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3A17
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BU of 3a17 by Molmil
Crystal Structure of Aldoxime Dehydratase (OxdRE) in Complex with Butyraldoxime (Co-crystal)
Descriptor: (1Z)-butanal oxime, Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sawai, H, Sugimoto, H, Kato, Y, Asano, Y, Shiro, Y, Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3A15
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BU of 3a15 by Molmil
Crystal Structure of Substrate-Free Form of Aldoxime Dehydratase (OxdRE)
Descriptor: Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sawai, H, Sugimoto, H, Kato, Y, Asano, Y, Shiro, Y, Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3A16
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BU of 3a16 by Molmil
Crystal Structure of Aldoxime Dehydratase (OxdRE) in Complex with Propionaldoxime
Descriptor: (1Z)-propanal oxime, Aldoxime dehydratase, MAGNESIUM ION, ...
Authors:Sawai, H, Sugimoto, H, Kato, Y, Asano, Y, Shiro, Y, Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3A18
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BU of 3a18 by Molmil
Crystal Structure of Aldoxime Dehydratase (OxdRE) in Complex with Butyraldoxime (soaked crystal)
Descriptor: (1Z)-butanal oxime, Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sawai, H, Sugimoto, H, Kato, Y, Asano, Y, Shiro, Y, Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3VOL
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BU of 3vol by Molmil
X-ray Crystal Structure of PAS-HAMP Aer2 in the CN-bound Form
Descriptor: Aerotaxis transducer Aer2, CYANIDE ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sawai, H, Sugimoto, H, Shiro, Y, Aono, S.
Deposit date:2012-01-27
Release date:2012-05-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Structural basis for oxygen sensing and signal transduction of the heme-based sensor protein Aer2 from Pseudomonas aeruginosa
Chem.Commun.(Camb.), 48, 2012
3VOK
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BU of 3vok by Molmil
X-ray Crystal Structure of Wild Type HrtR in the Apo Form with the Target DNA.
Descriptor: 5'-D(*AP*TP*GP*AP*CP*AP*CP*TP*GP*TP*GP*TP*CP*AP*T)-3', Transcriptional regulator
Authors:Sawai, H, Sugimoto, H, Shiro, Y, Aono, S.
Deposit date:2012-01-27
Release date:2012-07-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for the Transcriptional Regulation of Heme Homeostasis in Lactococcus lactis.
J.Biol.Chem., 287, 2012
3VOX
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BU of 3vox by Molmil
X-ray Crystal Structure of Wild Type HrtR in the Apo Form
Descriptor: Transcriptional regulator
Authors:Sawai, H, Sugimoto, H, Shiro, Y, Aono, S.
Deposit date:2012-02-23
Release date:2012-07-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural Basis for the Transcriptional Regulation of Heme Homeostasis in Lactococcus lactis.
J.Biol.Chem., 287, 2012
3VP5
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BU of 3vp5 by Molmil
X-ray Crystal Structure of Wild Type HrtR in the Holo Form
Descriptor: CACODYLATE ION, PROTOPORPHYRIN IX CONTAINING FE, Transcriptional regulator
Authors:Sawai, H, Sugimoto, H, Shiro, Y, Aono, S.
Deposit date:2012-02-23
Release date:2012-07-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for the Transcriptional Regulation of Heme Homeostasis in Lactococcus lactis.
J.Biol.Chem., 287, 2012
1V5H
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BU of 1v5h by Molmil
Crystal Structure of Human Cytoglobin (Ferric Form)
Descriptor: Cytoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugimoto, H, Makino, M, Sawai, H, Kawada, N, Yoshizato, K, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-23
Release date:2004-06-08
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of human cytoglobin for ligand binding.
J.Mol.Biol., 339, 2004
2DC3
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BU of 2dc3 by Molmil
Crystal structure of human cytoglobin at 1.68 angstroms resolution
Descriptor: ACETIC ACID, Cytoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Makino, M, Sugimoto, H, Sawai, H, Kawada, N, Yoshizato, K, Shiro, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-21
Release date:2006-05-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:High-resolution structure of human cytoglobin: identification of extra N- and C-termini and a new dimerization mode.
Acta Crystallogr.,Sect.D, 62, 2006
3AG0
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BU of 3ag0 by Molmil
Crystal structure of carbonmonoxy human cytoglobin
Descriptor: CARBON MONOXIDE, Cytoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Makino, M, Sawai, H, Shiro, Y, Sugimoto, H.
