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1J09
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BU of 1j09 by Molmil
Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with ATP and Glu
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLUTAMIC ACID, Glutamyl-tRNA synthetase, ...
Authors:Sekine, S, Nureki, O, Dubois, D.Y, Bernier, S, Chenevert, R, Lapointe, J, Vassylyev, D.G, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-11-12
Release date:2003-02-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding
EMBO J., 22, 2003
1N75
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BU of 1n75 by Molmil
Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with ATP.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Glutamyl-tRNA synthetase, MAGNESIUM ION
Authors:Sekine, S, Nureki, O, Dubois, D.Y, Bernier, S, Chenevert, R, Lapointe, J, Vassylyev, D.G, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-11-12
Release date:2003-02-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding
EMBO J., 22, 2003
1N78
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BU of 1n78 by Molmil
Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and glutamol-AMP.
Descriptor: GLUTAMOL-AMP, Glutamyl-tRNA synthetase, MAGNESIUM ION, ...
Authors:Sekine, S, Nureki, O, Dubois, D.Y, Bernier, S, Chenevert, R, Lapointe, J, Vassylyev, D.G, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-11-13
Release date:2003-02-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding
EMBO J., 22, 2003
1N77
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BU of 1n77 by Molmil
Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and ATP.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Glutamyl-tRNA synthetase, MAGNESIUM ION, ...
Authors:Sekine, S, Nureki, O, Dubois, D.Y, Bernier, S, Chenevert, R, Lapointe, J, Vassylyev, D.G, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-11-13
Release date:2003-02-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding
EMBO J., 22, 2003
1G59
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BU of 1g59 by Molmil
GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(GLU).
Descriptor: GLUTAMYL-TRNA SYNTHETASE, TRNA(GLU)
Authors:Sekine, S, Nureki, O, Shimada, A, Vassylyev, D.G, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2000-10-31
Release date:2001-09-01
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for anticodon recognition by discriminating glutamyl-tRNA synthetase.
Nat.Struct.Biol., 8, 2001
2CV0
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BU of 2cv0 by Molmil
Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu) and L-glutamate
Descriptor: GLUTAMIC ACID, MAGNESIUM ION, glutamyl-tRNA synthetase, ...
Authors:Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-31
Release date:2006-09-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase
Structure, 14, 2006
2CV2
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BU of 2cv2 by Molmil
Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu) and an enzyme inhibitor, Glu-AMS
Descriptor: CHLORIDE ION, MAGNESIUM ION, O5'-(L-GLUTAMYL-SULFAMOYL)-ADENOSINE, ...
Authors:Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-31
Release date:2006-09-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase
Structure, 14, 2006
2CUZ
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BU of 2cuz by Molmil
Glutamyl-tRNA synthetase from Thermus thermophilus in complex with L-glutamate
Descriptor: GLUTAMIC ACID, Glutamyl-tRNA synthetase
Authors:Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-31
Release date:2006-09-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase
Structure, 14, 2006
2DXI
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BU of 2dxi by Molmil
2.2 A crystal structure of glutamyl-tRNA synthetase from Thermus thermophilus complexed with tRNA(Glu), ATP, and L-glutamol
Descriptor: (4S)-4-AMINO-5-HYDROXYPENTANOIC ACID, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-28
Release date:2006-10-31
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase
Structure, 14, 2006
2CV1
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BU of 2cv1 by Molmil
Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu), ATP, and an analog of L-glutamate: a quaternary complex
Descriptor: (4S)-4-AMINO-5-HYDROXYPENTANOIC ACID, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-31
Release date:2006-09-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu), ATP, and an analog of L-glutamate: a quaternary complex
To be Published
2EPG
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BU of 2epg by Molmil
Crystal structure of TTHA1785
Descriptor: Hypothetical protein TTHA1785
Authors:Sekine, S, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2007-10-02
Last modified:2012-11-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the RtcB-like protein from Thermus thermophilus
To be published
2ZAU
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BU of 2zau by Molmil
Crystal structure of an N-terminally truncated selenophosphate synthetase from Aquifex aeolicus
Descriptor: PHOSPHATE ION, Selenide, water dikinase
Authors:Sekine, S, Matsumoto, E, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-10-10
Release date:2008-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of an N-terminally truncated selenophosphate synthetase from Aquifex aeolicus
Acta Crystallogr.,Sect.F, 64, 2008
1GAX
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BU of 1gax by Molmil
CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE
Descriptor: N-[VALINYL]-N'-[ADENOSYL]-DIAMINOSUFONE, TRNA(VAL), VALYL-TRNA SYNTHETASE, ...
Authors:Fukai, S, Nureki, O, Sekine, S, Shimada, A, Tao, J, Vassylyev, D.G, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2000-06-23
Release date:2000-12-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis for double-sieve discrimination of L-valine from L-isoleucine and L-threonine by the complex of tRNA(Val) and valyl-tRNA synthetase.
Cell(Cambridge,Mass.), 103, 2000
1GLN
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BU of 1gln by Molmil
ARCHITECTURES OF CLASS-DEFINING AND SPECIFIC DOMAINS OF GLUTAMYL-TRNA SYNTHETASE
Descriptor: GLUTAMYL-TRNA SYNTHETASE
Authors:Nureki, O, Vassylyev, D.G, Katayanagi, K, Shimizu, T, Sekine, S, Kigawa, T, Miyazawa, T, Yokoyama, S, Morikawa, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1994-07-20
Release date:1995-10-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Architectures of class-defining and specific domains of glutamyl-tRNA synthetase.
