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5H18
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BU of 5h18 by Molmil
Crystal structure of catalytic domain of UGGT (UDP-glucose-bound form) from Thermomyces dupontii
Descriptor: CALCIUM ION, GLYCEROL, UGGT, ...
Authors:Satoh, T, Zhu, T, Toshimori, T, Kamikubo, H, Uchihashi, T, Kato, K.
Deposit date:2016-10-08
Release date:2017-09-27
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT.
Sci Rep, 7, 2017
5JQP
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BU of 5jqp by Molmil
Crystal structure of ER glucosidase II heterodimeric complex consisting of catalytic subunit and the binding domain of regulatory subunit
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha glucosidase-like protein, CALCIUM ION, ...
Authors:Satoh, T, Toshimori, T, Noda, M, Uchiyama, S, Kato, K.
Deposit date:2016-05-05
Release date:2016-09-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Interaction mode between catalytic and regulatory subunits in glucosidase II involved in ER glycoprotein quality control.
Protein Sci., 25, 2016
4YGE
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BU of 4yge by Molmil
Crystal structure of ERGIC-53/MCFD2, trigonal calcium-bound form 2
Descriptor: CALCIUM ION, CHLORIDE ION, Multiple coagulation factor deficiency protein 2, ...
Authors:Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K.
Deposit date:2015-02-26
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport.
Acta Crystallogr.,Sect.F, 76, 2020
4YGB
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BU of 4ygb by Molmil
Crystal structure of ERGIC-53/MCFD2, monoclinic calcium-free form
Descriptor: CALCIUM ION, GLYCEROL, Multiple coagulation factor deficiency protein 2, ...
Authors:Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K.
Deposit date:2015-02-26
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport.
Acta Crystallogr.,Sect.F, 76, 2020
4YGC
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BU of 4ygc by Molmil
Crystal structure of ERGIC-53/MCFD2, monoclinic calcium-bound form 1
Descriptor: CALCIUM ION, CHLORIDE ION, Multiple coagulation factor deficiency protein 2, ...
Authors:Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K.
Deposit date:2015-02-26
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport.
Acta Crystallogr.,Sect.F, 76, 2020
4YGD
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BU of 4ygd by Molmil
Crystal structure of ERGIC-53/MCFD2, monoclinic calcium-bound form 2
Descriptor: CALCIUM ION, CHLORIDE ION, Multiple coagulation factor deficiency protein 2, ...
Authors:Satoh, T, Nishio, M, Yagi-Utsumi, M, Suzuki, K, Anzai, T, Mizushima, T, Kamiya, Y, Kato, K.
Deposit date:2015-02-26
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Crystallographic snapshots of the EF-hand protein MCFD2 complexed with the intracellular lectin ERGIC-53 involved in glycoprotein transport.
Acta Crystallogr.,Sect.F, 76, 2020
3LIV
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BU of 3liv by Molmil
crystal structure of HTLV protease complexed with the inhibitor KNI-10683
Descriptor: (4R)-3-[(2S,3S)-3-[[(2S)-2-[[(2S)-2-azanyl-2-phenyl-ethanoyl]amino]-3,3-dimethyl-butanoyl]amino]-2-hydroxy-4-phenyl-but anoyl]-N-[(2R)-3,3-dimethylbutan-2-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide, Protease
Authors:Satoh, T, Li, M, Nguyen, J, Kiso, Y, Wlodawer, A, Gustchina, A.
Deposit date:2010-01-25
Release date:2010-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal structures of inhibitor complexes of human T-cell leukemia virus (HTLV-1) protease.
J.Mol.Biol., 401, 2010
3LIT
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BU of 3lit by Molmil
The crystal structure of htlv protease complexed with the inhibitor KNI-10681
Descriptor: (4R)-3-[(2S,3S)-3-[[(2S)-2-[[(2S)-2-azanyl-2-phenyl-ethanoyl]amino]-3,3-dimethyl-butanoyl]amino]-2-hydroxy-4-phenyl-but anoyl]-5,5-dimethyl-N-[(2R)-3-methylbutan-2-yl]-1,3-thiazolidine-4-carboxamide, Protease
Authors:Satoh, T, Li, M, Nguyen, J, Kiso, Y, Wlodawer, A, Gustchina, A.
Deposit date:2010-01-25
Release date:2010-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Crystal structures of inhibitor complexes of human T-cell leukemia virus (HTLV-1) protease.
J.Mol.Biol., 401, 2010
5DKZ
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BU of 5dkz by Molmil
Crystal structure of glucosidase II alpha subunit (alpha3-Glc2-bound from)
Descriptor: Alpha glucosidase-like protein, alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose
Authors:Satoh, T, Toshimori, T, Yan, G, Yamaguchi, T, Kato, K.