Deposit date:2010-03-17
Release date:2011-02-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the carbon monoxide complex of human cytoglobin
Proteins, 79, 2011
5Y5M
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BU of 5y5m by Molmil
SFX structure of cytochrome P450nor: a complete dark data without pump laser (resting state)
Descriptor: NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tosha, T, Nomura, T, Nishida, T, Saeki, N, Okubayashi, K, Yamagiwa, R, Sugahara, M, Nakane, T, Yamashita, K, Hirata, K, Ueno, G, Kimura, T, Hisano, T, Muramoto, K, Sawai, H, Takeda, H, Mizohata, E, Yamashita, A, Kanematsu, Y, Takano, Y, Nango, E, Tanaka, R, Nureki, O, Ikemoto, Y, Murakami, H, Owada, S, Tono, K, Yabashi, M, Yamamoto, M, Ago, H, Iwata, S, Sugimoto, H, Shiro, Y, Kubo, M.
Deposit date:2017-08-09
Release date:2018-08-08
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5H
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BU of 5y5h by Molmil
SF-ROX structure of cytochrome P450nor (NO-bound state) determined at SACLA
Descriptor: GLYCEROL, NADP nitrous oxide-forming nitric oxide reductase, NITRIC OXIDE, ...
Authors:Tosha, T, Nomura, T, Nishida, T, Yamagiwa, R, Yamashita, K, Hirata, K, Ueno, G, Kimura, T, Hisano, T, Muramoto, K, Sawai, H, Takeda, H, Yamashita, A, Murakami, H, Owada, S, Tono, K, Yabashi, M, Yamamoto, M, Ago, H, Sugimoto, H, Shiro, Y, Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5L
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BU of 5y5l by Molmil
Time-resolved SFX structure of cytochrome P450nor: dark-2 data in the absence of NADH (resting state)
Descriptor: NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tosha, T, Nomura, T, Nishida, T, Saeki, N, Okubayashi, K, Yamagiwa, R, Sugahara, M, Nakane, T, Yamashita, K, Hirata, K, Ueno, G, Kimura, T, Hisano, T, Muramoto, K, Sawai, H, Takeda, H, Mizohata, E, Yamashita, A, Kanematsu, Y, Takano, Y, Nango, E, Tanaka, R, Nureki, O, Ikemoto, Y, Murakami, H, Owada, S, Tono, K, Yabashi, M, Yamamoto, M, Ago, H, Iwata, S, Sugimoto, H, Shiro, Y, Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5I
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BU of 5y5i by Molmil
Time-resolved SFX structure of cytochrome P450nor: 20 ms after photo-irradiation of caged NO in the presence of NADH (NO-bound state), light data
Descriptor: GLYCEROL, NADP nitrous oxide-forming nitric oxide reductase, NITRIC OXIDE, ...
Authors:Tosha, T, Nomura, T, Nishida, T, Saeki, N, Okubayashi, K, Yamagiwa, R, Sugahara, M, Nakane, T, Yamashita, K, Hirata, K, Ueno, G, Kimura, T, Hisano, T, Muramoto, K, Sawai, H, Takeda, H, Mizohata, E, Yamashita, A, Kanematsu, Y, Takano, Y, Nango, E, Tanaka, R, Nureki, O, Ikemoto, Y, Murakami, H, Owada, S, Tono, K, Yabashi, M, Yamamoto, M, Ago, H, Iwata, S, Sugimoto, H, Shiro, Y, Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5J
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BU of 5y5j by Molmil
Time-resolved SFX structure of cytochrome P450nor: dark-2 data in the presence of NADH (resting state)
Descriptor: GLYCEROL, NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tosha, T, Nomura, T, Nishida, T, Saeki, N, Okubayashi, K, Yamagiwa, R, Sugahara, M, Nakane, T, Yamashita, K, Hirata, K, Ueno, G, Kimura, T, Hisano, T, Muramoto, K, Sawai, H, Takeda, H, Mizohata, E, Yamashita, A, Kanematsu, Y, Takano, Y, Nango, E, Tanaka, R, Nureki, O, Ikemoto, Y, Murakami, H, Owada, S, Tono, K, Yabashi, M, Yamamoto, M, Ago, H, Iwata, S, Sugimoto, H, Shiro, Y, Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5K
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BU of 5y5k by Molmil
Time-resolved SFX structure of cytochrome P450nor : 20 ms after photo-irradiation of caged NO in the absence of NADH (NO-bound state), light data
Descriptor: NADP nitrous oxide-forming nitric oxide reductase, NITRIC OXIDE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tosha, T, Nomura, T, Nishida, T, Saeki, N, Okubayashi, K, Yamagiwa, R, Sugahara, M, Nakane, T, Yamashita, K, Hirata, K, Ueno, G, Kimura, T, Hisano, T, Muramoto, K, Sawai, H, Takeda, H, Mizohata, E, Yamashita, A, Kanematsu, Y, Takano, Y, Nango, E, Tanaka, R, Nureki, O, Ikemoto, Y, Murakami, H, Owada, S, Tono, K, Yabashi, M, Yamamoto, M, Ago, H, Iwata, S, Sugimoto, H, Shiro, Y, Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5ZLG
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BU of 5zlg by Molmil
Human duodenal cytochrome b (Dcytb) in zinc ion and ascorbate bound form
Descriptor: ASCORBIC ACID, Cytochrome b reductase 1, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ganasen, M, Togashi, H, Mauk, G.A, Shiro, Y, Sawai, H, Sugimoto, H.
