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1ZNU
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BU of 1znu by Molmil
Structure of cyclotide Kalata B1 in DPC micelles solution
Descriptor: Kalata B1
Authors:Shenkarev, Z.O, Nadezhdin, K.D, Sobol, V.A, Sobol, A.G, Skjeldal, L, Arseniev, A.S.
Deposit date:2005-05-12
Release date:2006-04-25
Last modified:2020-02-05
Method:SOLUTION NMR
Cite:Conformation and mode of membrane interaction in cyclotides. Spatial structure of kalata B1 bound to a dodecylphosphocholine micelle.
Febs J., 273, 2006
1IH9
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BU of 1ih9 by Molmil
NMR Structure of Zervamicin IIB (peptaibol antibiotic) Bound to DPC Micelles
Descriptor: ZERVAMICIN IIB
Authors:Shenkarev, Z.O, Balasheva, T.A, Efremov, R.G, Yakimenko, Z.A, Ovchinnikova, T.V, Raap, J, Arseniev, A.S.
Deposit date:2001-04-19
Release date:2002-02-13
Last modified:2012-12-12
Method:SOLUTION NMR
Cite:Spatial Structure of Zervamicin Iib Bound to Dpc Micelles: Implications for Voltage-Gating.
Biophys.J., 82, 2002
2L8X
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BU of 2l8x by Molmil
Spatial structure of antimicrobial peptide Arenicin-2 dimer in DPC micelles
Descriptor: Arenicin-2
Authors:Shenkarev, Z.O, Trunov, K.I, Paramonov, A.S, Arseniev, A.S.
Deposit date:2011-01-27
Release date:2011-12-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Molecular mechanism of action of beta-hairpin antimicrobial peptide arenicin: oligomeric structure in dodecylphosphocholine micelles and pore formation in planar lipid bilayers
Biochemistry, 50, 2011
2M1F
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BU of 2m1f by Molmil
NMR Structure of Antiamoebin I (peptaibol antibiotic) bound to DMPC/DHPC bicelles
Descriptor: Antiamoebin I
Authors:Shenkarev, Z.O, Paramonov, A.S, Gizatullina, A.K.
Deposit date:2012-11-27
Release date:2012-12-12
Last modified:2013-10-02
Method:SOLUTION NMR
Cite:Peptaibol antiamoebin I: spatial structure, backbone dynamics, interaction with bicelles and lipid-protein nanodiscs, and pore formation in context of barrel-stave model.
Chem.Biodivers., 10, 2013
1R9U
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BU of 1r9u by Molmil
Refined structure of peptaibol zervamicin IIB in methanol solution from trans-hydrogen bond J couplings
Descriptor: ZERVAMICIN IIB
Authors:Shenkarev, Z.O, Balashova, T.A, Yakimenko, Z.A, Ovchinnikova, T.V, Arseniev, A.S.
Deposit date:2003-10-31
Release date:2004-11-09
Last modified:2018-10-10
Method:SOLUTION NMR
Cite:Biosynthetic Uniform 13C,15N-Labelling of Zervamicin Iib. Complete 13C and 15N NMR Assignment.
J.Pept.Sci., 9, 2003
5LQV
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BU of 5lqv by Molmil
Spatial structure of the lentil lipid transfer protein in complex with anionic lysolipid LPPG
Descriptor: 1-MYRISTOYL-2-HYDROXY-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)], Non-specific lipid-transfer protein 2
Authors:Mineev, K.S, Shenkarev, Z.O, Arseniev, A.S, Melnikova, D.N, Finkina, E.I, Ovchinnikova, T.V.
Deposit date:2016-08-17
Release date:2017-06-28
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Ligand Binding Properties of the Lentil Lipid Transfer Protein: Molecular Insight into the Possible Mechanism of Lipid Uptake.
