Author results

1Y43
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CRYSTAL STRUCTURE OF ASPERGILLOGLUTAMIC PEPTIDASE FROM ASPERGILLUS NIGER
Descriptor:Aspergillopepsin II light chain, Aspergillopepsin II heavy chain, SULFATE ION
Authors:Sasaki, H., Nakagawa, A., Iwata, S., Muramatsu, T., Suganuma, M., Sawano, Y., Kojima, M., Kubota, K., Takahashi, K.
Deposit date:2004-11-30
Release date:2005-12-13
Last modified:2013-02-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The three-dimensional structure of aspergilloglutamic peptidase from Aspergillus niger
Proc.Jpn.Acad.,Ser.B, 80, 2004
3TRS
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THE CRYSTAL STRUCTURE OF ASPERGILLOGLUTAMIC PEPTIDASE FROM ASPERGILLUS NIGER
Descriptor:Aspergillopepsin-2 light chain, Aspergillopepsin-2 heavy chain, DIMETHYL SULFOXIDE
Authors:Sasaki, H., Kubota, K., Lee, W.C., Ohtsuka, J., Kojima, M., Takahashi, K., Tanokura, M.
Deposit date:2011-09-10
Release date:2012-08-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The crystal structure of an intermediate dimer of aspergilloglutamic peptidase that mimics the enzyme-activation product complex produced upon autoproteolysis.
J.Biochem., 152, 2012
1VFR
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THE MAJOR NAD(P)H:FMN OXIDOREDUCTASE FROM VIBRIO FISCHERI
Descriptor:NAD(P)H\:FMN OXIDOREDUCTASE, FLAVIN MONONUCLEOTIDE
Authors:Koike, H., Sasaki, H., Kobori, T., Zenno, S., Saigo, K., Murphy, M.E.P., Adman, E.T., Tanokura, M.
Deposit date:1998-01-09
Release date:1999-02-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:1.8 A crystal structure of the major NAD(P)H:FMN oxidoreductase of a bioluminescent bacterium, Vibrio fischeri: overall structure, cofactor and substrate-analog binding, and comparison with related flavoproteins.
J.Mol.Biol., 280, 1998
2W49
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ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE
Descriptor:TROPONIN C, SKELETAL MUSCLE, TROPONIN T, ...
Authors:Wu, S., Liu, J., Reedy, M.C., Tregear, R.T., Winkler, H., Franzini-Armstrong, C., Sasaki, H., Lucaveche, C., Goldman, Y.E., Reedy, M.K., Taylor, K.A.
Deposit date:2008-11-24
Release date:2010-05-05
Last modified:2017-08-23
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Electron Tomography of Cryofixed, Isometrically Contracting Insect Flight Muscle Reveals Novel Actin-Myosin Interactions
Plos One, 5, 2010
2W4A
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ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE
Descriptor:MYOSIN REGULATORY LIGHT CHAIN 2, SKELETAL MUSCLE ISOFORM, MYOSIN LIGHT CHAIN 3, ...
Authors:Wu, S., Liu, J., Reedy, M.C., Tregear, R.T., Winkler, H., Franzini-Armstrong, C., Sasaki, H., Lucaveche, C., Goldman, Y.E., Reedy, M.K., Taylor, K.A.
Deposit date:2008-11-24
Release date:2010-04-14
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Electron Tomography of Cryofixed, Isometrically Contracting Insect Flight Muscle Reveals Novel Actin-Myosin Interactions
Plos One, 5, 2010
2W4G
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ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE QUICK FROZEN AFTER A QUICK STRETCH STEP
Descriptor:MYOSIN REGULATORY LIGHT CHAIN 2, SKELETAL MUSCLE ISOFORM, MYOSIN LIGHT CHAIN 3, ...
Authors:Wu, S., Liu, J., Reedy, M.C., Tregear, R.T., Winkler, H., Franzini-Armstrong, C., Sasaki, H., Lucaveche, C., Goldman, Y.E., Reedy, M.K., Taylor, K.A.