Deposit date:2018-03-27
Release date:2018-10-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for promotion of duodenal iron absorption by enteric ferric reductase with ascorbate.
Commun Biol, 1, 2018
5ZLE
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BU of 5zle by Molmil
Human duodenal cytochrome b (Dcytb) in substrate free form
Descriptor: Cytochrome b reductase 1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Ganasen, M, Togashi, H, Mauk, G.A, Shiro, Y, Sawai, H, Sugimoto, H.
Deposit date:2018-03-27
Release date:2018-10-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for promotion of duodenal iron absorption by enteric ferric reductase with ascorbate.
Commun Biol, 1, 2018
5XSO
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BU of 5xso by Molmil
Crystal structure of full-length FixJ from B. japonicum crystallized in space group C2221
Descriptor: FORMIC ACID, GLYCEROL, Response regulator FixJ
Authors:Nishizono, Y, Hisano, T, Sawai, H, Shiro, Y, Nakamura, H, Wright, G.S.A, Saeki, A, Hikima, T, Yamamoto, M, Antonyuk, S.V, Hasnain, S.S.
Deposit date:2017-06-14
Release date:2018-05-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.778 Å)
Cite:Architecture of the complete oxygen-sensing FixL-FixJ two-component signal transduction system.
Sci Signal, 11, 2018
5XT2
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BU of 5xt2 by Molmil
Crystal structures of full-length FixJ from B. japonicum crystallized in space group P212121
Descriptor: FORMIC ACID, GLYCEROL, MAGNESIUM ION, ...
Authors:Nishizono, Y, Hisano, T, Shiro, Y, Sawai, H, Wright, G.S.A, Saeki, A, Hikima, T, Nakamura, H, Yamamoto, M, Antonyuk, S.V, Hasnain, S.S.
Deposit date:2017-06-16
Release date:2018-05-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.652 Å)
Cite:Architecture of the complete oxygen-sensing FixL-FixJ two-component signal transduction system.
Sci Signal, 11, 2018
7DVU
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BU of 7dvu by Molmil
Crystal structure of heme sensor protein PefR in complex with heme and cyanide
Descriptor: CYANIDE ION, HTH marR-type domain-containing protein, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nishinaga, M, Nagai, S, Nishitani, Y, Sugimoto, H, Shiro, Y, Sawai, H.
Deposit date:2021-01-15
Release date:2021-09-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival.
Commun Biol, 4, 2021
7DVR
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BU of 7dvr by Molmil
Crystal structure of heme sensor protein PefR from Streptococcus agalactiae in complex with heme
Descriptor: COBALT (II) ION, HTH marR-type domain-containing protein, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nishinaga, M, Nagai, S, Nishitani, Y, Sugimoto, H, Shiro, Y, Sawai, H.
Deposit date:2021-01-15
Release date:2021-09-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival.
Commun Biol, 4, 2021
7DVV
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BU of 7dvv by Molmil
Heme sensor protein PefR from Streptococcus agalactiae bound to operator DNA (28-mer)
Descriptor: DNA (28-MER), HTH marR-type domain-containing protein
Authors:Nishinaga, M, Nagai, S, Nishitani, Y, Sugimoto, H, Shiro, Y, Sawai, H.
Deposit date:2021-01-15
Release date:2021-09-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival.
Commun Biol, 4, 2021
7DVT
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BU of 7dvt by Molmil
Crystal structure of heme sensor protein PefR in complex with heme and carbon monoxide
Descriptor: CARBON MONOXIDE, HTH marR-type domain-containing protein, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nishinaga, M, Nagai, S, Nishitani, Y, Sugimoto, H, Shiro, Y, Sawai, H.
Deposit date:2021-01-15
Release date:2021-09-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Heme controls the structural rearrangement of its sensor protein mediating the hemolytic bacterial survival.
Commun Biol, 4, 2021

 

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