Biochemistry, 56, 2017
2JWM
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BU of 2jwm by Molmil
NMR spatial srtucture of ternary complex kalata B7/Mn2+/DPC micelle
Descriptor: Kalata-B7
Authors:Nadezhdin, K.D, Shenkarev, Z.O, Skjeldal, L, Arseniev, A.S.
Deposit date:2007-10-16
Release date:2008-03-11
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Divalent cation coordination and mode of membrane interaction in cyclotides: NMR spatial structure of ternary complex Kalata B7/Mn(2+)/DPC micelle
J.Inorg.Biochem., 102, 2008
2KTO
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BU of 2kto by Molmil
Spatial structure of Lch-beta peptide from two-component lantibiotic Lichenicidin VK21
Descriptor: LCHB
Authors:Mineev, K.S, Shenkarev, Z.O, Ovchinnikova, T.V, Arseniev, A.S.
Deposit date:2010-02-05
Release date:2010-07-21
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Isolation, Structure Elucidation, and Synergistic Antibacterial Activity of a Novel Two-Component Lantibiotic Lichenicidin from Bacillus Licheniformis Vk21.
Biochemistry, 49, 2010
7ZJL
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BU of 7zjl by Molmil
Delta SARS-CoV-2 spike protein in complex with REGN10987 Fab homologue.
Descriptor: REGN10987 Fab homologue (Heavy chain), REGN10987 Fab homologue (Light chain), Spike glycoprotein
Authors:Pichkur, E.B, Lyukmanova, E.N, Shenkarev, Z.O.
Deposit date:2022-04-11
Release date:2023-04-19
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Delta SARS-CoV-2 spike protein in complex with REGN10987 Fab homologue.
To Be Published
7PVB
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BU of 7pvb by Molmil
Structure of Viscotoxin A3 from Viscum Album in the complex with DPC micelles
Descriptor: Viscotoxin-A3
Authors:Paramonov, A.S, Shenkarev, Z.O.
Deposit date:2021-10-01
Release date:2021-12-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Spatial structure and oligomerization of viscotoxin A3 in detergent micelles: Implication for mechanisms of ion channel formation and membrane lysis.
Biochem.Biophys.Res.Commun., 585, 2021
8C5J
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BU of 8c5j by Molmil
Spatial structure of Lch-alpha peptide from two-component lantibiotic system Lichenicidin VK21
Descriptor: Lantibiotic lichenicidin VK21 A1
Authors:Mineev, K.S, Paramonov, A.S, Arseniev, A.S, Ovchinnikova, T.V, Shenkarev, Z.O.
Deposit date:2023-01-09
Release date:2023-03-22
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Specific Binding of the alpha-Component of the Lantibiotic Lichenicidin to the Peptidoglycan Precursor Lipid II Predetermines Its Antimicrobial Activity.
Int J Mol Sci, 24, 2023
7OSC
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BU of 7osc by Molmil
Solution structure of antimicrobial peptide cathelicidin-1 PcDode from sperm whale Physeter catodon
Descriptor: cathelicidin-1-like
Authors:Mironov, P.A, Myshkin, M.Y, Shenkarev, Z.O.
Deposit date:2021-06-08
Release date:2021-09-15
Method:SOLUTION NMR
Cite:Dodecapeptide Cathelicidins of Cetartiodactyla: Structure, Mechanism of Antimicrobial Action, and Synergistic Interaction With Other Cathelicidins
Front Microbiol, 12, 2021
1DLZ
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BU of 1dlz by Molmil
SOLUTION STRUCTURE OF THE CHANNEL-FORMER ZERVAMICIN IIB (PEPTAIBOL ANTIBIOTIC)
Descriptor: ZERVAMICIN IIB
Authors:Balashova, T.A, Shenkarev, Z.O, Tagaev, A.A, Ovchinnikova, T.V, Raap, J, Arseniev, A.S.