Deposit date:2008-11-25
Release date:2010-08-25
Last modified:2017-04-19
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Electron Tomography of Cryofixed, Isometrically Contracting Insect Flight Muscle Reveals Novel Actin-Myosin Interactions
Plos One, 5, 2010
2W4H
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ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE QUICK FROZEN AFTER A QUICK RELEASE STEP
Descriptor:MYOSIN REGULATORY LIGHT CHAIN 2, SKELETAL MUSCLE ISOFORM, MYOSIN LIGHT CHAIN 3, ...
Authors:Wu, S., Liu, J., Reedy, M.C., Tregear, R.T., Winkler, H., Franzini-Armstrong, C., Sasaki, H., Lucaveche, C., Goldman, Y.E., Reedy, M.K., Taylor, K.A.
Deposit date:2008-11-25
Release date:2010-08-25
Last modified:2017-04-19
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Structural Changes in Isometrically Contracting Insect Flight Muscle Trapped Following a Mechanical Perturbation.
Plos One, 7, 2012
2W4T
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ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE
Descriptor:MYOSIN HEAVY CHAIN, STRIATED MUSCLE, MYOSIN REGULATORY LIGHT CHAIN, ...
Authors:Wu, S., Liu, J., Reedy, M.C., Tregear, R.T., Winkler, H., Franzini-Armstrong, C., Sasaki, H., Lucaveche, C., Goldman, Y.E., Reedy, M.K., Taylor, K.A.
Deposit date:2008-12-02
Release date:2010-01-19
Last modified:2011-07-13
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Electron Tomography of Cryofixed, Isometrically Contracting Insect Flight Muscle Reveals Novel Actin-Myosin Interactions
Plos One, 5, 2010
2W4U
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ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE QUICK FROZEN AFTER A LENGTH STEP
Descriptor:TROPONIN C, SKELETAL MUSCLE, TROPONIN T, ...
Authors:Wu, S., Liu, J., Reedy, M.C., Tregear, R.T., Winkler, H., Franzini-Armstrong, C., Sasaki, H., Lucaveche, C., Goldman, Y.E., Reedy, M.K., Taylor, K.A.
Deposit date:2008-12-02
Release date:2010-08-25
Last modified:2017-04-19
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Structural Changes in Isometrically Contracting Insect Flight Muscle Trapped Following a Mechanical Perturbation.
Plos One, 7, 2012
2W4V
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ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE QUICK FROZEN AFTER A QUICK RELEASE STEP
Descriptor:MYOSIN HEAVY CHAIN, STRIATED MUSCLE, MYOSIN REGULATORY LIGHT CHAIN, ...
Authors:Wu, S., Liu, J., Reedy, M.C., Tregear, R.T., Winkler, H., Franzini-Armstrong, C., Sasaki, H., Lucaveche, C., Goldman, Y.E., Reedy, M.K., Taylor, K.A.
Deposit date:2008-12-02
Release date:2010-09-15
Last modified:2017-04-19
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Structural Changes in Isometrically Contracting Insect Flight Muscle Trapped Following a Mechanical Perturbation.
Plos One, 7, 2012
2W4W
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ISOMETRICALLY CONTRACTING INSECT ASYNCHRONOUS FLIGHT MUSCLE QUICK FROZEN AFTER A QUICK STRETCH STEP
Descriptor:MYOSIN HEAVY CHAIN, STRIATED MUSCLE, MYOSIN REGULATORY LIGHT CHAIN, ...
Authors:Wu, S., Liu, J., Reedy, M.C., Tregear, R.T., Winkler, H., Franzini-Armstrong, C., Sasaki, H., Lucaveche, C., Goldman, Y.E., Reedy, M.K., Taylor, K.A.
Deposit date:2008-12-02
Release date:2010-08-25
Last modified:2017-04-19
Method:ELECTRON MICROSCOPY (35 Å)
Cite:Structural Changes in Isometrically Contracting Insect Flight Muscle Trapped Following a Mechanical Perturbation.
