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4V61
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BU of 4v61 by Molmil
Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
Descriptor: 16S rRNA, 23S rRNA, 4.8S rRNA, ...
Authors:Sharma, M.R, Wilson, D.N, Datta, P.P, Barat, C, Schluenzen, F, Fucini, P, Agrawal, R.K.
Deposit date:2007-11-09
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (9.4 Å)
Cite:Cryo-EM study of the spinach chloroplast ribosome reveals the structural and functional roles of plastid-specific ribosomal proteins
Proc.Natl.Acad.Sci.Usa, 104, 2007
8FN2
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BU of 8fn2 by Molmil
The structure of a 50S ribosomal subunit in the Lyme disease pathogen Borreliella burgdorferi
Descriptor: 23S ribosomal RNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ...
Authors:Sharma, M.R, Manjari, S.R, Agrawal, E.K, Keshavan, P, Koripella, R.K, Majumdar, S, Marcinkiewicz, A.L, Lin, Y.P, Agrawal, R.K, Banavali, N.K.
Deposit date:2022-12-26
Release date:2023-11-08
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:The structure of a hibernating ribosome in a Lyme disease pathogen.
Nat Commun, 14, 2023
8FMW
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BU of 8fmw by Molmil
The structure of a hibernating ribosome in the Lyme disease pathogen
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Sharma, M.R, Manjari, S.R, Agrawal, E.K, Keshavan, P, Koripella, R.K, Majumdar, S, Marcinkiewicz, A.L, Lin, Y.P, Agrawal, R.K, Banavali, N.K.
Deposit date:2022-12-25
Release date:2023-11-08
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:The structure of a hibernating ribosome in a Lyme disease pathogen.
Nat Commun, 14, 2023
3IY9
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BU of 3iy9 by Molmil
Leishmania Tarentolae Mitochondrial Large Ribosomal Subunit Model
Descriptor: 39S ribosomal protein L11, mitochondrial, 39S ribosomal protein L16, ...
Authors:Sharma, M.R, Booth, T.M, Simpson, L, Maslov, D.A, Agrawal, R.K.
Deposit date:2009-04-20
Release date:2009-07-07
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (14.1 Å)
Cite:Structure of a mitochondrial ribosome with minimal RNA
Proc.Natl.Acad.Sci.USA, 106, 2009
1X18
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BU of 1x18 by Molmil
Contact sites of ERA GTPase on the THERMUS THERMOPHILUS 30S SUBUNIT
Descriptor: 30S ribosomal protein S11, 30S ribosomal protein S18, 30S ribosomal protein S2, ...
Authors:Sharma, M.R, Barat, C, Agrawal, R.K.
Deposit date:2005-04-02
Release date:2005-05-17
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (13.5 Å)
Cite:Interaction of Era with the 30S Ribosomal Subunit Implications for 30S Subunit Assembly
Mol.Cell, 18, 2005
1X1L
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BU of 1x1l by Molmil
Interaction of ERA,a GTPase protein, with the 3'minor domain of the 16S rRNA within the THERMUS THERMOPHILUS 30S subunit.
Descriptor: GTP-binding protein era, RNA (130-MER)
Authors:Sharma, M.R, Barat, C, Agrawal, R.K.
Deposit date:2005-04-06
Release date:2005-05-17
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (13.5 Å)
Cite:Interaction of Era with the 30S Ribosomal Subunit Implications for 30S Subunit Assembly
Mol.Cell, 18, 2005
3IY8
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BU of 3iy8 by Molmil
Leishmania tarentolae Mitonchondrial Ribosome small subunit
Descriptor: 30S ribosomal protein S11, 30S ribosomal protein S12, 30S ribosomal protein S15, ...
Authors:Sharma, M.R, Booth, T.M, Simpson, L, Maslov, D.A, Agrawal, R.K.
Deposit date:2009-04-16
Release date:2009-07-07
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (14.1 Å)
Cite:Structure of a mitochondrial ribosome with minimal RNA
Proc.Natl.Acad.Sci.USA, 106, 2009
6VMI
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BU of 6vmi by Molmil
Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
Descriptor: 12s rRNA, 16s rRNA, 28S ribosomal protein S10, ...
Authors:Sharma, M.R, Koripella, R.K, Agrawal, R.K.
Deposit date:2020-01-28
Release date:2020-08-05
Last modified:2021-02-17
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:Structures of the human mitochondrial ribosome bound to EF-G1 reveal distinct features of mitochondrial translation elongation.
Nat Commun, 11, 2020
6DZP
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BU of 6dzp by Molmil
Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
Descriptor: 23S rRNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ...
