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2KDI
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BU of 2kdi by Molmil
Solution structure of a Ubiquitin/UIM fusion protein
Descriptor: Ubiquitin, Vacuolar protein sorting-associated protein 27 fusion protein
Authors:Sgourakis, N.G, Patel, M.M, Garcia, A.E, Makhatadze, G.I, McCallum, S.A.
Deposit date:2009-01-09
Release date:2010-02-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Conformational Dynamics and Structural Plasticity Play Critical Roles in the Ubiquitin Recognition of a UIM Domain.
J.Mol.Biol., 396, 2010
2MPZ
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BU of 2mpz by Molmil
Atomic model of the Abeta D23N "Iowa" mutant using solid-state NMR, EM and Rosetta modeling
Descriptor: Amyloid beta A4 protein
Authors:Sgourakis, N.G, Qiang, W.
Deposit date:2014-06-10
Release date:2015-04-22
Method:SOLID-STATE NMR
Cite:Modeling an in-register, parallel "iowa" a beta fibril structure using solid-state NMR data from labeled samples with rosetta.
Structure, 23, 2015
2MIZ
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BU of 2miz by Molmil
Structure of the m04/gp34 mouse Cytomegalovirus Immunoevasin core domain
Descriptor: m04 immunoevasin
Authors:Sgourakis, N.G, Natarajan, K, Margulies, D.H, Bax, A.
Deposit date:2013-12-21
Release date:2014-07-16
Last modified:2014-10-22
Method:SOLUTION NMR
Cite:The Structure of Mouse Cytomegalovirus m04 Protein Obtained from Sparse NMR Data Reveals a Conserved Fold of the m02-m06 Viral Immune Modulator Family.
Structure, 22, 2014
3J1X
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BU of 3j1x by Molmil
A refined model of the prototypical Salmonella typhimurium T3SS basal body reveals the molecular basis for its assembly
Descriptor: Protein PrgH
Authors:Sgourakis, N.G, Bergeron, J.R.C, Worrall, L.J, Strynadka, N.C.J, Baker, D.
Deposit date:2012-07-10
Release date:2013-05-22
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly.
Plos Pathog., 9, 2013
3J1V
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BU of 3j1v by Molmil
A refined model of the prototypical Salmonella typhimurium T3SS basal body reveals the molecular basis for its assembly
Descriptor: Protein InvG
Authors:Sgourakis, N.G, Bergeron, J.R.C, Strynadka, N.J.C, Baker, D.
Deposit date:2012-07-08
Release date:2013-05-22
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly.
Plos Pathog., 9, 2013
3J1W
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BU of 3j1w by Molmil
A refined model of the prototypical Salmonella typhimurium T3SS basal body reveals the molecular basis for its assembly
Descriptor: Protein PrgH
Authors:Sgourakis, N.G, Worrall, L.J, Strynadka, N.C.J, Baker, D.
Deposit date:2012-07-10
Release date:2013-05-22
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:A Refined Model of the Prototypical Salmonella SPI-1 T3SS Basal Body Reveals the Molecular Basis for Its Assembly.
Plos Pathog., 9, 2013
6OSW
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BU of 6osw by Molmil
An order-to-disorder structural switch activates the FoxM1 transcription factor
Descriptor: Forkhead box M1
Authors:Marceau, A.H, Rubin, S.M, Nerli, S, McShane, A.C, Sgourakis, N.G.
Deposit date:2019-05-02
Release date:2019-05-29
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:An order-to-disorder structural switch activates the FoxM1 transcription factor.
Elife, 8, 2019
8SBL
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BU of 8sbl by Molmil
Structure of HLA-A*24:02 in complex with peptide, LYLPVRVLI
Descriptor: Beta-2-microglobulin, LEU-TYR-LEU-PRO-VAL-ARG-VAL-LEU-ILE, MHC class I antigen
Authors:Mallik, L, Young, M.C, Sgourakis, N.G.
Deposit date:2023-04-03
Release date:2023-12-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural principles of peptide-centric chimeric antigen receptor recognition guide therapeutic expansion.
Sci Immunol, 8, 2023
8SBK
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BU of 8sbk by Molmil
Structure of HLA-A*24:02 in complex with peptide, LYLPVRVLI (ATG2A).
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, LEU-TYR-LEU-PRO-VAL-ARG-VAL-LEU-ILE, ...