Deposit date:2015-09-04
Release date:2016-01-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control.
Sci Rep, 6, 2016
5DKX
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BU of 5dkx by Molmil
Crystal structure of glucosidase II alpha subunit (Tris-bound from)
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha glucosidase-like protein, CHLORIDE ION
Authors:Satoh, T, Toshimori, T, Yan, G, Yamaguchi, T, Kato, K.
Deposit date:2015-09-04
Release date:2016-01-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control.
Sci Rep, 6, 2016
5DL0
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BU of 5dl0 by Molmil
Crystal structure of glucosidase II alpha subunit (Glc1Man2-bound from)
Descriptor: Alpha glucosidase-like protein, alpha-D-glucopyranose-(1-3)-alpha-D-mannopyranose
Authors:Satoh, T, Toshimori, T, Yan, G, Yamaguchi, T, Kato, K.
Deposit date:2015-09-04
Release date:2016-01-27
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control.
Sci Rep, 6, 2016
5DKY
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BU of 5dky by Molmil
Crystal structure of glucosidase II alpha subunit (DNJ-bound from)
Descriptor: 1-DEOXYNOJIRIMYCIN, Alpha glucosidase-like protein
Authors:Satoh, T, Toshimori, T, Yan, G, Yamaguchi, T, Kato, K.
Deposit date:2015-09-04
Release date:2016-01-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for two-step glucose trimming by glucosidase II involved in ER glycoprotein quality control.
Sci Rep, 6, 2016
5Y7F
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BU of 5y7f by Molmil
Crystal structure of catalytic domain of UGGT (UDP-bound form) from Thermomyces dupontii
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, UGGT, ...
Authors:Satoh, T, Song, C, Zhu, T, Toshimori, T, Murata, K, Hayashi, Y, Kamikubo, H, Uchihashi, T, Kato, K.
Deposit date:2017-08-17
Release date:2017-09-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT.
Sci Rep, 7, 2017
5Y7O
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BU of 5y7o by Molmil
Crystal structure of folding sensor region of UGGT from Thermomyces dupontii
Descriptor: UGGT
Authors:Satoh, T, Song, C, Zhu, T, Toshimori, T, Murata, K, Hayashi, Y, Kamikubo, H, Uchihashi, T, Kato, K.
Deposit date:2017-08-17
Release date:2017-09-27
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT.
Sci Rep, 7, 2017
3LIN
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BU of 3lin by Molmil
crystal structure of HTLV protease complexed with the inhibitor, KNI-10562
Descriptor: N-[(2S,3S)-4-{(4R)-4-[(2,2-dimethylpropyl)carbamoyl]-5,5-dimethyl-1,3-thiazolidin-3-yl}-3-hydroxy-4-oxo-1-phenylbutan-2-yl]-N~2~-{(2S)-2-[(methoxycarbonyl)amino]-2-phenylacetyl}-3-methyl-L-valinamide, Protease
Authors:Satoh, T, Li, M, Nguyen, J, Kiso, Y, Wlodawer, A, Gustchina, A.
Deposit date:2010-01-25
Release date:2010-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Crystal structures of inhibitor complexes of human T-cell leukemia virus (HTLV-1) protease.
J.Mol.Biol., 401, 2010
3LIQ
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BU of 3liq by Molmil
Crystal Structure of HTLV protease complexed with the inhibitor, KNI-10673
Descriptor: (4R)-3-[(2S,3S)-3-[[(2S)-2-[[(2S)-2-azanyl-2-phenyl-ethanoyl]amino]-3,3-dimethyl-butanoyl]amino]-2-hydroxy-4-phenyl-but anoyl]-5,5-dimethyl-N-(2-methylpropyl)-1,3-thiazolidine-4-carboxamide, Protease
Authors:Satoh, T, Li, M, Nguyen, J, Kiso, Y, Wlodawer, A, Gustchina, A.
Deposit date:2010-01-25
Release date:2010-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Crystal structures of inhibitor complexes of human T-cell leukemia virus (HTLV-1) protease.
J.Mol.Biol., 401, 2010
3LIY
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BU of 3liy by Molmil
crystal structure of HTLV protease complexed with Statine-containing peptide inhibitor
Descriptor: DI(HYDROXYETHYL)ETHER, Protease, statine-containing inhibitor
Authors:Satoh, T, Li, M, Nguyen, J, Kiso, Y, Wlodawer, A, Gustchina, A.
Deposit date:2010-01-25
Release date:2010-07-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal structures of inhibitor complexes of human T-cell leukemia virus (HTLV-1) protease.
