Author results

1J09
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH ATP AND GLU
Descriptor:Glutamyl-tRNA synthetase, MAGNESIUM ION, GLUTAMIC ACID, ...
Authors:Sekine, S., Nureki, O., Dubois, D.Y., Bernier, S., Chenevert, R., Lapointe, J., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-11-12
Release date:2003-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding
EMBO J., 22, 2003
1N75
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH ATP.
Descriptor:Glutamyl-tRNA synthetase, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE
Authors:Sekine, S., Nureki, O., Dubois, D.Y., Bernier, S., Chenevert, R., Lapointe, J., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-11-12
Release date:2003-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding
EMBO J., 22, 2003
1N77
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(GLU) AND ATP.
Descriptor:tRNA(Glu), Glutamyl-tRNA synthetase, MAGNESIUM ION, ...
Authors:Sekine, S., Nureki, O., Dubois, D.Y., Bernier, S., Chenevert, R., Lapointe, J., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-11-13
Release date:2003-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding
EMBO J., 22, 2003
1N78
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(GLU) AND GLUTAMOL-AMP.
Descriptor:tRNA(Glu), Glutamyl-tRNA synthetase, MAGNESIUM ION, ...
Authors:Sekine, S., Nureki, O., Dubois, D.Y., Bernier, S., Chenevert, R., Lapointe, J., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-11-13
Release date:2003-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding
EMBO J., 22, 2003
1G59
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GLUTAMYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(GLU).
Descriptor:TRNA(GLU), GLUTAMYL-TRNA SYNTHETASE
Authors:Sekine, S., Nureki, O., Shimada, A., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2000-10-31
Release date:2001-09-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for anticodon recognition by discriminating glutamyl-tRNA synthetase.
Nat.Struct.Biol., 8, 2001
2CUZ
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GLUTAMYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH L-GLUTAMATE
Descriptor:Glutamyl-tRNA synthetase, GLUTAMIC ACID
Authors:Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-31
Release date:2006-09-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase
Structure, 14, 2006
2CV0
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GLUTAMYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH TRNA(GLU) AND L-GLUTAMATE
Descriptor:tRNA, glutamyl-tRNA synthetase, MAGNESIUM ION, ...
Authors:Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-31
Release date:2006-09-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase
Structure, 14, 2006
2CV1
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GLUTAMYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH TRNA(GLU), ATP, AND AN ANALOG OF L-GLUTAMATE: A QUATERNARY COMPLEX
Descriptor:tRNA, glutamyl-tRNA synthetase, MAGNESIUM ION, ...
Authors:Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-31
Release date:2006-09-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Glutamyl-tRNA synthetase from Thermus thermophilus in complex with tRNA(Glu), ATP, and an analog of L-glutamate: a quaternary complex
To be Published
2CV2
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GLUTAMYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS IN COMPLEX WITH TRNA(GLU) AND AN ENZYME INHIBITOR, GLU-AMS
Descriptor:tRNA, glutamyl-tRNA synthetase, MAGNESIUM ION, ...
Authors:Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-31
Release date:2006-09-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase
Structure, 14, 2006
2DXI
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2.2 A CRYSTAL STRUCTURE OF GLUTAMYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH TRNA(GLU), ATP, AND L-GLUTAMOL
Descriptor:tRNA, glutamyl-tRNA synthetase, MAGNESIUM ION, ...
Authors:Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-28
Release date:2006-10-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase
Structure, 14, 2006
2EPG
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CRYSTAL STRUCTURE OF TTHA1785
Descriptor:Hypothetical protein TTHA1785
Authors:Sekine, S., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2007-10-02
Last modified:2012-11-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the RtcB-like protein from Thermus thermophilus
To be published
2ZAU
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CRYSTAL STRUCTURE OF AN N-TERMINALLY TRUNCATED SELENOPHOSPHATE SYNTHETASE FROM AQUIFEX AEOLICUS
Descriptor:Selenide, water dikinase, PHOSPHATE ION
Authors:Sekine, S., Matsumoto, E., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-10-10
Release date:2008-06-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of an N-terminally truncated selenophosphate synthetase from Aquifex aeolicus
Acta Crystallogr.,Sect.F, 64, 2008
1UEB
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CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR P FROM THERMUS THERMOPHILUS HB8
Descriptor:elongation factor P
Authors:Hanawa-Suetsugu, K., Sekine, S., Sakai, H., Hori-Takemoto, C., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-09
Release date:2004-05-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of elongation factor P from Thermus thermophilus HB8
Proc.Natl.Acad.Sci.USA, 101, 2004
1GAX
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CRYSTAL STRUCTURE OF THERMUS THERMOPHILUS VALYL-TRNA SYNTHETASE COMPLEXED WITH TRNA(VAL) AND VALYL-ADENYLATE ANALOGUE
Descriptor:TRNA(VAL), VALYL-TRNA SYNTHETASE, ZINC ION, ...
Authors:Fukai, S., Nureki, O., Sekine, S., Shimada, A., Tao, J., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2000-06-23
Release date:2000-12-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis for double-sieve discrimination of L-valine from L-isoleucine and L-threonine by the complex of tRNA(Val) and valyl-tRNA synthetase.
Cell(Cambridge,Mass.), 103, 2000
1GLN
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ARCHITECTURES OF CLASS-DEFINING AND SPECIFIC DOMAINS OF GLUTAMYL-TRNA SYNTHETASE
Descriptor:GLUTAMYL-TRNA SYNTHETASE
Authors:Nureki, O., Vassylyev, D.G., Katayanagi, K., Shimizu, T., Sekine, S., Kigawa, T., Miyazawa, T., Yokoyama, S., Morikawa, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1994-07-20
Release date:1995-10-15
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Architectures of class-defining and specific domains of glutamyl-tRNA synthetase.