Authors:Mallik, L, Young, M.C, Sgourakis, N.G.
Deposit date:2023-04-03
Release date:2023-12-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural principles of peptide-centric chimeric antigen receptor recognition guide therapeutic expansion.
Sci Immunol, 8, 2023
5WOT
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BU of 5wot by Molmil
NMR solution structure of a-lytic protease using two 4D-spectra
Descriptor: Alpha-lytic protease
Authors:Evangelidis, T, Nerli, S, Sgourakis, N.G, Tripsianes, K.
Deposit date:2017-08-03
Release date:2018-02-07
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra.
Nat Commun, 9, 2018
5WOY
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BU of 5woy by Molmil
NMR solution structure of Enzyme I (nEIt) protein using two 4D-spectra
Descriptor: Phosphoenolpyruvate-protein phosphotransferase
Authors:Evangelidis, T, Nerli, S, Sgourakis, N.G, Tripsianes, K.
Deposit date:2017-08-03
Release date:2018-02-07
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra.
Nat Commun, 9, 2018
6AT9
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BU of 6at9 by Molmil
Crystal structure of an anaplastic lymphoma kinase-derived neuroblastoma tumor antigen bound to the Human Major Histocompatibility Complex Class I molecule HLA-A*0101
Descriptor: ALK, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
Authors:Toor, J, Rao, A.A, Salama, S, Tripathi, S, Haussler, D, Sgourakis, N.G.
Deposit date:2017-08-28
Release date:2018-03-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.9503 Å)
Cite:A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations.
Front Immunol, 9, 2018
8EK5
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BU of 8ek5 by Molmil
Engineered scFv 10LH bound to PHOX2B/HLA-A24:02
Descriptor: 10LH single chain fragment variable (scFv), Beta-2-microglobulin, GLYCEROL, ...
Authors:Garfinkle, S.E, Florio, T.J, Sgourakis, N.G.
Deposit date:2022-09-20
Release date:2023-12-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structural principles of peptide-centric chimeric antigen receptor recognition guide therapeutic expansion.
Sci Immunol, 8, 2023
5TXS
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BU of 5txs by Molmil
Crystal structure of an anaplastic lymphoma kinase-derived neuroblastoma tumor antigen bound to the Human Major Histocompatibility Complex Class I molecule HLA-B*1501
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, B-15 alpha chain, ...
Authors:Toor, J, Rao, A.A, Salama, S, Tripathi, S, Haussler, D, Sgourakis, N.G.
Deposit date:2016-11-17
Release date:2017-11-29
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.697 Å)
Cite:A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations.
Front Immunol, 9, 2018
5VZ5
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BU of 5vz5 by Molmil
Crystal structure of an anaplastic lymphoma kinase-derived neuroblastoma tumor antigen bound to the Human Major Histocompatibility Complex Class I molecule HLA-B*1501
Descriptor: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
Authors:Toor, J, Rao, A.A, Salama, S, Tripathi, S, Haussler, D, Sgourakis, N.G.
Deposit date:2017-05-26
Release date:2018-03-21
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.5901 Å)
Cite:A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations.
Front Immunol, 9, 2018
5WOX
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BU of 5wox by Molmil
NMR solution structure of KanY protein (ms6282) using two 4D-spectra
Descriptor: Uncharacterized protein
Authors:Evangelidis, T, Nerli, S, Sgourakis, N.G, Tripsianes, K.
Deposit date:2017-08-03
Release date:2018-02-07
Method:SOLUTION NMR
Cite:Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra.
Nat Commun, 9, 2018
5WOZ
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BU of 5woz by Molmil
NMR solution structure of Rtt103 (RTT) protein using two 4D-spectra
Descriptor: Regulator of Ty1 transposition protein 103
Authors:Evangelidis, T, Nerli, S, Sgourakis, N.G, Tripsianes, K.
Deposit date:2017-08-03
Release date:2018-02-07
Method:SOLUTION NMR
Cite:Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra.
Nat Commun, 9, 2018
8ERX
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BU of 8erx by Molmil
Structure of chimeric HLA-A*11:01-A*02:01 bound to HIV-1 RT peptide
Descriptor: Beta-2-microglobulin, HIV-1 RT, HLA-A*02:01
Authors:Florio, T.J, Ani, O, Young, M.C, Mallik, L, Sgourakis, N.G.