Science, 267, 1995
3LLH
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BU of 3llh by Molmil
Crystal structure of the first dsRBD of TAR RNA-binding protein 2
Descriptor: MALONATE ION, RISC-loading complex subunit TARBP2
Authors:Yamashita, S, Kawazoe, M, Takemoto, C, Sekine, S, Wakiyama, M, Yokoyama, S.
Deposit date:2010-01-29
Release date:2010-12-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:The structures of dsRBDs of human TRBP
To be Published
4WRI
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BU of 4wri by Molmil
Crystal structure of okadaic acid binding protein 2.1
Descriptor: OKADAIC ACID, Okadaic acid binding protein 2-alpha
Authors:Ehara, H, Makino, M, Kodama, K, Ito, T, Sekine, S, Fukuzawa, S, Yokoyama, S, Tachibana, K.
Deposit date:2014-10-24
Release date:2015-05-27
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal Structure of Okadaic Acid Binding Protein 2.1: A Sponge Protein Implicated in Cytotoxin Accumulation
Chembiochem, 16, 2015
1IYW
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BU of 1iyw by Molmil
Preliminary Structure of Thermus thermophilus Ligand-Free Valyl-tRNA Synthetase
Descriptor: Valyl-tRNA Synthetase
Authors:Fukai, S, Nureki, O, Sekine, S, Shimada, A, Vassylyev, D.G, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-09-10
Release date:2003-06-17
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (4 Å)
Cite:Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase
RNA, 9, 2003
4ZU9
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BU of 4zu9 by Molmil
Crystal structure of bacterial selenocysteine-specific elongation factor EF-Sec
Descriptor: CYSTEINE, Elongation factor SelB, MAGNESIUM ION, ...
Authors:Itoh, Y, Sekine, S, Yokoyama, S.
Deposit date:2015-05-15
Release date:2015-09-23
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (3.191 Å)
Cite:Crystal structure of the full-length bacterial selenocysteine-specific elongation factor SelB
Nucleic Acids Res., 43, 2015
5B40
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BU of 5b40 by Molmil
The nucleosome structure containing H2B-K120 and H4-K31 monoubiquitinations
Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Machida, S, Sekine, S, Nishiyama, Y, Horikoshi, N, Kurumizaka, H.
Deposit date:2016-03-22
Release date:2016-06-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.33 Å)
Cite:Monoubiquitination of histones H2B and H4 changes the nucleosome stability without affecting the nucleosome structure
To Be Published
3AYH
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BU of 3ayh by Molmil
Crystal structure of the C17/25 subcomplex from S. pombe RNA Polymerase III
Descriptor: DNA-directed RNA polymerase III subunit rpc8, DNA-directed RNA polymerase III subunit rpc9, SULFATE ION
Authors:Ehara, H, Sekine, S, Yokoyama, S.
Deposit date:2011-05-06
Release date:2011-07-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.193 Å)
Cite:Crystal structure of the C17/25 subcomplex from Schizosaccharomyces pombe RNA polymerase III
Protein Sci., 20, 2011
3ADC
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BU of 3adc by Molmil
Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 2)
Descriptor: L-seryl-tRNA(Sec) kinase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Itoh, Y, Chiba, S, Sekine, S, Yokoyama, S.
Deposit date:2010-01-18
Release date:2010-07-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine
Mol.Cell, 39, 2010
3ADD
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BU of 3add by Molmil
Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 3)
Descriptor: L-seryl-tRNA(Sec) kinase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Itoh, Y, Chiba, S, Sekine, S, Yokoyama, S.
Deposit date:2010-01-18
Release date:2010-07-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine
Mol.Cell, 39, 2010
3ADB
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BU of 3adb by Molmil
Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 1)
Descriptor: L-seryl-tRNA(Sec) kinase, MAGNESIUM ION, PHOSPHATE ION, ...
Authors:Itoh, Y, Chiba, S, Sekine, S, Yokoyama, S.
Deposit date:2010-01-18
Release date:2010-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine
Mol.Cell, 39, 2010
3A98
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BU of 3a98 by Molmil
Crystal structure of the complex of the interacting regions of DOCK2 and ELMO1
Descriptor: Dedicator of cytokinesis protein 2, Engulfment and cell motility protein 1
Authors:Hanawa-Suetsugu, K, Kukimoto-Niino, M, Sekine, S, Ito, T, Mishima-Tsumagari, C, Terada, T, Shirouzu, M, Fukui, Y, Yokoyama, S.
Deposit date:2009-10-21
Release date:2010-10-27
Last modified:2019-09-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for mutual relief of the Rac guanine nucleotide exchange factor DOCK2 and its partner ELMO1 from their autoinhibited forms.
Proc.Natl.Acad.Sci.USA, 109, 2012
2YX0
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BU of 2yx0 by Molmil
Crystal structure of P. horikoshii TYW1
Descriptor: radical sam enzyme
Authors:Goto-Ito, S, Ishii, R, Ito, T, Shibata, R, Fusatomi, E, Sekine, S, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-23
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structure of an archaeal TYW1, the enzyme catalyzing the second step of wye-base biosynthesis
Acta Crystallogr.,Sect.D, 63, 2007

217705

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