXIDASE FROM TRYPANOSOMA BRUCEI WITH FERULENOL
Descriptor:Alternative oxidase, mitochondrial, FE (III) ION, ...
Authors:Shiba, T., Inaoka, D.K., Takahashi, G., Tsuge, C., Kido, Y., Young, L., Ueda, S., Balogun, E.O., Nara, T., Honma, T., Tanaka, A., Inoue, M., Saimoto, H., Harada, S., Moore, A.L., Kita, K.
Deposit date:2018-02-23
Release date:2019-02-27
Last modified:2019-04-10
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Insights into the ubiquinol/dioxygen binding and proton relay pathways of the alternative oxidase.
Biochim Biophys Acta Bioenerg, 1860, 2019
5ZDQ
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CRYSTAL STRUCTURE OF CYANIDE-INSENSITIVE ALTERNATIVE OXIDASE FROM TRYPANOSOMA BRUCEI WITH COLLETOCHLORIN B
Descriptor:Alternative oxidase, mitochondrial, FE (III) ION, ...
Authors:Shiba, T., Inaoka, D.K., Takahashi, G., Tsuge, C., Kido, Y., Young, L., Ueda, S., Balogun, E.O., Nara, T., Honma, T., Tanaka, A., Inoue, M., Saimoto, H., Harada, S., Moore, A.L., Kita, K.
Deposit date:2018-02-23
Release date:2019-02-27
Last modified:2019-04-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Insights into the ubiquinol/dioxygen binding and proton relay pathways of the alternative oxidase.
Biochim Biophys Acta Bioenerg, 1860, 2019
5ZDR
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CRYSTAL STRUCTURE OF CYANIDE-INSENSITIVE ALTERNATIVE OXIDASE FROM TRYPANOSOMA BRUCEI WITH ASCOFURANONE DERIVATIVE
Descriptor:Alternative oxidase, mitochondrial, FE (III) ION, ...
Authors:Shiba, T., Inaoka, D.K., Takahashi, G., Tsuge, C., Kido, Y., Young, L., Ueda, S., Balogun, E.O., Nara, T., Honma, T., Tanaka, A., Inoue, M., Saimoto, H., Harada, S., Moore, A.L., Kita, K.
Deposit date:2018-02-23
Release date:2019-02-27
Last modified:2019-04-10
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Insights into the ubiquinol/dioxygen binding and proton relay pathways of the alternative oxidase.
Biochim Biophys Acta Bioenerg, 1860, 2019
1J2J
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CRYSTAL STRUCTURE OF GGA1 GAT N-TERMINAL REGION IN COMPLEX WITH ARF1 GTP FORM
Descriptor:ADP-ribosylation factor 1, ADP-ribosylation factor binding protein GGA1, MAGNESIUM ION, ...
Authors:Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.
Deposit date:2003-01-05
Release date:2003-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport
NAT.STRUCT.BIOL., 10, 2003
1O3X
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CRYSTAL STRUCTURE OF HUMAN GGA1 GAT DOMAIN
Descriptor:ADP-ribosylation factor binding protein GGA1
Authors:Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.
Deposit date:2003-05-08
Release date:2003-05-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular Mechanism of Membrane Recruitment of Gga by Arf in Lysosomal Protein Transport
Nat.Struct.Biol., 10, 2003
1O3Y
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CRYSTAL STRUCTURE OF MOUSE ARF1 (DELTA17-Q71L), GTP FORM
Descriptor:ADP-ribosylation factor 1, MAGNESIUM ION, GUANOSINE-5'-TRIPHOSPHATE
Authors:Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.
Deposit date:2003-05-08
Release date:2003-05-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport
Nat.Struct.Biol., 10, 2003
2D0J
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CRYSTAL STRUCTURE OF HUMAN GLCAT-S APO FORM
Descriptor:Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2
Authors:Shiba, T., Kakuda, S., Ishiguro, M., Oka, S., Kawasaki, T., Wakatsuki, S., Kato, R.
Deposit date:2005-08-03
Release date:2006-07-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of GlcAT-S, a human glucuronyltransferase, involved in the biosynthesis of the HNK-1 carbohydrate epitope
To be published
1UJJ
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VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C-TERMINAL PEPTIDE FROM BACE
Descriptor:ADP-ribosylation factor binding protein GGA1, C-terminal peptide from Beta-secretase
Authors:Shiba, T., Kametaka, S., Kawasaki, M., Shibata, M., Waguri, S., Uchiyama, Y., Wakatsuki, S.
Deposit date:2003-08-05
Release date:2004-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Insights into the Phosphoregulation of beta-Secretase Sorting Signal by the VHS Domain of GGA1
TRAFFIC, 5, 2004
1UJK
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VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C-TERMINAL PHOSPHOPEPTIDE FROM BACE
Descriptor:ADP-ribosylation factor binding protein GGA1, C-terminal peptide from Beta-secretase, IODIDE ION
Authors:Shiba, T., Kametaka, S., Kawasaki, M., Shibata, M., Waguri, S., Uchiyama, Y., Wakatsuki, S.
Deposit date:2003-08-05
Release date:2004-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Insights into the Phosphoregulation of beta-Secretase Sorting Signal by the VHS Domain of GGA1
TRAFFIC, 5, 2004
2D7C
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CRYSTAL STRUCTURE OF HUMAN RAB11 IN COMPLEX WITH FIP3 RAB-BINDING DOMAIN
Descriptor:Ras-related protein Rab-11A, Rab11 family-interacting protein 3, MAGNESIUM ION, ...
