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3VOL
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X-RAY CRYSTAL STRUCTURE OF PAS-HAMP AER2 IN THE CN-BOUND FORM
Descriptor:Aerotaxis transducer Aer2, PROTOPORPHYRIN IX CONTAINING FE, CYANIDE ION
Authors:Sawai, H., Sugimoto, H., Shiro, Y., Aono, S.
Deposit date:2012-01-27
Release date:2012-05-23
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Structural basis for oxygen sensing and signal transduction of the heme-based sensor protein Aer2 from Pseudomonas aeruginosa
Chem.Commun.(Camb.), 48, 2012
3A15
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CRYSTAL STRUCTURE OF SUBSTRATE-FREE FORM OF ALDOXIME DEHYDRATASE (OXDRE)
Descriptor:Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sawai, H., Sugimoto, H., Kato, Y., Asano, Y., Shiro, Y., Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3A16
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CRYSTAL STRUCTURE OF ALDOXIME DEHYDRATASE (OXDRE) IN COMPLEX WITH PROPIONALDOXIME
Descriptor:Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE, (1Z)-propanal oxime, ...
Authors:Sawai, H., Sugimoto, H., Kato, Y., Asano, Y., Shiro, Y., Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3A17
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CRYSTAL STRUCTURE OF ALDOXIME DEHYDRATASE (OXDRE) IN COMPLEX WITH BUTYRALDOXIME (CO-CRYSTAL)
Descriptor:Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE, (1Z)-butanal oxime
Authors:Sawai, H., Sugimoto, H., Kato, Y., Asano, Y., Shiro, Y., Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3A18
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CRYSTAL STRUCTURE OF ALDOXIME DEHYDRATASE (OXDRE) IN COMPLEX WITH BUTYRALDOXIME (SOAKED CRYSTAL)
Descriptor:Aldoxime dehydratase, PROTOPORPHYRIN IX CONTAINING FE, (1Z)-butanal oxime
Authors:Sawai, H., Sugimoto, H., Kato, Y., Asano, Y., Shiro, Y., Aono, S.
Deposit date:2009-03-26
Release date:2009-09-08
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystal structure of michaelis complex of aldoxime dehydratase
J.Biol.Chem., 284, 2009
3VOK
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X-RAY CRYSTAL STRUCTURE OF WILD TYPE HRTR IN THE APO FORM WITH THE TARGET DNA.
Descriptor:Transcriptional regulator, 5'-D(*AP*TP*GP*AP*CP*AP*CP*TP*GP*TP*GP*TP*CP*AP*T)-3'
Authors:Sawai, H., Sugimoto, H., Shiro, Y., Aono, S.
Deposit date:2012-01-27
Release date:2012-07-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for the Transcriptional Regulation of Heme Homeostasis in Lactococcus lactis.
J.Biol.Chem., 287, 2012
3VOX
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X-RAY CRYSTAL STRUCTURE OF WILD TYPE HRTR IN THE APO FORM
Descriptor:Transcriptional regulator
Authors:Sawai, H., Sugimoto, H., Shiro, Y., Aono, S.
Deposit date:2012-02-23
Release date:2012-07-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural Basis for the Transcriptional Regulation of Heme Homeostasis in Lactococcus lactis.
J.Biol.Chem., 287, 2012
3VP5
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X-RAY CRYSTAL STRUCTURE OF WILD TYPE HRTR IN THE HOLO FORM
Descriptor:Transcriptional regulator, PROTOPORPHYRIN IX CONTAINING FE, CACODYLATE ION
Authors:Sawai, H., Sugimoto, H., Shiro, Y., Aono, S.
Deposit date:2012-02-23
Release date:2012-07-25
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for the Transcriptional Regulation of Heme Homeostasis in Lactococcus lactis.
J.Biol.Chem., 287, 2012
1V5H
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CRYSTAL STRUCTURE OF HUMAN CYTOGLOBIN (FERRIC FORM)
Descriptor:Cytoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Sugimoto, H., Makino, M., Sawai, H., Kawada, N., Yoshizato, K., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-11-23
Release date:2004-06-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of human cytoglobin for ligand binding.
