Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2Y8C
DownloadVisualize
BU of 2y8c by Molmil
Plasmodium falciparum dUTPase in complex with a trityl ligand
Descriptor: (2S)-2-[(2,4-dioxopyrimidin-1-yl)methyl]-N-(2-hydroxyethyl)-4-trityloxy-butanamide, DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE, SULFATE ION
Authors:Baragana, B, McCarthy, O, Sanchez, P, Bosch, C, Kaiser, M, Brun, R, Whittingham, J.L, Roberts, S, Zhou, X.-X, Wilson, K.S, Johansson, N.G, Gonzalez-Pacanowska, D, Gilbert, I.H.
Deposit date:2011-02-04
Release date:2012-03-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Beta-Branched Acyclic Nucleoside Analogues as Inhibitors of Plasmodium Falciparum Dutpase
Bioorg.Med.Chem., 19, 2011
8SPK
DownloadVisualize
BU of 8spk by Molmil
Crystal structure of Antarctic PET-degrading enzyme
Descriptor: Lipase 1, MALONATE ION
Authors:Furtado, A.A, Blazquez-Sanchez, P, Grinen, A, Vargas, J.A, Leonardo, D.A, Sculaccio, S.A, Pereira, H.M, Diez, B, Garratt, R.C, Ramirez-Sarmiento, C.A.
Deposit date:2023-05-03
Release date:2023-08-23
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Engineering the catalytic activity of an Antarctic PET-degrading enzyme by loop exchange.
Protein Sci., 32, 2023
8F4X
DownloadVisualize
BU of 8f4x by Molmil
Top-down design of protein architectures with reinforcement learning
Descriptor: RC_I_1-H11
Authors:Borst, A.J, Baker, D.
Deposit date:2022-11-11
Release date:2023-05-10
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Top-down design of protein architectures with reinforcement learning.
Science, 380, 2023
8F53
DownloadVisualize
BU of 8f53 by Molmil
Top-down design of protein architectures with reinforcement learning
Descriptor: RC_I_2
Authors:Borst, A.J, Baker, D.
Deposit date:2022-11-11
Release date:2023-05-10
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Top-down design of protein architectures with reinforcement learning.
Science, 380, 2023
8F54
DownloadVisualize
BU of 8f54 by Molmil
Top-down design of protein architectures with reinforcement learning
Descriptor: RC_I_1
Authors:Borst, A.J, Baker, D.
Deposit date:2022-11-11
Release date:2023-05-10
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Top-down design of protein architectures with reinforcement learning.
Science, 380, 2023
7NEI
DownloadVisualize
BU of 7nei by Molmil
Polyester Hydrolase Leipzig 7 (PHL7) in the unliganded state
Descriptor: Polyester Hydrolase Leipzig 7 (PHL-7), SODIUM ION
Authors:Richter, P.K, Strater, N.
Deposit date:2021-02-04
Release date:2021-06-23
Last modified:2022-11-23
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Low Carbon Footprint Recycling of Post-Consumer PET Plastic with a Metagenomic Polyester Hydrolase.
ChemSusChem, 15, 2022
4MPI
DownloadVisualize
BU of 4mpi by Molmil
Crystal structure of the chitin-binding module (CBM18) of a chitinase-like protein from Hevea brasiliensis
Descriptor: 1,4-DIETHYLENE DIOXIDE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Class I chitinase
Authors:Martinez-Caballero, C.S, Hermoso, J.A, Rodriguez-Romero, A.
Deposit date:2013-09-12
Release date:2014-08-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:Comparative study of two GH19 chitinase-like proteins from Hevea brasiliensis, one exhibiting a novel carbohydrate-binding domain.
Febs J., 281, 2014
4MST
DownloadVisualize
BU of 4mst by Molmil
Crystal Structure of a putative catalytic domain of a chitinase-like protein (HbCLP1) from Hevea brasiliensis
Descriptor: CHLORIDE ION, class I chitinase
Authors:Martinez-Caballero, S, Hermoso, J.A, Rodriguez-Romero, A.
Deposit date:2013-09-18
Release date:2014-08-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.927 Å)
Cite:Comparative study of two GH19 chitinase-like proteins from Hevea brasiliensis, one exhibiting a novel carbohydrate-binding domain.
Febs J., 281, 2014
8BRB
DownloadVisualize
BU of 8brb by Molmil
