Author results

1D76
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CRYSTAL AND MOLECULAR STRUCTURE OF A DNA FRAGMENT CONTAINING A 2-AMINO ADENINE MODIFICATION: THE RELATIONSHIP BETWEEN CONFORMATION, PACKING, AND HYDRATION IN Z-DNA HEXAMERS
Descriptor:DNA (5'-D(*CP*GP*UP*(1AP)P*CP*G)-3')
Authors:Schneider, B., Ginell, S.L., Jones, R., Gaffney, B., Berman, H.M.
Deposit date:1992-05-19
Release date:1992-09-15
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Crystal and molecular structure of a DNA fragment containing a 2-aminoadenine modification: the relationship between conformation, packing, and hydration in Z-DNA hexamers.
Biochemistry, 31, 1992
1HHQ
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ROLE OF ACTIVE SITE RESIUDE LYS16 IN NUCLEOSIDE DIPHOSPHATE KINASE
Descriptor:NUCLEOSIDE DIPHOSPHATE KINASE, SULFATE ION
Authors:Schneider, B., Babolat, M., Xu, Y.W., Janin, J., Veron, M., Deville-Bonne, D.
Deposit date:2000-12-26
Release date:2001-05-31
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Mechanism of Phosphoryl Transfer by Nucleoside Diphosphate Kinase Ph-Dependence and Role of Active Site Lys16 and Tyr56 Residues
Eur.J.Biochem., 268, 2001
1BUX
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3'-PHOSPHORYLATED NUCLEOTIDES BINDING TO NUCLEOSIDE DIPHOSPHATE KINASE
Descriptor:NUCLEOSIDE DIPHOSPHATE KINASE, 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE
Authors:Xu, Y., Schneider, B., Deville-Bonne, D., Veron, M., Janin, J.
Deposit date:1998-09-07
Release date:1999-04-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:3'-Phosphorylated nucleotides are tight binding inhibitors of nucleoside diphosphate kinase activity.
J.Biol.Chem., 273, 1998
1F3F
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STRUCTURE OF THE H122G NUCLEOSIDE DIPHOSPHATE KINASE / D4T-TRIPHOSPHATE.MG COMPLEX
Descriptor:PROTEIN (NUCLEOSIDE DIPHOSPHATE KINASE), MAGNESIUM ION, 2',3'-DEHYDRO-2',3'-DEOXY-THYMIDINE 5'-TRIPHOSPHATE, ...
Authors:Meyer, P., Schneider, B., Sarfati, S., Deville-Bonne, D., Guerreiro, C., Boretto, J., Janin, J., Veron, M., Canard, B.
Deposit date:2000-06-02
Release date:2000-09-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis for activation of alpha-boranophosphate nucleotide analogues targeting drug-resistant reverse transcriptase.
EMBO J., 19, 2000
1F6T
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STRUCTURE OF THE NUCLEOSIDE DIPHOSPHATE KINASE/ALPHA-BORANO(RP)-TDP.MG COMPLEX
Descriptor:PROTEIN (NUCLEOSIDE DIPHOSPHATE KINASE), MAGNESIUM ION, 2*-DEOXY-THYMIDINE-5*-ALPHA BORANO DIPHOSPHATE (ISOMER RP)
Authors:Guerreiro, C., Boretto, J., Janin, J., Veron, M., Canard, B., Schneider, B., Sarfati, S., Deville-Bonne, D.
Deposit date:2000-06-23
Release date:2000-09-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structural basis for activation of alpha-boranophosphate nucleotide analogues targeting drug-resistant reverse transcriptase.
EMBO J., 19, 2000
1MN9
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NDP KINASE MUTANT (H122G) COMPLEX WITH RTP
Descriptor:NDP kinase, MAGNESIUM ION, RIBAVIRIN TRIPHOSPHATE
Authors:Gallois-montbrun, S., Chen, Y., Dutartre, H., Morera, S., Guerreiro, C., Mulard, L., Schneider, B., Janin, J., Canard, B., Veron, M., Deville-bonne, D.
Deposit date:2002-09-05
Release date:2003-03-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Analysis of the Activation of Ribavirin Analogs by NDP Kinase: Comparison with Other Ribavirin Targets
MOL.PHARMACOL., 63, 2003
5EH1
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CRYSTAL STRUCTURE OF THE EXTRACELLULAR PART OF RECEPTOR 2 OF HUMAN INTERFERON GAMMA
Descriptor:Interferon gamma receptor 2, CYSTEINE, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Kolenko, P., Mikulecky, P., Zahradnik, J., Dohnalek, J., Koval, T., Cerny, J., Necasova, I., Schneider, B.