J.Mol.Biol., 339, 2004
5Y5H
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SF-ROX STRUCTURE OF CYTOCHROME P450NOR (NO-BOUND STATE) DETERMINED AT SACLA
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE, NITRIC OXIDE, ...
Authors:Tosha, T., Nomura, T., Nishida, T., Yamagiwa, R., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Yamashita, A., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5I
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TIME-RESOLVED SFX STRUCTURE OF CYTOCHROME P450NOR: 20 MS AFTER PHOTO-IRRADIATION OF CAGED NO IN THE PRESENCE OF NADH (NO-BOUND STATE), LIGHT DATA
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE, NITRIC OXIDE, ...
Authors:Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5J
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TIME-RESOLVED SFX STRUCTURE OF CYTOCHROME P450NOR: DARK-2 DATA IN THE PRESENCE OF NADH (RESTING STATE)
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE, GLYCEROL
Authors:Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5K
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TIME-RESOLVED SFX STRUCTURE OF CYTOCHROME P450NOR : 20 MS AFTER PHOTO-IRRADIATION OF CAGED NO IN THE ABSENCE OF NADH (NO-BOUND STATE), LIGHT DATA
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE, NITRIC OXIDE
Authors:Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5L
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TIME-RESOLVED SFX STRUCTURE OF CYTOCHROME P450NOR: DARK-2 DATA IN THE ABSENCE OF NADH (RESTING STATE)
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5M
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SFX STRUCTURE OF CYTOCHROME P450NOR: A COMPLETE DARK DATA WITHOUT PUMP LASER (RESTING STATE)
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tosha, T., Nomura, T., Nishida, T., Saeki, N., Okubayashi, K., Yamagiwa, R., Sugahara, M., Nakane, T., Yamashita, K., Hirata, K., Ueno, G., Kimura, T., Hisano, T., Muramoto, K., Sawai, H., Takeda, H., Mizohata, E., Yamashita, A., Kanematsu, Y., Takano, Y., Nango, E., Tanaka, R., Nureki, O., Ikemoto, Y., Murakami, H., Owada, S., Tono, K., Yabashi, M., Yamamoto, M., Ago, H., Iwata, S., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2018-08-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5ZLE
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HUMAN DUODENAL CYTOCHROME B (DCYTB) IN SUBSTRATE FREE FORM
Descriptor:Cytochrome b reductase 1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Ganasen, M., Togashi, H., Mauk, G.A., Shiro, Y., Sawai, H., Sugimoto, H.
Deposit date:2018-03-27
Release date:2018-10-31
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for promotion of duodenal iron absorption by enteric ferric reductase with ascorbate.
Commun Biol, 1, 2018
5ZLG
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HUMAN DUODENAL CYTOCHROME B (DCYTB) IN ZINC ION AND ASCORBATE BOUND FORM
Descriptor:Cytochrome b reductase 1, PROTOPORPHYRIN IX CONTAINING FE, ZINC ION, ...
Authors:Ganasen, M., Togashi, H., Mauk, G.A., Shiro, Y., Sawai, H., Sugimoto, H.
Deposit date:2018-03-27
Release date:2018-10-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for promotion of duodenal iron absorption by enteric ferric reductase with ascorbate.
Commun Biol, 1, 2018
5XSO
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CRYSTAL STRUCTURE OF FULL-LENGTH FIXJ FROM B. JAPONICUM CRYSTALLIZED IN SPACE GROUP C2221
Descriptor:Response regulator FixJ, GLYCEROL, FORMIC ACID
Authors:Nishizono, Y., Hisano, T., Sawai, H., Shiro, Y., Nakamura, H., Wright, G.S.A., Saeki, A., Hikima, T., Yamamoto, M., Antonyuk, S.V., Hasnain, S.S.
Deposit date:2017-06-14
Release date:2018-05-23
Method:X-RAY DIFFRACTION (1.778 Å)
Cite:Architecture of the complete oxygen-sensing FixL-FixJ two-component signal transduction system.
