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7CMG
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BU of 7cmg by Molmil
The Structure of the periplasmic domain of PorM
Descriptor: Por secretion system protein porM/gldM
Authors:Sato, K, Okada, K, Nakayam, K, Imada, K.
Deposit date:2020-07-27
Release date:2020-09-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:PorM, a core component of bacterial type IX secretion system, forms a dimer with a unique kinked-rod shape.
Biochem.Biophys.Res.Commun., 532, 2020
1K36
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BU of 1k36 by Molmil
NMR Structure of human Epiregulin
Descriptor: Epiregulin
Authors:Sato, K, Miura, K, Tada, M, Aizawa, T, Miyamoto, K, Kawano, K.
Deposit date:2001-10-02
Release date:2003-09-30
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of epiregulin and the effect of its C-terminal domain for receptor binding affinity
Febs Lett., 553, 2003
1K37
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BU of 1k37 by Molmil
NMR Structure of human Epiregulin
Descriptor: Epiregulin
Authors:Sato, K, Miura, K, Tada, M, Aizawa, T, Miyamoto, K, Kawano, K.
Deposit date:2001-10-02
Release date:2003-09-30
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of epiregulin and the effect of its C-terminal domain for receptor binding affinity
Febs Lett., 553, 2003
2VMJ
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BU of 2vmj by Molmil
Type 1 Copper-Binding Loop of Nitrite Reductase mutant: 130- CAPEGMVPWHVVSGM-144 to 130-CTPHPFM-136
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE, ZINC ION
Authors:Sato, K, Firbank, S.J, Li, C, Banfield, M.J, Dennison, C.
Deposit date:2008-01-28
Release date:2008-12-23
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The Importance of the Long Type 1 Copper-Binding Loop of Nitrite Reductase for Structure and Function.
Chemistry, 14, 2008
2VN3
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BU of 2vn3 by Molmil
Nitrite Reductase from Alcaligenes xylosoxidans
Descriptor: COPPER (II) ION, DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE, SULFATE ION, ...
Authors:Sato, K, Firbank, S.J, Li, C, Banfield, M.J, Dennison, C.
Deposit date:2008-01-30
Release date:2008-12-23
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The Importance of the Long Type 1 Copper-Binding Loop of Nitrite Reductase for Structure and Function.
Chemistry, 14, 2008
7E8D
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BU of 7e8d by Molmil
NSD2 E1099K mutant bound to nucleosome
Descriptor: DNA (185-MER), Histone H2A type 1, Histone H2B type 1-J, ...
Authors:Sengoku, T, Sato, K, Nishizawa, T, Nureki, O, Ogata, K.
Deposit date:2021-03-01
Release date:2021-11-10
Last modified:2022-02-02
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structural basis of the regulation of the normal and oncogenic methylation of nucleosomal histone H3 Lys36 by NSD2.
Nat Commun, 12, 2021
5Y1A
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BU of 5y1a by Molmil
HBP35 of Porphyromonas gingivalis
Descriptor: 35 kDa hemin binding protein
Authors:Kakuda, S, Suzuki, M, Sato, K.
Deposit date:2017-07-20
Release date:2018-07-25
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Immunoglobulin-like domains of the cargo proteins are essential for protein stability during secretion by the type IX secretion system.
Mol. Microbiol., 110, 2018
1A13
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BU of 1a13 by Molmil
G PROTEIN-BOUND CONFORMATION OF MASTOPARAN-X, NMR, 14 STRUCTURES
Descriptor: MASTOPARAN-X
Authors:Kusunoki, H, Wakamatsu, K, Sato, K, Miyazawa, T, Kohno, T.
Deposit date:1997-12-20
Release date:1999-01-13
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:G protein-bound conformation of mastoparan-X: heteronuclear multidimensional transferred nuclear overhauser effect analysis of peptide uniformly enriched with 13C and 15N.
Biochemistry, 37, 1998
4Z5T
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BU of 4z5t by Molmil
The nucleosome containing human H3.5
Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Urahama, T, Harada, A, Maehara, K, Horikoshi, N, Sato, K, Sato, Y, Shiraishi, K, Sugino, N, Osakabe, A, Tachiwana, H, Kagawa, W, Kimura, H, Ohkawa, Y, Kurumizaka, H.
Deposit date:2015-04-03
Release date:2016-02-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Histone H3.5 forms an unstable nucleosome and accumulates around transcription start sites in human testis.