Deposit date:1999-12-13
Release date:2000-02-03
Last modified:2012-12-12
Method:SOLUTION NMR
Cite:NMR Structure of the Channel-Former Zervamicin Iib in Isotropic Solvents.
FEBS Lett., 466, 2000
1IMI
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BU of 1imi by Molmil
SOLUTION STRUCTURE OF ALPHA-CONOTOXIN IM1
Descriptor: PROTEIN (ALPHA-CONOTOXIN IMI)
Authors:Maslennikov, I.V, Shenkarev, Z.O, Zhmak, M.N, Tsetlin, V.I, Ivanov, V.T, Arseniev, A.S.
Deposit date:1998-11-27
Release date:1999-04-23
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:NMR spatial structure of alpha-conotoxin ImI reveals a common scaffold in snail and snake toxins recognizing neuronal nicotinic acetylcholine receptors.
FEBS Lett., 444, 1999
6HN9
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BU of 6hn9 by Molmil
Nicomicin-1 -- Novel antimicrobial peptides from the Arctic polychaeta Nicomache minor provide new molecular insight into biological role of the BRICHOS domain
Descriptor: Nicomicin-1
Authors:Panteleev, P.V, Tsarev, A.V, Bolosov, I.A, Paramonov, A.S, Marggraf, M.B, Sychev, S.V, Shenkarev, Z.O, Ovchinnikova, T.V.
Deposit date:2018-09-14
Release date:2018-11-07
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Novel Antimicrobial Peptides from the Arctic PolychaetaNicomache minorProvide New Molecular Insight into Biological Role of the BRICHOS Domain.
Mar Drugs, 16, 2018
6IB6
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BU of 6ib6 by Molmil
Solution structure of the water-soluble LU-domain of human Lypd6 protein
Descriptor: Ly6/PLAUR domain-containing protein 6
Authors:Tsarev, A.V, Kulbatskii, D.S, Paramonov, A.S, Lyukmanova, E.N, Shenkarev, Z.O.
Deposit date:2018-11-29
Release date:2019-12-18
Last modified:2021-01-13
Method:SOLUTION NMR
Cite:Structural Diversity and Dynamics of Human Three-Finger Proteins Acting on Nicotinic Acetylcholine Receptors.
Int J Mol Sci, 21, 2020
8B4R
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BU of 8b4r by Molmil
Antimicrobial peptide capitellacin from polychaeta Capitella teleta in DPC (dodecylphosphocholine) micelles, monomeric form
Descriptor: BRICHOS domain-containing protein
Authors:Mironov, P.A, Reznikova, O.V, Paramonov, A.S, Shenkarev, Z.O.
Deposit date:2022-09-21
Release date:2023-10-04
Last modified:2024-03-20
Method:SOLUTION NMR
Cite:Dimerization of the beta-Hairpin Membrane-Active Cationic Antimicrobial Peptide Capitellacin from Marine Polychaeta: An NMR Structural and Thermodynamic Study
Biomolecules, 2024
5M9U
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BU of 5m9u by Molmil
Spatial structure of antimicrobial peptide arenicin-1 mutant V8R
Descriptor: Arenicin-1
Authors:Myshkin, M.Y, Shenkarev, Z.O, Panteleev, P.V, Ovchinnikova, T.V.
Deposit date:2016-11-02
Release date:2017-07-26
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Dimerization of the antimicrobial peptide arenicin plays a key role in the cytotoxicity but not in the antibacterial activity.
Biochem. Biophys. Res. Commun., 482, 2017
8B4S
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BU of 8b4s by Molmil
Antimicrobial peptide capitellacin from polychaeta Capitella teleta in DPC (dodecylphosphocholine) micelles, dimeric form
Descriptor: BRICHOS domain-containing protein
Authors:Mironov, P.A, Reznikova, O.V, Paramonov, A.S, Shenkarev, Z.O.