Polyester Hydrolase Leipzig 7 (PHL7) bound to terephthalic acid (TPA)
Descriptor: DIMETHYL SULFOXIDE, Polyester Hydrolase Leipzig 7 (PHL-7), catalysis-deficient S131A mutant, ...
Authors:Richter, P.K, Strater, N.
Deposit date:2022-11-22
Release date:2023-04-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and function of the metagenomic plastic-degrading polyester hydrolase PHL7 bound to its product.
Nat Commun, 14, 2023
8BRA
DownloadVisualize
BU of 8bra by Molmil
Polyester Hydrolase Leipzig 7 (PHL7) bound to terephthalic acid (TPA) and Mg2+
Descriptor: MAGNESIUM ION, Polyester Hydrolase Leipzig 7 (PHL-7), catalysis-deficient S131A mutant, ...
Authors:Richter, P.K, Strater, N.
Deposit date:2022-11-22
Release date:2023-04-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure and function of the metagenomic plastic-degrading polyester hydrolase PHL7 bound to its product.
Nat Commun, 14, 2023
5VBK
DownloadVisualize
BU of 5vbk by Molmil
Crystal structure of a galactose-binding Lectin from Mytilus californianus
Descriptor: GLYCEROL, Lectin
Authors:Hernandez-Santoyo, A, Garcia-Maldonado, E.
Deposit date:2017-03-29
Release date:2017-06-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.788 Å)
Cite:Molecular and functional characterization of a glycosylated Galactose-Binding lectin from Mytilus californianus.
Fish Shellfish Immunol., 66, 2017
2KY3
DownloadVisualize
BU of 2ky3 by Molmil
Solution structure of GS-alfa-Ktx5.4 synthetic scorpion like
Descriptor: Potassium channel toxin alpha-KTx 5.4
Authors:Del Rio-Portilla, F, Ramirez-Cordero, B.E, Brieba-De Castro, L.
Deposit date:2010-05-14
Release date:2011-06-01
Last modified:2020-02-05
Method:SOLUTION NMR
Cite:Cytotoxicity of recombinant tamapin and related toxin-like peptides on model cell lines.
Chem.Res.Toxicol., 27, 2014
7M1E
DownloadVisualize
BU of 7m1e by Molmil
Structural and functional studies about scorpine showed the presence of blocking channel and cytolytic activities as well as two different structural domains
Descriptor: Scorpine
Authors:del Rio, J.F, Lopez, A.E, Titaux, G.
Deposit date:2021-03-12
Release date:2022-01-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural and functional studies of scorpine: A channel blocker and cytolytic peptide.
Toxicon, 222, 2022
7M1D
DownloadVisualize
BU of 7m1d by Molmil
Structural and functional studies about scorpine showed the presence of blocking channel and cytolytic activities as well as two different structural domains
Descriptor: Scorpine
Authors:del Rio-Portilla, F, Lopez-Giraldo, A.E.
Deposit date:2021-03-12
Release date:2022-01-19
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural and functional studies of scorpine: A channel blocker and cytolytic peptide.
Toxicon, 222, 2022
6AX2
DownloadVisualize
BU of 6ax2 by Molmil
Solution structure of Magi3 a specific insect toxin from the spider Macrothele gigas
Descriptor: Mu-hexatoxin-Mg2a
Authors:del Rio-Portilla, F, Titaux-Delgado, G.A, Escobedo-Gonzalez, F.C.
Deposit date:2017-09-06
Release date:2018-01-10
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Successful refolding and NMR structure of rMagi3: A disulfide-rich insecticidal spider toxin.
Protein Sci., 27, 2018
6BB6
DownloadVisualize
BU of 6bb6 by Molmil
NMR solution structure of Defensin1 from Centruroides limpidus limpidus
Descriptor: Defensin-1
Authors:Escobedo-Gonzalez, F.C, del Rio-Portilla, F, Titaux-Delgado, G.A.
Deposit date:2017-10-16
Release date:2018-09-26
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:From good defence into mortal risk: NMR studyand conversion of a defensin into a neurotoxin
To Be Published
6BAM
DownloadVisualize
BU of 6bam by Molmil
NMR solution structure of Defensin1 from Centruroides limpidus limpidus
Descriptor: Defensin-1
Authors:Escobedo-Gonzalez, F.C, del Rio-Portilla, F, Flores-Solis, D.
Deposit date:2017-10-13