Epigenetics Chromatin, 9, 2016
1D6Q
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BU of 1d6q by Molmil
HUMAN LYSOZYME E102 MUTANT LABELLED WITH 2',3'-EPOXYPROPYL GLYCOSIDE OF N-ACETYLLACTOSAMINE
Descriptor: GLYCEROL, LYSOZYME, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Muraki, M, Harata, K, Sugita, N, Sato, K.
Deposit date:1999-10-15
Release date:2000-01-21
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Protein-carbohydrate interactions in human lysozyme probed by combining site-directed mutagenesis and affinity labeling.
Biochemistry, 39, 2000
1D6P
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BU of 1d6p by Molmil
HUMAN LYSOZYME L63 MUTANT LABELLED WITH 2',3'-EPOXYPROPYL N,N'-DIACETYLCHITOBIOSE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, LYSOZYME
Authors:Muraki, M, Harata, K, Sugita, N, Sato, K.
Deposit date:1999-10-15
Release date:2000-01-21
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Protein-carbohydrate interactions in human lysozyme probed by combining site-directed mutagenesis and affinity labeling.
Biochemistry, 39, 2000
1REY
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BU of 1rey by Molmil
HUMAN LYSOZYME-N,N'-DIACETYLCHITOBIOSE COMPLEX
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, LYSOZYME
Authors:Muraki, M, Harata, K, Sugita, N, Sato, K.
Deposit date:1996-08-21
Release date:1997-02-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Origin of carbohydrate recognition specificity of human lysozyme revealed by affinity labeling.
Biochemistry, 35, 1996
1REZ
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BU of 1rez by Molmil
HUMAN LYSOZYME-N-ACETYLLACTOSAMINE COMPLEX
Descriptor: GLYCEROL, LYSOZYME, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Muraki, M, Harata, K, Sugita, N, Sato, K.
Deposit date:1996-08-21
Release date:1997-02-12
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Origin of carbohydrate recognition specificity of human lysozyme revealed by affinity labeling.
Biochemistry, 35, 1996
1OMG
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BU of 1omg by Molmil
NMR STUDY OF OMEGA-CONOTOXIN MVIIA
Descriptor: OMEGA-CONOTOXIN MVIIA
Authors:Kohno, T, Kim, J.-I, Kobayashi, K, Kodera, Y, Maeda, T, Sato, K.
Deposit date:1995-04-26
Release date:1996-04-03
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Three-dimensional structure in solution of the calcium channel blocker omega-conotoxin MVIIA.
Biochemistry, 34, 1995
1QCM
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BU of 1qcm by Molmil
AMYLOID BETA PEPTIDE (25-35), NMR, 20 STRUCTURES
Descriptor: AMYLOID BETA PEPTIDE
Authors:Kohno, T, Kobayashi, K, Maeda, T, Sato, K, Takashima, A.
Deposit date:1996-07-19
Release date:1997-07-07
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Three-dimensional structures of the amyloid beta peptide (25-35) in membrane-mimicking environment.
Biochemistry, 35, 1996
1RE2
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BU of 1re2 by Molmil
HUMAN LYSOZYME LABELLED WITH TWO 2',3'-EPOXYPROPYL BETA-GLYCOSIDE OF N-ACETYLLACTOSAMINE
Descriptor: GLYCEROL, PROTEIN (LYSOZYME), beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Muraki, M, Harata, K, Sugita, N, Sato, K.
Deposit date:1998-11-05
Release date:1999-05-05
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Dual affinity labeling of the active site of human lysozyme with an N-acetyllactosamine derivative: first ligand assisted recognition of the second ligand.
Biochemistry, 38, 1999
1REM
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BU of 1rem by Molmil
HUMAN LYSOZYME WITH MAN-B1,4-GLCNAC COVALENTLY ATTACHED TO ASP53
Descriptor: LYSOZYME, NITRATE ION, R-1,2-PROPANEDIOL, ...
Authors:Muraki, M, Harata, K, Sugita, N, Sato, K.
Deposit date:1998-01-14
Release date:1998-07-15
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-ray structure of human lysozyme labelled with 2',3'-epoxypropyl beta-glycoside of man-beta1,4-GlcNAc. Structural change and recognition specificity at subsite B.