Plos One, 7, 2012
1V5Y
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BINDING OF COUMARINS TO NAD(P)H:FMN OXIDOREDUCTASE
Descriptor:Major NAD(P)H-flavin oxidoreductase, FLAVIN MONONUCLEOTIDE, 4-HYDROXY-2H-CHROMEN-2-ONE
Authors:Kobori, T., Koike, H., Sasaki, H., Zenno, S., Saigo, K., Tanokura, M.
Deposit date:2003-11-26
Release date:2005-03-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Binding of coumarins to NAD(P)H:FMN oxidoreductase
To be Published
1V5Z
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BINDING OF COUMARINS TO NAD(P)H:FMN OXIDOREDUCTASE
Descriptor:Major NAD(P)H-flavin oxidoreductase, FLAVIN MONONUCLEOTIDE, (2E)-3-(2-HYDROXYPHENYL)ACRYLIC ACID
Authors:Kobori, T., Koike, H., Sasaki, H., Zenno, S., Saigo, K., Tanokura, M.
Deposit date:2003-11-26
Release date:2005-03-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Binding of coumarins to NAD(P)H:FMN oxidoreductase
To be Published
5ZE9
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CRYSTAL STRUCTURE OF AMP-PNP BOUND MUTANT A3B3 COMPLEX FROM ENTEROCOCCUS HIRAE V-ATPASE
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Maruyama, S., Suzuki, K., Sasaki, H., Mizutani, K., Saito, Y., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Ichiro, Y., Murata, T.
Deposit date:2018-02-27
Release date:2019-02-06
Last modified:2019-02-20
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Metastable asymmetrical structure of a shaftless V1motor.
Sci Adv, 5, 2019
1F5V
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STRUCTURE AND SITE-DIRECTED MUTAGENESIS OF A FLAVOPROTEIN FROM ESCHERICHIA COLI THAT REDUCES NITROCOMPOUNDS. ALTERATION OF PYRIDINE NUCLEOTIDE BINDING BY A SINGLE AMINO ACID SUBSTITUTION
Descriptor:OXYGEN-INSENSITIVE NADPH NITROREDUCTASE, FLAVIN MONONUCLEOTIDE
Authors:Kobori, T., Sasaki, H., Lee, W.C., Zenno, S., Saigo, K., Murphy, M.E.P., Tanokura, M.
Deposit date:2000-06-17
Release date:2001-02-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and site-directed mutagenesis of a flavoprotein from Escherichia coli that reduces nitrocompounds: alteration of pyridine nucleotide binding by a single amino acid substitution.
J.Biol.Chem., 276, 2001
1IJ5
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METAL-FREE STRUCTURE OF MULTIDOMAIN EF-HAND PROTEIN, CBP40, FROM TRUE SLIME MOLD
Descriptor:PLASMODIAL SPECIFIC LAV1-2 PROTEIN
Authors:Iwasaki, W., Sasaki, H., Nakamura, A., Kohama, K., Tanokura, M.
Deposit date:2001-04-25
Release date:2003-02-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Metal-Free and Ca(2+)-Bound Structures of a Multidomain EF-Hand Protein, CBP40, from the Lower Eukaryote Physarum polycephalum
Structure, 11, 2003
1IJ6
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CA2+-BOUND STRUCTURE OF MULTIDOMAIN EF-HAND PROTEIN, CBP40, FROM TRUE SLIME MOLD
Descriptor:PLASMODIAL SPECIFIC LAV1-2 PROTEIN, CALCIUM ION
Authors:Iwasaki, W., Sasaki, H., Nakamura, A., Kohama, K., Tanokura, M.
Deposit date:2001-04-25
Release date:2003-02-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Metal-Free and Ca(2+)-Bound Structures of a Multidomain EF-Hand Protein, CBP40, from the Lower Eukaryote Physarum polycephalum
Structure, 11, 2003
1ZOV
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CRYSTAL STRUCTURE OF MONOMERIC SARCOSINE OXIDASE FROM BACILLUS SP. NS-129
Descriptor:Monomeric sarcosine oxidase, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Nagata, K., Sasaki, H., Ohtsuka, J., Hua, M., Okai, M., Kubota, K., Kamo, M., Ito, K., Ichikawa, T., Koyama, Y., Tanokura, M.