Sci Signal, 11, 2018
5XT2
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CRYSTAL STRUCTURES OF FULL-LENGTH FIXJ FROM B. JAPONICUM CRYSTALLIZED IN SPACE GROUP P212121
Descriptor:Response regulator FixJ, MAGNESIUM ION, GLYCEROL, ...
Authors:Nishizono, Y., Hisano, T., Shiro, Y., Sawai, H., Wright, G.S.A., Saeki, A., Hikima, T., Nakamura, H., Yamamoto, M., Antonyuk, S.V., Hasnain, S.S.
Deposit date:2017-06-16
Release date:2018-05-23
Method:X-RAY DIFFRACTION (2.652 Å)
Cite:Architecture of the complete oxygen-sensing FixL-FixJ two-component signal transduction system.
Sci Signal, 11, 2018
2DC3
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CRYSTAL STRUCTURE OF HUMAN CYTOGLOBIN AT 1.68 ANGSTROMS RESOLUTION
Descriptor:Cytoglobin, PROTOPORPHYRIN IX CONTAINING FE, ACETIC ACID
Authors:Makino, M., Sugimoto, H., Sawai, H., Kawada, N., Yoshizato, K., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-12-21
Release date:2006-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:High-resolution structure of human cytoglobin: identification of extra N- and C-termini and a new dimerization mode.
Acta Crystallogr.,Sect.D, 62, 2006
3AG0
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CRYSTAL STRUCTURE OF CARBONMONOXY HUMNAN CYTOGLOBIN
Descriptor:Cytoglobin, PROTOPORPHYRIN IX CONTAINING FE, CARBON MONOXIDE
Authors:Makino, M., Sawai, H., Shiro, Y., Sugimoto, H.
Deposit date:2010-03-17
Release date:2011-02-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the carbon monoxide complex of human cytoglobin
Proteins, 79, 2011
5Y5F
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STRUCTURE OF CYTOCHROME P450NOR IN NO-BOUND STATE: DAMAGED BY LOW-DOSE (0.72 MGY) X-RAY
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE, NITRIC OXIDE, ...
Authors:Tosha, T., Nomura, T., Nishida, T., Ueno, G., Murakami, H., Yamashita, K., Hirata, K., Yamamoto, M., Ago, H., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Last modified:2018-09-19
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5Y5G
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STRUCTURE OF CYTOCHROME P450NOR IN NO-BOUND STATE: DAMAGED BY LOW-DOSE (0.72 MGY) X-RAY
Descriptor:NADP nitrous oxide-forming nitric oxide reductase, PROTOPORPHYRIN IX CONTAINING FE, NITRIC OXIDE, ...
Authors:Tosha, T., Nomura, T., Nishida, T., Ueno, G., Murakami, H., Yamashita, K., Hirata, K., Yamamoto, M., Ago, H., Sugimoto, H., Shiro, Y., Kubo, M.
Deposit date:2017-08-09
Release date:2017-12-06
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate.
Nat Commun, 8, 2017
5GUW
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COMPLEX OF CYTOCHROME CD1 NITRITE REDUCTASE AND NITRIC OXIDE REDUCTASE IN DENITRIFICATION OF PSEUDOMONAS AERUGINOSA
Descriptor:Nitric oxide reductase subunit C, Nitric oxide reductase subunit B, Nitrite reductase, ...
Authors:Terasaka, E., Sugimoto, H., Shiro, Y., Tosha, T.
Deposit date:2016-08-31
Release date:2017-08-16
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Dynamics of nitric oxide controlled by protein complex in bacterial system
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5GUX
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CYTOCHROME C-DEPENDENT NITRIC OXIDE REDUCTASE (CNOR) FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH XENON
Descriptor:Antibody fab fragment light chain, Antibody fab fragment heavy chain, Nitric oxide reductase subunit B, ...
Authors:Ishii, S., Terasaka, E., Sugimoto, H., Shiro, Y., Tosha, T.
Deposit date:2016-08-31
Release date:2017-08-16
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Dynamics of nitric oxide controlled by protein complex in bacterial system.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017