Deposit date:2015-10-27
Release date:2016-08-17
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of human interferon-gamma receptor 2 reveals the structural basis for receptor specificity.
Acta Crystallogr D Struct Biol, 72, 2016
1HIB
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THE STRUCTURE OF AN INTERLEUKIN-1 BETA MUTANT WITH REDUCED BIOACTIVITY SHOWS MULTIPLE SUBTLE CHANGES IN CONFORMATION THAT AFFECT PROTEIN-PROTEIN RECOGNITION
Descriptor:INTERLEUKIN-1 BETA
Authors:Camacho, N.P., Smith, D.R., Goldman, A., Schneider, B., Green, D., Young, P.R., Berman, H.M.
Deposit date:1993-03-29
Release date:1994-01-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of an interleukin-1 beta mutant with reduced bioactivity shows multiple subtle changes in conformation that affect protein-protein recognition.
Biochemistry, 32, 1993
1HLW
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STRUCTURE OF THE H122A MUTANT OF THE NUCLEOSIDE DIPHOSPHATE KINASE
Descriptor:NUCLEOSIDE DIPHOSPHATE KINASE
Authors:Admiraal, S.J., Meyer, P., Schneider, B., Deville-Bonne, D., Janin, J., Herschlag, D.
Deposit date:2000-12-04
Release date:2001-02-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Chemical rescue of phosphoryl transfer in a cavity mutant: a cautionary tale for site-directed mutagenesis.
Biochemistry, 40, 2001
1MN7
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NDP KINASE MUTANT (H122G;N119S;F64W) IN COMPLEX WITH ABAZTTP
Descriptor:NDP kinase, MAGNESIUM ION, 3'-AZIDO-3'-DEOXY-THYMIDINE-5'-ALPHA BORANO TRIPHOSPHATE
Authors:gallois-montbrun, s., schneider, b., chen, y., giacomoni-fernandes, v., mulard, l., morera, s., janin, j., deville-bonne, d., veron, m.
Deposit date:2002-09-05
Release date:2002-10-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Improving nucleoside diphosphate kinase for antiviral nucleotide analogs activation
J.BIOL.CHEM., 277, 2002
1UCN
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X-RAY STRUCTURE OF HUMAN NUCLEOSIDE DIPHOSPHATE KINASE A COMPLEXED WITH ADP AT 2 A RESOLUTION
Descriptor:nucleoside diphosphate kinase A, PHOSPHATE ION, CALCIUM ION, ...
Authors:Chen, Y., Gallois-Montbrun, S., Schneider, B., Veron, M., Morera, S., Deville-Bonne, D., Janin, J.
Deposit date:2003-04-16
Release date:2003-09-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Nucleotide Binding to Nucleoside Diphosphate Kinases: X-ray Structure of Human NDPK-A in Complex with ADP and Comparison to Protein Kinases
J.Mol.Biol., 332, 2003
362D
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THE STRUCTURE OF D(TGCGCA)2 AND A COMPARISON TO OTHER Z-DNA HEXAMERS
Descriptor:DNA (5'-D(*TP*GP*CP*GP*CP*A)-3'), COBALT HEXAMMINE(III)
Authors:Harper, N.A., Brannigan, J.A., Buck, M., Lewis, R.J., Moore, M.H., Schneider, B.
Deposit date:1997-08-20
Release date:1997-11-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of d(TGCGCA)2 and a comparison to other DNA hexamers.
Acta Crystallogr.,Sect.D, 54, 1998
5EPD
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CRYSTAL STRUCTURE OF GLYCEROL TRINITRATE REDUCTASE XDPB FROM AGROBACTERIUM SP. R89-1 (APO FORM)
Descriptor:Glycerol trinitrate reductase
Authors:Kolenko, P., Zahradnik, J., Zuskova, I., Cerny, J., Palyzova, A., Kyslikova, E., Schneider, B.
Deposit date:2015-11-11
Release date:2016-11-23
Last modified:2019-02-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of XdpB, the bacterial old yellow enzyme, in an FMN-free form.
PLoS ONE, 13, 2018
5O98
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BINARY COMPLEX OF CATHARANTHUS ROSEUS VITROSAMINE SYNTHASE WITH NADP+
Descriptor:Alcohol dehydrogenase 1, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Stavrinides, A.K., Tatsis, E.C., Dang, T.T., Caputi, L., Stevenson, C.E.M., Lawson, D.M., Schneider, B., O'Connor, S.E.
Deposit date:2017-06-16
Release date:2018-02-21
Last modified:2018-05-16
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Discovery of a Short-Chain Dehydrogenase from Catharanthus roseus that Produces a New Monoterpene Indole Alkaloid.