Acta Crystallogr.,Sect.D, 54, 1998
1NC8
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BU of 1nc8 by Molmil
HIGH-RESOLUTION SOLUTION NMR STRUCTURE OF THE MINIMAL ACTIVE DOMAIN OF THE HUMAN IMMUNODEFICIENCY VIRUS TYPE-2 NUCLEOCAPSID PROTEIN, 15 STRUCTURES
Descriptor: NUCLEOCAPSID PROTEIN, ZINC ION
Authors:Kodera, Y, Sato, K, Tsukahara, T, Komatsu, H, Maeda, T, Kohno, T.
Deposit date:1998-05-14
Release date:1999-05-25
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:High-resolution solution NMR structure of the minimal active domain of the human immunodeficiency virus type-2 nucleocapsid protein.
Biochemistry, 37, 1998
1OAV
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BU of 1oav by Molmil
OMEGA-AGATOXIN IVA
Descriptor: OMEGA-AGATOXIN IVA
Authors:Kim, J.I, Konishi, S, Iwai, H, Kohno, T, Gouda, H, Shimada, I, Sato, K, Arata, Y.
Deposit date:1995-06-28
Release date:1995-10-15
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the calcium channel antagonist omega-agatoxin IVA: consensus molecular folding of calcium channel blockers.
J.Mol.Biol., 250, 1995
1OAW
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BU of 1oaw by Molmil
OMEGA-AGATOXIN IVA
Descriptor: OMEGA-AGATOXIN IVA
Authors:Kim, J.I, Konishi, S, Iwai, H, Kohno, T, Gouda, H, Shimada, I, Sato, K, Arata, Y.
Deposit date:1995-06-28
Release date:1995-10-15
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the calcium channel antagonist omega-agatoxin IVA: consensus molecular folding of calcium channel blockers.
J.Mol.Biol., 250, 1995
1F3K
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BU of 1f3k by Molmil
THREE-DIMENSIONAL SOLUTION STRUCTURE OF OMEGA-CONOTOXIN TXVII, AN L-TYPE CALCIUM CHANNEL BLOCKER
Descriptor: OMEGA-CONOTOXIN TXVII
Authors:Kobayashi, K, Sasaki, T, Sato, K, Kohno, T.
Deposit date:2000-06-05
Release date:2000-12-13
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of omega-conotoxin TxVII, an L-type calcium channel blocker.
Biochemistry, 39, 2000
8GUI
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BU of 8gui by Molmil
Bre1-nucleosome complex (Model I)
Descriptor: DNA (147-mer), E3 ubiquitin-protein ligase BRE1A, E3 ubiquitin-protein ligase BRE1B, ...
Authors:Onishi, S, Hamada, K, Sato, K, Nishizawa, T, Nureki, O, Ogata, K, Sengoku, T.
Deposit date:2022-09-12
Release date:2023-09-20
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Structure of the human Bre1 complex bound to the nucleosome
To Be Published
8GUJ
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BU of 8guj by Molmil
Bre1-nucleosome complex (Model II)
Descriptor: DNA (147-mer), E3 ubiquitin-protein ligase BRE1A, E3 ubiquitin-protein ligase BRE1B, ...
Authors:Onishi, S, Sato, K, Hamada, K, Nishizawa, T, Nureki, O, Ogata, K, Sengoku, T.
Deposit date:2022-09-12
Release date:2023-09-20
Last modified:2024-02-07
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Structure of the human Bre1 complex bound to the nucleosome
To Be Published
1FU3
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BU of 1fu3 by Molmil
THREE-DIMENSIONAL STRUCTURE IN SOLUTION OF THE SODIUM CHANNEL AGONIST/ANTAGONIST DELTA-CONOTOXIN TXVIA
Descriptor: DELTA-CONOTOXIN TXVIA
Authors:Kohno, T, Sasaki, T, Fainzilber, M, Sato, K.
Deposit date:2000-09-14
Release date:2002-09-20
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the sodium channel agonist/antagonist delta-conotoxin TxVIA.
J.Biol.Chem., 277, 2002
5AY8
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BU of 5ay8 by Molmil
Crystal structure of human nucleosome containing H3.Y
Descriptor: CHLORIDE ION, DNA (146-MER), H3.Y, ...
Authors:Kujirai, T, Horikoshi, N, Sato, K, Maehara, K, Machida, S, Osakabe, A, Kimura, H, Ohkawa, Y, Kurumizaka, H.
Deposit date:2015-08-10
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure and function of human histone H3.Y nucleosome
Nucleic Acids Res., 44, 2016

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