Deposit date:2005-05-14
Release date:2006-05-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Crystal structure of monomeric sarcosine oxidase from Bacillus sp. NS-129 reveals multiple conformations at the active-site loop
PROC.JPN.ACAD.,SER.B, 81, 2005
4HE7
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CRYSTAL STRUCTURE OF BRAZZEIN
Descriptor:Defensin-like protein, SODIUM ION
Authors:Nagata, K., Hongo, N., Kameda, Y., Yamamura, A., Sasaki, H., Lee, W.C., Ishikawa, K., Suzuki, E., Tanokura, M.
Deposit date:2012-10-03
Release date:2013-03-27
Last modified:2018-07-18
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of brazzein, a sweet-tasting protein from the wild African plant Pentadiplandra brazzeana
Acta Crystallogr.,Sect.D, 69, 2013
2CXI
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CRYSTAL STRUCTURE OF AN N-TERMINAL FRAGMENT OF THE PHENYLALANYL-TRNA SYNTHETASE BETA-SUBUNIT FROM PYROCOCCUS HORIKOSHII
Descriptor:Phenylalanyl-tRNA synthetase beta chain
Authors:Sasaki, H., Sekine, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-06-29
Release date:2006-09-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural and mutational studies of the amino acid-editing domain from archaeal/eukaryal phenylalanyl-tRNA synthetase
Proc.Natl.Acad.Sci.Usa, 103, 2006
4GZN
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MOUSE ZFP57 ZINC FINGERS IN COMPLEX WITH METHYLATED DNA
Descriptor:DNA (5'-D(*TP*AP*TP*TP*GP*CP*(5CM)P*GP*CP*AP*G)-3'), DNA (5'-D(*AP*CP*TP*GP*(5CM)P*GP*GP*CP*AP*AP*T)-3'), Zinc finger protein 57, ...
Authors:Liu, Y., Zhang, X., Cheng, X.
Deposit date:2012-09-06
Release date:2012-10-17
Last modified:2012-11-21
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence.
Genes Dev., 26, 2012
5ZEA
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CRYSTAL STRUCTURE OF THE NUCLEOTIDE-FREE MUTANT A3B3
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, GLYCEROL
Authors:Maruyama, S., Suzuki, K., Mizutani, K., Saito, Y., Imai, F.L., Ishizuka-Katsura, Y., Shirouzu, M., Ichiro, Y., Murata, T.
Deposit date:2018-02-27
Release date:2019-02-06
Last modified:2019-02-20
Method:X-RAY DIFFRACTION (3.384 Å)
Cite:Metastable asymmetrical structure of a shaftless V1motor.
Sci Adv, 5, 2019
1NTD
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STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE MUTANT M150E THAT CONTAINS ZINC
Descriptor:NITRITE REDUCTASE, COPPER (II) ION
Authors:Murphy, M.E.P., Adman, E.T., Turley, S.
Deposit date:1995-07-03
Release date:1996-11-08
Last modified:2018-03-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of Alcaligenes faecalis nitrite reductase and a copper site mutant, M150E, that contains zinc.
Biochemistry, 34, 1995
1V4B
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THE CRYSTAL STRUCTURE OF AZOR (AZO REDUCTASE) FROM ESCHERICHIA COLI: OXIDIZED FORM
Descriptor:NADH-azoreductase, FMN-dependent, FLAVIN MONONUCLEOTIDE, ...
Authors:Ito, K., Tanokura, M.
Deposit date:2003-11-12
Release date:2005-01-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Three-dimensional structure of AzoR from Escherichia coli. An oxidereductase conserved in microorganisms
J.Biol.Chem., 281, 2006
2AFN
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STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE AND A COPPER SITE MUTANT, M150E, THAT CONTAINS ZINC
Descriptor:NITRITE REDUCTASE, COPPER (II) ION
Authors:Murphy, M.E.P., Adman, E.T., Turley, S.
Deposit date:1995-07-03
Release date:1996-08-01
Last modified:2018-03-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Alcaligenes faecalis nitrite reductase and a copper site mutant, M150E, that contains zinc.
Biochemistry, 34, 1995
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