Authors:Shiba, T., Koga, H., Shin, H.W., Kawasaki, M., Kato, R., Nakayama, K., Wakatsuki, S.
Deposit date:2005-11-16
Release date:2006-09-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis for Rab11-dependent membrane recruitment of a family of Rab11-interacting protein 3 (FIP3)/Arfophilin-1.
Proc.Natl.Acad.Sci.Usa, 103, 2006
5X2V
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CRYSTAL STRUCTURE OF PSEUDOMONAS PUTIDA METHIONINE GAMMA-LYASE WILD TYPE WITHOUT SULFATE ION
Descriptor:L-methionine gamma-lyase
Authors:Shiba, T., Sato, D., Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2017-06-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
5X2W
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CRYSTAL STRUCTURE OF PSEUDOMONAS PUTIDA METHIONINE GAMMA-LYASE WILD TYPE WITH L-METHIONINE INTERMEDIATES
Descriptor:L-methionine gamma-lyase, (2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-4-(methylsulfanyl)but-2-enoic acid
Authors:Shiba, T., Sato, D., Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2017-06-07
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
5X2X
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CRYSTAL STRUCTURE OF PSEUDOMONAS PUTIDA METHIONINE GAMMA-LYASE WILD TYPE WITH L-HOMOCYSTEINE INTERMEDIATES
Descriptor:L-methionine gamma-lyase, (2E)-2-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}but-2-enoic acid, HYDROSULFURIC ACID
Authors:Shiba, T., Sato, D., Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2017-06-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
5X2Y
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CRYSTAL STRUCTURE OF PSEUDOMONAS PUTIDA METHIONINE GAMMA-LYASE C116H MUTANT WITHOUT SULFATE ION
Descriptor:L-methionine gamma-lyase
Authors:Shiba, T., Sato, D., Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2017-06-07
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
5X2Z
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CRYSTAL STRUCTURE OF PSEUDOMONAS PUTIDA METHIONINE GAMMA-LYASE C116H MUTANT WITH L-METHIONINE INTERMEDIATES
Descriptor:L-methionine gamma-lyase, (2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-4-(methylsulfanyl)but-2-enoic acid
Authors:Shiba, T., Sato, D., Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2017-06-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
5X30
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CRYSTAL STRUCTURE OF PSEUDOMONAS PUTIDA METHIONINE GAMMA-LYASE C116H MUTANT WITH L-HOMOCYSTEINE INTERMEDIATES.
Descriptor:L-methionine gamma-lyase, 2-AMINO-4-MERCAPTO-BUTYRIC ACID, (2E)-2-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}but-2-enoic acid, ...
Authors:Shiba, T., Sato, D., Harada, S.
Deposit date:2017-02-02
Release date:2017-04-12
Last modified:2017-06-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and mechanistic insights into homocysteine degradation by a mutant of methionine gamma-lyase based on substrate-assisted catalysis
Protein Sci., 26, 2017
1IU1
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CRYSTAL STRUCTURE OF HUMAN GAMMA1-ADAPTIN EAR DOMAIN
Descriptor:gamma1-adaptin
Authors:Nogi, T., Shiba, Y., Kawasaki, M., Shiba, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Takatsu, H., Nakayama, K., Wakatsuki, S.
Deposit date:2002-02-19
Release date:2002-07-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the accessory protein recruitment by the gamma-adaptin ear domain.
Nat.Struct.Biol., 9, 2002
1WR6
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CRYSTAL STRUCTURE OF GGA3 GAT DOMAIN IN COMPLEX WITH UBIQUITIN
Descriptor:ADP-ribosylation factor binding protein GGA3, ubiquitin
Authors:Kawasaki, M., Shiba, T., Shiba, Y., Yamaguchi, Y., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Kato, K., Nakayama, K., Wakatsuki, S.
Deposit date:2004-10-12
Release date:2005-06-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular mechanism of ubiquitin recognition by GGA3 GAT domain.
Genes Cells, 10, 2005
3W6Y
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STRUCTURE OF TRYPANOSOMA CRUZI DIHYDROOROTATE DEHYDROGENASE IN COMPLEX WITH TT2-2-199
Descriptor:Dihydroorotate dehydrogenase (fumarate), 5-[2-(5-carboxynaphthalen-2-yl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid, GLYCEROL, ...
Authors:Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Hashimoto, S., Matsuoka, S., Kuranaga, T., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.
Deposit date:2013-02-27
Release date:2014-03-05
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with TT2-2-199
To be Published
3W70
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STRUCTURE OF TRYPANOSOMA CRUZI DIHYDROOROTATE DEHYDROGENASE IN COMPLEX WITH MII-4-095
Descriptor:Dihydroorotate dehydrogenase (fumarate), 2,6-dioxo-5-[2-(4-phenoxyphenyl)ethyl]-1,2,3,6- tetrahydropyrimidine-4-carboxylic acid, GLYCEROL, ...
Authors:Inaoka, D.K., Iida, M., Tabuchi, T., Lee, N., Hashimoto, S., Matsuoka, S., Kuranaga, T., Shiba, T., Sakamoto, K., Suzuki, S., Balogun, E.O., Nara, T., Aoki, T., Inoue, M., Honma, T., Tanaka, A., Harada, S., Kita, K.
Deposit date:2013-02-27
Release date:2014-03-05
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-4-095
To be Published