J.Mol.Biol., 401, 2010
3LIX
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BU of 3lix by Molmil
crystal structure of htlv protease complexed with the inhibitor KNI-10729
Descriptor: N-{(1S,2S)-1-benzyl-3-[(4R)-5,5-dimethyl-4-{[(1R)-1,2,2-trimethylpropyl]carbamoyl}-1,3-thiazolidin-3-yl]-2-hydroxy-3-oxopropyl}-3-methyl-N~2~-{(2S)-2-[(morpholin-4-ylacetyl)amino]-2-phenylacetyl}-L-valinamide, Protease, ZINC ION
Authors:Satoh, T, Li, M, Nguyen, J, Kiso, Y, Wlodawer, A, Gustchina, A.
Deposit date:2010-01-25
Release date:2010-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structures of inhibitor complexes of human T-cell leukemia virus (HTLV-1) protease.
J.Mol.Biol., 401, 2010
6JPT
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BU of 6jpt by Molmil
Crystal structure of human PAC3 homodimer (trigonal form)
Descriptor: POTASSIUM ION, Proteasome assembly chaperone 3, THIOCYANATE ION
Authors:Satoh, T, Yagi-Utsumi, M, Okamoto, K, Kurimoto, E, Tanaka, K, Kato, K.
Deposit date:2019-03-27
Release date:2019-05-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (0.96 Å)
Cite:Molecular and Structural Basis of the Proteasome alpha Subunit Assembly Mechanism Mediated by the Proteasome-Assembling Chaperone PAC3-PAC4 Heterodimer.
Int J Mol Sci, 20, 2019
3WHJ
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BU of 3whj by Molmil
Crystal structure of Nas2 N-terminal domain
Descriptor: CADMIUM ION, Probable 26S proteasome regulatory subunit p27, SULFATE ION
Authors:Satoh, T, Saeki, Y, Hiromoto, T, Wang, Y.-H, Uekusa, Y, Yagi, H, Yoshihara, H, Yagi-Utsumi, M, Mizushima, T, Tanaka, K, Kato, K.
Deposit date:2013-08-26
Release date:2014-03-26
Last modified:2022-08-24
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis for proteasome formation controlled by an assembly chaperone nas2.
Structure, 22, 2014
3WHK
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BU of 3whk by Molmil
Crystal structure of PAN-Rpt5C chimera
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Proteasome-activating nucleotidase, 26S protease regulatory subunit 6A
Authors:Satoh, T, Saeki, Y, Hiromoto, T, Wang, Y.-H, Uekusa, Y, Yagi, H, Yoshihara, H, Yagi-Utsumi, M, Mizushima, T, Tanaka, K, Kato, K.
Deposit date:2013-08-26
Release date:2014-03-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for proteasome formation controlled by an assembly chaperone nas2.
Structure, 22, 2014
3WHL
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BU of 3whl by Molmil
Crystal structure of Nas2 N-terminal domain complexed with PAN-Rpt5C chimera
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Probable 26S proteasome regulatory subunit p27, Proteasome-activating nucleotidase, ...
Authors:Satoh, T, Saeki, Y, Hiromoto, T, Wang, Y.-H, Uekusa, Y, Yagi, H, Yoshihara, H, Yagi-Utsumi, M, Mizushima, T, Tanaka, K, Kato, K.
Deposit date:2013-08-26
Release date:2014-03-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (4 Å)
Cite:Structural basis for proteasome formation controlled by an assembly chaperone nas2.
Structure, 22, 2014
3WNX
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BU of 3wnx by Molmil
Crystal structure of ERGIC-53/MCFD2, Calcium/Man3-bound form
Descriptor: CALCIUM ION, Multiple coagulation factor deficiency protein 2, Protein ERGIC-53, ...
Authors:Satoh, T, Suzuki, K, Yamaguchi, T, Kato, K.
Deposit date:2013-12-18
Release date:2014-01-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural Basis for Disparate Sugar-Binding Specificities in the Homologous Cargo Receptors ERGIC-53 and VIP36
Plos One, 9, 2014
3WHU
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BU of 3whu by Molmil
Crystal structure of ERGIC-53/MCFD2, Calcium/Man2-bound form
Descriptor: CALCIUM ION, GLYCEROL, Multiple coagulation factor deficiency protein 2, ...
Authors:Satoh, T, Suzuki, K, Kato, K.
Deposit date:2013-08-30
Release date:2014-01-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Basis for Disparate Sugar-Binding Specificities in the Homologous Cargo Receptors ERGIC-53 and VIP36
Plos One, 9, 2014
3WHT
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BU of 3wht by Molmil
Crystal structure of ERGIC-53/MCFD2, Calcium-free form
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Satoh, T, Suzuki, K, Kato, K.
Deposit date:2013-08-30
Release date:2014-01-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Basis for Disparate Sugar-Binding Specificities in the Homologous Cargo Receptors ERGIC-53 and VIP36
Plos One, 9, 2014

 

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