Science, 267, 1995
1IYW
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PRELIMINARY STRUCTURE OF THERMUS THERMOPHILUS LIGAND-FREE VALYL-TRNA SYNTHETASE
Descriptor:Valyl-tRNA Synthetase
Authors:Fukai, S., Nureki, O., Sekine, S., Shimada, A., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-09-10
Release date:2003-06-17
Last modified:2018-02-07
Method:X-RAY DIFFRACTION (4 Å)
Cite:Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase
RNA, 9, 2003
1SMY
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STRUCTURAL BASIS FOR TRANSCRIPTION REGULATION BY ALARMONE PPGPP
Descriptor:DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
Authors:Artsimovitch, I., Patlan, V., Sekine, S., Vassylyeva, M.N., Hosaka, T., Ochi, K., Yokoyama, S., Vassylyev, D.G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-03-10
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for transcription regulation by alarmone ppGpp
Cell(Cambridge,Mass.), 117, 2004
1UC8
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CRYSTAL STRUCTURE OF A LYSINE BIOSYNTHESIS ENZYME, LYSX, FROM THERMUS THERMOPHILUS HB8
Descriptor:lysine biosynthesis enzyme
Authors:Sakai, H., Vassylyeva, M.N., Matsuura, T., Sekine, S., Nishiyama, M., Terada, T., Shirouzu, M., Kuramitsu, S., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-04-09
Release date:2003-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of a Lysine Biosynthesis Enzyme, LysX, from Thermus thermophilus HB8
J.Mol.Biol., 332, 2003
1UC9
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CRYSTAL STRUCTURE OF A LYSINE BIOSYNTHESIS ENZYME, LYSX, FROM THERMUS THERMOPHILUS HB8
Descriptor:lysine biosynthesis enzyme, ADENOSINE-5'-DIPHOSPHATE
Authors:Sakai, H., Vassylyeva, M.N., Matsuura, T., Sekine, S., Nishiyama, M., Terada, T., Shirouzu, M., Kuramitsu, S., Vassylyev, D.G., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-04-09
Release date:2003-09-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Crystal Structure of a Lysine Biosynthesis Enzyme, LysX, from Thermus thermophilus HB8
J.Mol.Biol., 332, 2003
1WDT
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CRYSTAL STRUCTURE OF TTK003000868 FROM THERMUS THERMOPHILUS HB8
Descriptor:elongation factor G homolog, MAGNESIUM ION, GUANOSINE-5'-TRIPHOSPHATE
Authors:Wang, H., Takemoto-Hori, C., Murayama, K., Sekine, S., Terada, T., Shirouzu, M., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-17
Release date:2005-05-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of ttk003000868 from Thermus thermophilus HB8
To be published
1WF3
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CRYSTAL STRUCTURE OF GTP-BINDING PROTEIN TT1341 FROM THERMUS THERMOPHILUS HB8
Descriptor:GTP-binding protein, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Kawazoe, M., Hori-Takemoto, C., Kaminishi, T., Sekine, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-25
Release date:2004-11-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Crystal structure of GTP-binding protein TT1341 from Thermus thermophilus HB8
To be Published
1WNF
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CRYSTAL STRUCTURE OF PH0066 FROM PYROCOCCUS HORIKOSHII
Descriptor:L-asparaginase, 1,2-ETHANEDIOL
Authors:Ihsanawati, Sekine, S., Murayama, K., Sugawara, M., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-08-02
Release date:2005-02-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of PH0066 from Pyrococcus horikoshii
To be Published
1WWR
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CRYSTAL STRUCTURE OF TRNA ADENOSINE DEAMINASE TADA FROM AQUIFEX AEOLICUS
Descriptor:tRNA adenosine deaminase TadA, ZINC ION
Authors:Kuratani, M., Ishii, R., Bessho, Y., Fukunaga, R., Sengoku, T., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-01-12
Release date:2005-02-01
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of tRNA Adenosine Deaminase (TadA) from Aquifex aeolicus
J.Biol.Chem., 280, 2005
1X54
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CRYSTAL STRUCTURE OF ASPARAGINYL-TRNA SYNTHETASE FROM PYROCOCCUS HORIKOSHII COMPLEXED WITH ASPARAGINYL-ADENYLATE
Descriptor:Asparaginyl-tRNA synthetase, MAGNESIUM ION, 4-AMINO-1,4-DIOXOBUTAN-2-AMINIUM ADENOSINE-5'-MONOPHOSPHATE, ...
Authors:Iwasaki, W., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-15
Release date:2006-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural Basis of the Water-assisted Asparagine Recognition by Asparaginyl-tRNA Synthetase.
J.Mol.Biol., 360, 2006
1X55
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CRYSTAL STRUCTURE OF ASPARAGINYL-TRNA SYNTHETASE FROM PYROCOCCUS HORIKOSHII COMPLEXED WITH ASPARAGINYL-ADENYLATE ANALOGUE
Descriptor:Asparaginyl-tRNA synthetase, PHOSPHATE ION, MAGNESIUM ION, ...
Authors:Iwasaki, W., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-15
Release date:2006-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis of the Water-assisted Asparagine Recognition by Asparaginyl-tRNA Synthetase.
J.Mol.Biol., 360, 2006