Chembiochem, 19, 2018
6F1E
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CRYSTAL STRUCTURE OF OLIVE FLOUNDER [PARALICHTHYS OLIVACEUS] INTERFERON GAMMA AT 2.3 ANGSTROM RESOLUTION
Descriptor:Interferon gamma
Authors:Kolenko, P., Kolarova, L., Zahradnik, J., Schneider, B.
Deposit date:2017-11-21
Release date:2018-05-23
Last modified:2018-05-30
Method:X-RAY DIFFRACTION (2.296 Å)
Cite:Interferons type II and their receptors R1 and R2 in fish species: Evolution, structure, and function.
Fish Shellfish Immunol., 79, 2018
6GG1
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STRUCTURE OF PROSS_EDITED HUMAN CYTOKINE
Descriptor:Interleukin-24, NICKEL (II) ION, SULFATE ION
Authors:Kolenko, P., Zahradnik, J., Kolarova, L., Schneider, B.
Deposit date:2018-05-02
Release date:2019-05-15
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structure of PROSS_edited human cytokine
To Be Published
2C3Z
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CRYSTAL STRUCTURE OF A TRUNCATED VARIANT OF INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE FROM SULFOLOBUS SOLFATARICUS
Descriptor:INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE, SULFATE ION
Authors:Schneider, A., Knoechel, T., Darimont, B., Hennig, M., Dietrich, S., Kirschner, K., Sterner, R.
Deposit date:2005-10-13
Release date:2005-10-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Role of the N-Terminal Extension of the (Betaalpha)(8)-Barrel Enzyme Indole-3-Glycerol Phosphate Synthase for its Fold, Stability, and Catalytic Activity.
Biochemistry, 44, 2005
1B4S
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STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE H122G MUTANT
Descriptor:NUCLEOSIDE DIPHOSPHATE KINASE, PHOSPHATE ION, MAGNESIUM ION, ...
Authors:Meyer, P., Janin, J.
Deposit date:1998-12-28
Release date:1999-06-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Nucleophilic activation by positioning in phosphoryl transfer catalyzed by nucleoside diphosphate kinase.
Biochemistry, 38, 1999
1AJU
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HIV-2 TAR-ARGININAMIDE COMPLEX, NMR, 20 STRUCTURES
Descriptor:TAR RNA, ARGININE
Authors:Brodsky, A.S., Williamson, J.R.
Deposit date:1997-05-10
Release date:1997-12-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the HIV-2 TAR-argininamide complex.
J.Mol.Biol., 267, 1997
1AKX
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HIV-2 TRANS ACTIVATING REGION RNA COMPLEX WITH ARGININAMIDE, NMR, MINIMIZED AVERAGE STRUCTURE
Descriptor:TAR RNA, ARGININE
Authors:Brodsky, A.S., Williamson, J.R.
Deposit date:1997-05-27
Release date:1997-11-19
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the HIV-2 TAR-argininamide complex.
J.Mol.Biol., 267, 1997
2F8W
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CRYSTAL STRUCTURE OF D(CACGTG)2
Descriptor:5'-D(*CP*AP*CP*GP*TP*G)-3', SPERMINE, 1,3-DIAMINOPROPANE
Authors:Narayana, N., Shamala, N., Ganesh, K.N., Viswamitra, M.A.
Deposit date:2005-12-04
Release date:2006-01-31
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Interaction between the Z-Type DNA Duplex and 1,3-Propanediamine: Crystal Structure of d(CACGTG)2 at 1.2 A Resolution
Biochemistry, 45, 2006
2HVD
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HUMAN NUCLEOSIDE DIPHOSPHATE KINASE A COMPLEXED WITH ADP
Descriptor:Nucleoside diphosphate kinase A, ADENOSINE-5'-DIPHOSPHATE
Authors:Giraud, M.-F., Georgescauld, F., Lascu, I., Dautant, A.
Deposit date:2006-07-28
Release date:2006-09-19
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal Structures of S120G Mutant and Wild Type of Human Nucleoside Diphosphate Kinase A in Complex with ADP
J.Bioenerg.Biomembr., 38, 2006
2HVE
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S120G MUTANT OF HUMAN NUCLEOSIDE DIPHOSPHATE KINASE A COMPLEXED WITH ADP
Descriptor:Nucleoside diphosphate kinase A, ADENOSINE-5'-DIPHOSPHATE
Authors:Giraud, M.-F., Georgescauld, F., Lascu, I., Dautant, A.
Deposit date:2006-07-28
Release date:2006-09-19
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.402 Å)
Cite:Crystal Structures of S120G Mutant and Wild Type of Human Nucleoside Diphosphate Kinase A in Complex with ADP
J.Bioenerg.Biomembr., 38, 2006