Deposit date:2022-09-21
Release date:2023-10-04
Last modified:2024-03-20
Method:SOLUTION NMR
Cite:Dimerization of the beta-Hairpin Membrane-Active Cationic Antimicrobial Peptide Capitellacin from Marine Polychaeta: An NMR Structural and Thermodynamic Study
Biomolecules, 2024
8BWB
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BU of 8bwb by Molmil
Spider toxin Pha1b (PnTx3-6) from Phoneutria nigriventer targeting CaV2.x calcium channels and TRPA1 channel
Descriptor: Omega-ctenitoxin-Pn4a
Authors:Mironov, P.A, Chernaya, E.M, Paramonov, A.S, Shenkarev, Z.O.
Deposit date:2022-12-06
Release date:2023-06-21
Last modified:2023-07-05
Method:SOLUTION NMR
Cite:Recombinant Production, NMR Solution Structure, and Membrane Interaction of the Ph alpha 1 beta Toxin, a TRPA1 Modulator from the Brazilian Armed Spider Phoneutria nigriventer .
Toxins, 15, 2023
2JNI
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BU of 2jni by Molmil
Spatial structure of antimicrobial peptide arenicin-2 in aqueous solution
Descriptor: Arenicin-2
Authors:Ovchinnikova, T.V, Shenkarev, Z.O, Nadezhdin, K.D, Balandin, S.V, Zhmak, M.N, Kudelina, I.A, Finkina, E.I, Kokryakov, V.N, Arseniev, A.S.
Deposit date:2007-01-25
Release date:2007-08-07
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:Recombinant expression, synthesis, purification, and solution structure of arenicin
Biochem.Biophys.Res.Commun., 360, 2007
2L03
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BU of 2l03 by Molmil
Spatial structure of water-soluble Lynx1
Descriptor: Ly-6/neurotoxin-like protein 1
Authors:Mineev, K.S, Shenkarev, Z.O, Arseniev, A.S.
Deposit date:2010-06-30
Release date:2011-01-19
Last modified:2014-10-01
Method:SOLUTION NMR
Cite:NMR structure and action on nicotinic acetylcholine receptors of water-soluble domain of human LYNX1
J.Biol.Chem., 286, 2011
6ZZE
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BU of 6zze by Molmil
Structure of the trans-(Tyr39-Pro40) form of the Human Secreted Ly-6/uPAR Related Protein-1 (SLURP-1)
Descriptor: Secreted Ly-6/uPAR-related protein 1
Authors:Paramonov, A.S, Lyukmanova, E.N, Shenkarev, Z.O.
Deposit date:2020-08-04
Release date:2021-01-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Diversity and Dynamics of Human Three-Finger Proteins Acting on Nicotinic Acetylcholine Receptors.
Int J Mol Sci, 21, 2020
6ZSO
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BU of 6zso by Molmil
Solution structure of the water-soluble LU-domain of human Lypd6b protein
Descriptor: Ly6/PLAUR domain-containing protein 6B
Authors:Tsarev, A.V, Kulbatskii, D.S, Paramonov, A.S, Lyukmanova, E.N, Shenkarev, Z.O.
Deposit date:2020-07-16
Release date:2021-01-13
Method:SOLUTION NMR
Cite:Structural Diversity and Dynamics of Human Three-Finger Proteins Acting on Nicotinic Acetylcholine Receptors.
Int J Mol Sci, 21, 2020
6ZZF
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BU of 6zzf by Molmil
Structure of the cis-(Tyr39-Pro40) form of the Human Secreted Ly-6/uPAR Related Protein-1 (SLURP-1)
Descriptor: Secreted Ly-6/uPAR-related protein 1
Authors:Paramonov, A.S, Lyukmanova, E.N, Shenkarev, Z.O.
Deposit date:2020-08-04
Release date:2021-01-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Diversity and Dynamics of Human Three-Finger Proteins Acting on Nicotinic Acetylcholine Receptors.
Int J Mol Sci, 21, 2020

 

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