Author results

2E4P
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CRYSTAL STRUCTURE OF BPHA3 (OXIDIZED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin subunit, SULFATE ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Senda, M., Kishigami, S., Kimura, S., Ishida, T., Fukuda, M., Senda, T.
Deposit date:2006-12-15
Release date:2007-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2E4Q
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CRYSTAL STRUCTURE OF BPHA3 (REDUCED FORM)
Descriptor:Biphenyl dioxygenase ferredoxin subunit, FE2/S2 (INORGANIC) CLUSTER
Authors:Senda, M., Kishigami, S., Kimura, S., Ishida, T., Fukuda, M., Senda, T.
Deposit date:2006-12-15
Release date:2007-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
1KEI
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THERMOLYSIN (SUBSTRATE-FREE)
Descriptor:Thermolysin, CALCIUM ION, ZINC ION, ...
Authors:Senda, M., Senda, T., Kidokoro, S.
Deposit date:2001-11-16
Release date:2002-11-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure analyses of thermolysin in complex with its inhibitors
To be Published
1KJO
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THERMOLYSIN COMPLEXED WITH Z-L-THREONINE (BENZYLOXYCARBONYL-L-THREONINE)
Descriptor:Thermolysin, CALCIUM ION, ZINC ION, ...
Authors:Senda, M., Senda, T., Kidokoro, S.
Deposit date:2001-12-05
Release date:2002-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of Thermolysin in complex with its inhibitors
To be Published
1KJP
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THERMOLYSIN COMPLEXED WITH Z-L-GLUTAMIC ACID (BENZYLOXYCARBONYL-L-GLUTAMIC ACID)
Descriptor:Thermolysin, CALCIUM ION, ZINC ION, ...
Authors:Senda, M., Senda, T., Kidokoro, S.
Deposit date:2001-12-05
Release date:2002-12-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure analyses of thermolysin in complex with its inhibitors
To be Published
1KKK
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THERMOLYSIN COMPLEXED WITH Z-L-ASPARTIC ACID (BENZYLOXYCARBONYL-L-ASPARTIC ACID)
Descriptor:Thermolysin, CALCIUM ION, ZINC ION, ...
Authors:Senda, M., Senda, T., Kidokoro, S.
Deposit date:2001-12-10
Release date:2002-12-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure analyses of thermolysin in complex with its inhibitors.
To be Published
1KL6
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THERMOLYSIN COMPLEXED WITH Z-L-ALANINE (BENZYLOXYCARBONYL-L-ALANINE)
Descriptor:Thermolysin, CALCIUM ION, ZINC ION, ...
Authors:Senda, M., Senda, T., Kidokoro, S.
Deposit date:2001-12-11
Release date:2002-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure analyses of Thermolysin in complex with its inhibitors.
To be Published
1KR6
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THERMOLYSIN COMPLEXED WITH Z-D-GLUTAMIC ACID (BENZYLOXYCARBONYL-D-GLUTAMIC ACID)
Descriptor:Thermolysin, CALCIUM ION, ZINC ION, ...
Authors:Senda, M., Senda, T., Kidokoro, S.
Deposit date:2002-01-09
Release date:2003-01-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure analyses of thermolysin in complex with its inhibitors.
To be Published
1KRO
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THERMOLYSIN COMPLEXED WITH Z-D-THREONINE (BENZYLOXYCARBONYL-D-THREONINE)
Descriptor:Thermolysin, CALCIUM ION, ZINC ION, ...
Authors:Senda, M., Senda, T., Kidokoro, S.
Deposit date:2002-01-10
Release date:2003-01-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure analyses of thermolysin in complex with its inhibitors.
To be Published
1KS7
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THERMOLYSIN COMPLEXED WITH Z-D-ASPARTIC ACID (BENZYLOXYCARBONYL-D-ASPARTIC ACID)
Descriptor:Thermolysin, CALCIUM ION, ZINC ION, ...
Authors:Senda, M., Senda, T., Kidokoro, S.
Deposit date:2002-01-11
Release date:2003-01-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure analyses of thermolysin in complex with its inhibitors.
To be Published
1KTO
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THERMOLYSIN COMPLEXED WITH Z-D-ALANINE (BENZYLOXYCARBONYL-D-ALANINE)
Descriptor:Thermolysin, CALCIUM ION, ZINC ION, ...
Authors:Senda, M., Senda, T., Kidokoro, S.
Deposit date:2002-01-17
Release date:2003-01-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure analyses of thermolysin in complex with its inhibitors.