Authors:Sharma, M.R, Li, Y, Korripella, R, Yang, Y, Kaushal, P.S, Lin, Q, Wade, J.T, Gray, A.G, Derbyshire, K.M, Agrawal, R.K, Ojha, A.
Deposit date:2018-07-05
Release date:2018-10-03
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Zinc depletion induces ribosome hibernation in mycobacteria.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6DZK
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BU of 6dzk by Molmil
Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Sharma, M.R, Li, Y, Korripella, R, Yang, Y, Kaushal, P.S, Lin, Q, Wade, J.T, Gray, A.G, Derbyshire, K.M, Agrawal, R.K, Ojha, A.
Deposit date:2018-07-05
Release date:2018-09-19
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Zinc depletion induces ribosome hibernation in mycobacteria.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6DZI
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BU of 6dzi by Molmil
Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
Descriptor: 16S rRNA, 23 S rRNA (3119-MER), 30S ribosomal protein S10, ...
Authors:Sharma, M.R, Li, Y, Korripella, R, Yang, Y, Kaushal, P.S, Lin, Q, Wade, J.T, Gray, A.G, Derbyshire, K.M, Agrawal, R.K, Ojha, A.
Deposit date:2018-07-05
Release date:2018-09-26
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Zinc depletion induces ribosome hibernation in mycobacteria.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6NU3
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BU of 6nu3 by Molmil
Structural insights into unique features of the human mitochondrial ribosome recycling
Descriptor: 12S rRNA, 16S rRNA, 28S ribosomal protein S10, ...
Authors:Sharma, M.R, Koripella, R.K, Agrawal, R.K.
Deposit date:2019-01-30
Release date:2019-04-17
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structural insights into unique features of the human mitochondrial ribosome recycling.
Proc.Natl.Acad.Sci.USA, 116, 2019
6NU2
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BU of 6nu2 by Molmil
Structural insights into unique features of the human mitochondrial ribosome recycling
Descriptor: 12S rRNA, 16S rRNA, 28S ribosomal protein S10, ...
Authors:Sharma, M.R, Koripella, R.K, Agrawal, R.K.
Deposit date:2019-01-30
Release date:2019-04-17
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural insights into unique features of the human mitochondrial ribosome recycling.
Proc.Natl.Acad.Sci.USA, 116, 2019
6VLZ
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BU of 6vlz by Molmil
Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)
Descriptor: 12s rRNA, 16s rRNA, 28S ribosomal protein S10, ...
Authors:Sharma, M.R, Koripella, R.K, Agrawal, R.K.
Deposit date:2020-01-27
Release date:2020-08-05
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Structures of the human mitochondrial ribosome bound to EF-G1 reveal distinct features of mitochondrial translation elongation.
Nat Commun, 11, 2020
8FR8
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BU of 8fr8 by Molmil
Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
Descriptor: 16S rRNA (1511-MER), 23S rRNA (3119-MER), 30S ribosomal protein S10, ...
Authors:Majumdar, S, Sharma, M.R, Manjari, S.R, Banavali, N.K, Agrawal, R.K.
Deposit date:2023-01-06
Release date:2023-05-17
Last modified:2023-06-28
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Starvation sensing by mycobacterial RelA/SpoT homologue through constitutive surveillance of translation.
Proc.Natl.Acad.Sci.USA, 120, 2023
1T1M
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BU of 1t1m by Molmil
Binding position of ribosome recycling factor (RRF) on the E. coli 70S ribosome
Descriptor: 42-mer fragment of double helix from 16S rRNA, dodecamer fragment of double helix from 23S rRNA, ribosome recycling factor
Authors:Agrawal, R.K, Sharma, M.R, Kiel, M.C, Hirokawa, G, Booth, T.M, Spahn, C.M, Grassucci, R.A, Kaji, A, Frank, J.
Deposit date:2004-04-16
Release date:2004-06-15
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: Functional implications
Proc.Natl.Acad.Sci.USA, 101, 2004
1T1O
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BU of 1t1o by Molmil
Components of the control 70S ribosome to provide reference for the RRF binding site
Descriptor: 19-mer fragment of the 23S rRNA, 42-mer fragment of double helix from 16S rRNA, dodecamer fragment of double helix from 23S rRNA
Authors:Agrawal, R.K, Sharma, M.R, Kiel, M.C, Hirokawa, G, Booth, T.M, Spahn, C.M, Grassucci, R.A, Kaji, A, Frank, J.