Deposit date:2022-10-13
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:Decoupling peptide binding from T cell receptor recognition with engineered chimeric MHC-I molecules.
Front Immunol, 14, 2023
8ESH
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BU of 8esh by Molmil
Structure of chimeric HLA-A*02:01 bound to CMV peptide
Descriptor: Beta-2-microglobulin, CMV peptide, HLA-A*02:01
Authors:Florio, T.J, Ani, O, Young, M.C, Mallik, L, Sgourakis, N.G.
Deposit date:2022-10-14
Release date:2023-01-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Decoupling peptide binding from T cell receptor recognition with engineered chimeric MHC-I molecules.
Front Immunol, 14, 2023
6DMP
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BU of 6dmp by Molmil
De Novo Design of a Protein Heterodimer with Specificity Mediated by Hydrogen Bond Networks
Descriptor: Designed orthogonal protein DHD13_XAAA_A, Designed orthogonal protein DHD13_XAAA_B
Authors:Chen, Z, Flores-Solis, D, Sgourakis, N.G, Baker, D.
Deposit date:2018-06-05
Release date:2018-12-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Programmable design of orthogonal protein heterodimers.
Nature, 565, 2019
7RNO
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BU of 7rno by Molmil
Model of the Ac-6-FP/hpMR1/bB2m/TAPBPR complex from integrated docking, NMR and restrained MD
Descriptor: Beta-2-microglobulin, Major histocompatibility complex class I-related gene protein, N-(6-formyl-4-oxo-3,4-dihydropteridin-2-yl)acetamide, ...
Authors:McShan, A.C, Sgourakis, N.G.
Deposit date:2021-07-29
Release date:2022-05-11
Last modified:2022-08-10
Method:SOLUTION NMR
Cite:TAPBPR employs a ligand-independent docking mechanism to chaperone MR1 molecules.
Nat.Chem.Biol., 18, 2022
7MJ9
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BU of 7mj9 by Molmil
HLA-A*02:01 bound to Neuroblastoma Derived mutant IGFBPL1 peptide
Descriptor: Beta-2-microglobulin, Insulin-like growth factor-binding protein-like 1 altered peptide, MHC class I antigen
Authors:Toor, J.S, Tripathi, S.M, Truong, H.V, Yarmarkovich, M, Maris, J.M, Sgourakis, N.G.
Deposit date:2021-04-19
Release date:2021-08-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Cross-HLA targeting of intracellular oncoproteins with peptide-centric CARs.
Nature, 599, 2021
7MJ6
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BU of 7mj6 by Molmil
HLA-A*02:01 bound to Neuroblastoma Derived IGFBPL1 peptide
Descriptor: Beta-2-microglobulin, GLYCEROL, Insulin-like growth factor-binding protein-like 1 peptide, ...
Authors:Toor, J.S, Tripathi, S.M, Truong, H.V, Yarmarkovich, M, Maris, J.M, Sgourakis, N.G.
Deposit date:2021-04-19
Release date:2021-08-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Cross-HLA targeting of intracellular oncoproteins with peptide-centric CARs.
Nature, 599, 2021
7MJ8
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BU of 7mj8 by Molmil
HLA-A*02:01 bound to Neuroblastoma Derived IGFBPL1 peptide
Descriptor: Beta-2-microglobulin, GLYCEROL, Insulin-like growth factor-binding protein-like 1 peptide, ...
Authors:Toor, J.S, Tripathi, S.M, Truong, H.V, Yarmarkovich, M, Maris, J.M, Sgourakis, N.G.
Deposit date:2021-04-19
Release date:2021-08-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Cross-HLA targeting of intracellular oncoproteins with peptide-centric CARs.
Nature, 599, 2021
7MJ7
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BU of 7mj7 by Molmil
HLA-A*02:01 bound to Neuroblastoma Derived IGFBPL1 peptide
Descriptor: Beta-2-microglobulin, GLYCEROL, Insulin-like growth factor-binding protein-like 1 peptide, ...
Authors:Toor, J.S, Tripathi, S.M, Truong, H.V, Yarmarkovich, M, Maris, J.M, Sgourakis, N.G.
Deposit date:2021-04-19
Release date:2021-08-18
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Cross-HLA targeting of intracellular oncoproteins with peptide-centric CARs.
Nature, 599, 2021

 

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