Release date:2018-09-26
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:From good defence into mortal risk: NMR studyand conversion of a defensin into a neurotoxin
To Be Published
6B9W
DownloadVisualize
BU of 6b9w by Molmil
NMR solution structure of Defensin1 from Centruroides limpidus limpidus
Descriptor: Defensin-1
Authors:Escobedo-Gonzalez, F.C, del Rio-Portilla, F, Franco-Bodek, D.
Deposit date:2017-10-11
Release date:2018-09-26
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:From good defence into mortal risk: NMR studyand conversion of a defensin into a neurotoxin
To Be Published
5IPO
DownloadVisualize
BU of 5ipo by Molmil
Solution Structure of Hge36: Scorpine-like Peptide from Hadrurus Gertschi
Descriptor: Hge-scorpine
Authors:Flores-Solis, D, Rodriguez De La Vega, R, del Rio-Portilla, F.
Deposit date:2016-03-09
Release date:2016-06-29
Last modified:2016-08-10
Method:SOLUTION NMR
Cite:Solution structure and antiparasitic activity of scorpine-like peptides from Hoffmannihadrurus gertschi.
Febs Lett., 590, 2016
5JYH
DownloadVisualize
BU of 5jyh by Molmil
Solution Structure of Hge36: Scorpine-like Peptide from Hadrurus Gertschi
Descriptor: Hge-scorpine
Authors:Flores-Solis, D, Rodriguez De La Vega, R, del Rio-Portilla, F.
Deposit date:2016-05-13
Release date:2016-06-29
Last modified:2020-01-15
Method:SOLUTION NMR
Cite:Solution structure and antiparasitic activity of scorpine-like peptides from Hoffmannihadrurus gertschi.
Febs Lett., 590, 2016
6OGX
DownloadVisualize
BU of 6ogx by Molmil
Ternary complex of OX40R (TNFRSF4) bound to Fab1 and Fab2
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Fab 1 Heavy Chain, Fab1 Light Chain, ...
Authors:Ultsch, M.H, Boenig, G, Harris, S.F.
Deposit date:2019-04-03
Release date:2019-07-10
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Tetravalent biepitopic targeting enables intrinsic antibody agonism of tumor necrosis factor receptor superfamily members.
Mabs, 11, 2019
6OKM
DownloadVisualize
BU of 6okm by Molmil
Human OX40R (TNFRSF4) bound to Fab 3C8
Descriptor: Fab 3C8 Heavy Chain, Fab 3C8 light chain, Tumor necrosis factor receptor superfamily member 4
Authors:Boenig, G, Ultsch, M.H, Harris, S.F.
Deposit date:2019-04-14
Release date:2019-08-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Tetravalent biepitopic targeting enables intrinsic antibody agonism of tumor necrosis factor receptor superfamily members.
Mabs, 11, 2019
6OKN
DownloadVisualize
BU of 6okn by Molmil
OX40R (TNFRSF4) bound to Fab 1A7
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Fab 1A7 heavy chain, Fab 1A7 light chain, ...
Authors:Ultsch, M.H, Boenig, G, Harris, S.F.
Deposit date:2019-04-14
Release date:2019-07-10
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Tetravalent biepitopic targeting enables intrinsic antibody agonism of tumor necrosis factor receptor superfamily members.
Mabs, 11, 2019
7PTJ
DownloadVisualize
BU of 7ptj by Molmil
C54S mutant of choline-sulfatase from E. meliloti CECT4857 bound to HEPES
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, Choline sulfatase, ...
Authors:Gavira, J.A, Martinez-Rodriguez, S.
Deposit date:2021-09-27
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural insights into choline-O-sulfatase reveal the molecular determinants for ligand binding.
Acta Crystallogr D Struct Biol, 78, 2022
7PTH
DownloadVisualize
BU of 7pth by Molmil
C54S mutant of choline-sulfatase from E. meliloti CECT4857 bound to choline
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Gavira, J.A, Martinez-Rodriguez, S.
Deposit date:2021-09-27
Release date:2022-08-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural insights into choline-O-sulfatase reveal the molecular determinants for ligand binding.
Acta Crystallogr D Struct Biol, 78, 2022

 

12>

218196

PDB entries from 2024-04-10

PDB statisticsPDBj update infoContact PDBjnumon