Deposit date:2004-04-16
Release date:2004-06-15
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: Functional implications
Proc.Natl.Acad.Sci.USA, 101, 2004
2FTC
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BU of 2ftc by Molmil
Structural Model for the Large Subunit of the Mammalian Mitochondrial Ribosome
Descriptor: 39S ribosomal protein L11, mitochondrial, 39S ribosomal protein L12, ...
Authors:Mears, J.A, Sharma, M.R, Gutell, R.R, Richardson, P.E, Agrawal, R.K, Harvey, S.C.
Deposit date:2006-01-24
Release date:2006-04-11
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12.1 Å)
Cite:A Structural Model for the Large Subunit of the Mammalian Mitochondrial Ribosome
J.Mol.Biol., 358, 2006
3JD5
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BU of 3jd5 by Molmil
Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
Descriptor: 28S ribosomal RNA, mitochondial, 28S ribosomal protein S10, ...
Authors:Kaushal, P.S, Sharma, M.R, Booth, T.M, Haque, E.M, Tung, C.S, Sanbonmatsu, K.Y, Spremulli, L.L, Agrawal, R.K.
Deposit date:2016-04-08
Release date:2016-07-13
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (7 Å)
Cite:Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome.
Proc.Natl.Acad.Sci.USA, 111, 2014
2R1G
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BU of 2r1g by Molmil
Coordinates of the thermus thermophilus 30S components neighboring RbfA as obtained by fitting into the CRYO-EM map of A 30S-RBFA complex
Descriptor: 16S RIBOSOMAL RNA HELIX 1, 16S RIBOSOMAL RNA HELIX 18, 16S RIBOSOMAL RNA HELIX 27, ...
Authors:Datta, P.P, Wilson, D.N, Kawazoe, M, Swami, N.K, Kaminishi, T, Sharma, M.R, Booth, T.M, Takemoto, C, Fucini, P, Yokoyama, S, Agrawal, R.K.
Deposit date:2007-08-22
Release date:2008-03-18
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (12.5 Å)
Cite:Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007
2R1C
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BU of 2r1c by Molmil
Coordinates of the thermus thermophilus ribosome binding factor A (RbfA) homology model as fitted into the CRYO-EM map of a 30S-RBFA complex
Descriptor: Ribosome-binding factor A
Authors:Datta, P.P, Wilson, D.N, Kawazoe, M, Swami, N.K, Kaminishi, T, Sharma, M.R, Booth, T.M, Takemoto, C, Fucini, P, Yokoyama, S, Agrawal, R.K.
Deposit date:2007-08-22
Release date:2008-03-18
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (12.5 Å)
Cite:Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007
2BCW
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BU of 2bcw by Molmil
Coordinates of the N-terminal domain of ribosomal protein L11,C-terminal domain of ribosomal protein L7/L12 and a portion of the G' domain of elongation factor G, as fitted into cryo-em map of an Escherichia coli 70S*EF-G*GDP*fusidic acid complex
Descriptor: 50S ribosomal protein L11, 50S ribosomal protein L7/L12, Elongation factor G
Authors:Datta, P.P, Sharma, M.R, Qi, L, Frank, J, Agrawal, R.K.
Deposit date:2005-10-19
Release date:2005-12-20
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (11.2 Å)
Cite:Interaction of the G' Domain of Elongation Factor G and the C-Terminal Domain of Ribosomal Protein L7/L12 during Translocation as Revealed by Cryo-EM.
Mol.Cell, 20, 2005
6NF8
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BU of 6nf8 by Molmil
Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit -Class I
Descriptor: 28S ribosomal RNA, mitochondria, 28S ribosomal protein S10, ...
Authors:Sharma, M, Koripella, R, Agrawal, R.
Deposit date:2018-12-19
Release date:2019-02-27
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.48 Å)
Cite:Structure of Human Mitochondrial Translation Initiation Factor 3 Bound to the Small Ribosomal Subunit.
iScience, 12, 2019
6NEQ
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BU of 6neq by Molmil
Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit-Class-II
Descriptor: 28S ribosomal RNA, mitochondrial, 28S ribosomal protein S10, ...
Authors:Sharma, M, Koripella, R, Agrawal, R.
Deposit date:2018-12-18
Release date:2019-02-27
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Structure of Human Mitochondrial Translation Initiation Factor 3 Bound to the Small Ribosomal Subunit.
iScience, 12, 2019
2DYJ
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BU of 2dyj by Molmil
Crystal structure of ribosome-binding factor A from Thermus thermophilus HB8
Descriptor: Ribosome-binding factor A
Authors:Kawazoe, M, Takemoto, C, Nakayama-Ushikoshi, R, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-14
Release date:2007-03-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural aspects of RbfA action during small ribosomal subunit assembly.
Mol.Cell, 28, 2007

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