To be Published
2GQW
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 (OXIDIZED FORM)
Descriptor:ferredoxin reductase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Senda, T., Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2GR0
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 (OXIDIZED FORM, NAD+ COMPLEX)
Descriptor:ferredoxin reductase, FLAVIN-ADENINE DINUCLEOTIDE, ADENOSINE-5'-DIPHOSPHATE
Authors:Senda, T., Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2GR1
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 (HYDROQUINONE)
Descriptor:ferredoxin reductase, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Senda, T., Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2GR2
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 (OXIDIZED FORM)
Descriptor:ferredoxin reductase, FLAVIN-ADENINE DINUCLEOTIDE, ADENOSINE-5-DIPHOSPHORIBOSE
Authors:Senda, T., Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2GR3
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 (OXIDIZED FORM)
Descriptor:ferredoxin reductase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Senda, T., Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A ferredoxin reductase BphA4 uses a butterfly motion of FAD to regulate affinity for ferredoxin
To be Published
2YVF
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE BPHA4 (HYDROQUINONE)
Descriptor:Ferredoxin reductase, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Senda, T., Senda, M.
Deposit date:2007-04-12
Release date:2007-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2YVG
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CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 (BLUE-SEMIQUINONE)
Descriptor:Ferredoxin reductase, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Senda, T., Senda, M.
Deposit date:2007-04-12
Release date:2007-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
2YVJ
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CRYSTAL STRUCTURE OF THE FERREDOXIN-FERREDOXIN REDUCTASE (BPHA3-BPHA4)COMPLEX
Descriptor:Ferredoxin reductase, Biphenyl dioxygenase ferredoxin subunit, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Senda, T., Senda, M.
Deposit date:2007-04-12
Release date:2007-10-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
5X7B
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CRYSTAL STRUCTURE OF SHP2_SH2-CAGA EPIYA_C PEPTIDE COMPLEX
Descriptor:Tyrosine-protein phosphatase non-receptor type 11, CagA
Authors:Senda, M., Senda, T.
Deposit date:2017-02-24
Release date:2017-09-13
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Differential Mechanisms for SHP2 Binding and Activation Are Exploited by Geographically Distinct Helicobacter pylori CagA Oncoproteins.
Cell Rep, 20, 2017
5X94
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CRYSTAL STRUCTURE OF SHP2_SH2-CAGA EPIYA_D PEPTIDE COMPLEX
Descriptor:Tyrosine-protein phosphatase non-receptor type 11, Cag pathogenicity island protein
Authors:Senda, M., Senda, T.
Deposit date:2017-03-05
Release date:2017-09-13
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Differential Mechanisms for SHP2 Binding and Activation Are Exploited by Geographically Distinct Helicobacter pylori CagA Oncoproteins.
Cell Rep, 20, 2017
2E50
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CRYSTAL STRUCTURE OF SET/TAF-1BETA/INHAT
Descriptor:Protein SET, TREHALOSE
Authors:Muto, S., Senda, M., Senda, T., Horikoshi, M.
Deposit date:2006-12-18
Release date:2007-02-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Relationship between the structure of SET/TAF-Ibeta/INHAT and its histone chaperone activity
Proc.Natl.Acad.Sci.Usa, 104, 2007
3WKU
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CRYSTAL STRUCTURE OF THE ANAEROBIC DESB-GALLATE COMPLEX
Descriptor:Gallate dioxygenase, FE (III) ION, 3,4,5-trihydroxybenzoic acid
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2013-10-31
Release date:2014-04-30
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WPM
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CRYSTAL STRUCTURE OF THE ANAEROBIC DESB-GALLATE COMPLEX BY CO-CRYSTALLIZATION
Descriptor:Gallate dioxygenase, FE (III) ION, 3,4,5-trihydroxybenzoic acid
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-01-14
Release date:2014-04-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014
3WR3
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CRYSTAL STRUCTURE OF THE ANAEROBIC DESB-GALLATE COMPLEX
Descriptor:Gallate dioxygenase, FE (II) ION, 3,4,5-trihydroxybenzoic acid
Authors:Sugimoto, K., Senda, M., Kasai, D., Fukuda, M., Masai, E., Senda, T.
Deposit date:2014-02-13
Release date:2014-04-30
Last modified:2018-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular Mechanism of Strict Substrate Specificity of an Extradiol Dioxygenase, DesB, Derived from Sphingobium sp. SYK-6
Plos One, 9, 2014