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3DE8
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BU of 3de8 by Molmil
Crystal Structure of a Dimeric Cytochrome cb562 Assembly Induced by Copper Coordination
Descriptor: CALCIUM ION, COPPER (II) ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Salgado, E.N, Lewis, R.A, Rheingold, A.L, Tezcan, F.A.
Deposit date:2008-06-08
Release date:2009-04-21
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Control of protein oligomerization symmetry by metal coordination: C2 and C3 symmetrical assemblies through Cu(II) and Ni(II) coordination.
Inorg.Chem., 48, 2009
3DE9
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BU of 3de9 by Molmil
Crystal Structure of a Trimeric Cytochrome cb562 Assembly Induced by Nickel Coordination
Descriptor: NICKEL (II) ION, PROTOPORPHYRIN IX CONTAINING FE, Soluble cytochrome b562
Authors:Salgado, E.N, Lewis, R.A, Rheingold, A.L, Tezcan, F.A.
Deposit date:2008-06-08
Release date:2009-04-21
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Control of protein oligomerization symmetry by metal coordination: C2 and C3 symmetrical assemblies through Cu(II) and Ni(II) coordination.
Inorg.Chem., 48, 2009
3QW0
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BU of 3qw0 by Molmil
Crystal structure of the Zn-RIDC1 complex stabilized by BMB crosslinks
Descriptor: 1,1'-butane-1,4-diylbis(1H-pyrrole-2,5-dione), 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cytochrome cb562, ...
Authors:Salgado, E.N, Tezcan, F.A.
Deposit date:2011-02-26
Release date:2011-06-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Templated construction of a zn-selective protein dimerization motif.
Inorg.Chem., 50, 2011
3QW1
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BU of 3qw1 by Molmil
Crystal structure of the Zn-RIDC1 complex stabilized by BMH crosslinks
Descriptor: 1-methylpyrrolidine-2,5-dione, Cytochrome cb562, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Salgado, E.N, Tezcan, F.A.
Deposit date:2011-02-26
Release date:2011-06-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Templated construction of a zn-selective protein dimerization motif.
Inorg.Chem., 50, 2011
3QVZ
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BU of 3qvz by Molmil
Crystal structure of the Zn-RIDC1 complex stabilized by BMOE crosslinks cocrystallized in the presence of Cu(II)
Descriptor: 1,1'-ethane-1,2-diylbis(1H-pyrrole-2,5-dione), COPPER (II) ION, Cytochrome cb562, ...
Authors:Salgado, E.N, Tezcan, F.A.
Deposit date:2011-02-26
Release date:2011-06-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Templated construction of a zn-selective protein dimerization motif.
Inorg.Chem., 50, 2011
3QVY
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BU of 3qvy by Molmil
Crystal structure of the Zn-RIDC1 complex stabilized by BMOE crosslinks
Descriptor: 1,1'-ethane-1,2-diylbis(1H-pyrrole-2,5-dione), Cytochrome cb562, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Salgado, E.N, Tezcan, F.A.
Deposit date:2011-02-26
Release date:2011-06-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Templated construction of a zn-selective protein dimerization motif.
Inorg.Chem., 50, 2011
3HNI
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BU of 3hni by Molmil
Crystal structure of the Zn-induced tetramer of the engineered cyt cb562 variant RIDC-1
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Soluble cytochrome b562, ZINC ION
Authors:Salgado, E.N, Lewis, R.A, Brodin, J, Tezcan, F.A.
Deposit date:2009-05-31
Release date:2010-02-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Metal templated design of protein interfaces.
Proc.Natl.Acad.Sci.USA, 107, 2010
3HNK
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BU of 3hnk by Molmil
Crystal structure of the dimeric assembly of the cyt cb562 variant RIDC-1
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Soluble cytochrome b562
Authors:Salgado, E.N, Lewis, R.A, Brodin, J, Tezcan, F.A.
Deposit date:2009-05-31
Release date:2010-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Metal templated design of protein interfaces.
Proc.Natl.Acad.Sci.USA, 107, 2010
3HNJ
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BU of 3hnj by Molmil
Crystal structure of the Zn-induced tetramer of the engineered cyt cb562 variant RIDC-2
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Soluble cytochrome b562, ZINC ION
Authors:Salgado, E.N, Lewis, R.A, Brodin, J, Tezcan, F.A.
Deposit date:2009-05-31
Release date:2010-02-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Metal templated design of protein interfaces.
Proc.Natl.Acad.Sci.USA, 107, 2010
3HNL
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BU of 3hnl by Molmil
Crystal structure of the Cu-induced dimer of the engineered cyt cb562 variant RIDC-1
Descriptor: CHLORIDE ION, COPPER (II) ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Salgado, E.N, Lewis, R.A, Brodin, J, Tezcan, F.A.
Deposit date:2009-05-31
Release date:2010-02-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Metal templated design of protein interfaces.
Proc.Natl.Acad.Sci.USA, 107, 2010
2QLA
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BU of 2qla by Molmil
Crystal Structure of a 16-Helix Bundle Architecture Produced by the Zinc-Mediated Self Assembly of Four Cytochrome cb562 Molecules
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Soluble cytochrome b562, ZINC ION
Authors:Tezcan, F.A, Salgado, E.N, Faraone-Mennella, J.
Deposit date:2007-07-12
Release date:2007-11-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Controlling protein-protein interactions through metal coordination: assembly of a 16-helix bundle protein.
J.Am.Chem.Soc., 129, 2007
3C63
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BU of 3c63 by Molmil
Tetrameric Cytochrome cb562 (K34/H59/D62/H63/H73/A74/H77) Assembly Stabilized by Interprotein Zinc Coordination
Descriptor: CALCIUM ION, PROTOPORPHYRIN IX CONTAINING FE, Soluble cytochrome b562, ...
Authors:Tezcan, F.A, Salgado, E.N, Lewis, R.A, Faraone-Mennella, J.
Deposit date:2008-02-02
Release date:2008-05-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Metal-mediated self-assembly of protein superstructures: influence of secondary interactions on protein oligomerization and aggregation.
J.Am.Chem.Soc., 130, 2008
3C62
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BU of 3c62 by Molmil
Tetrameric Cytochrome cb562 (H59/D62/H63/H73/A74/H77) Assembly Stabilized by Interprotein Zinc Coordination
Descriptor: CALCIUM ION, PROTOPORPHYRIN IX CONTAINING FE, Soluble cytochrome b562, ...
Authors:Tezcan, F.A, Salgado, E.N, Lewis, R.A, Faraone-Mennella, J.
Deposit date:2008-02-02
Release date:2008-05-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Metal-mediated self-assembly of protein superstructures: influence of secondary interactions on protein oligomerization and aggregation.
J.Am.Chem.Soc., 130, 2008
6OJ6
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BU of 6oj6 by Molmil
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (DLP_RNA)
Descriptor: Inner capsid protein VP2, RNA-directed RNA polymerase, Template, ...
Authors:Jenni, S, Salgado, E.N, Herrmann, T, Li, Z, Grant, T, Grigorieff, N, Trapani, S, Estrozi, L.F, Harrison, S.C.
Deposit date:2019-04-10
Release date:2019-04-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:In situ Structure of Rotavirus VP1 RNA-Dependent RNA Polymerase.
J.Mol.Biol., 431, 2019
7UMT
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BU of 7umt by Molmil
Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 - Reversed conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Intermediate capsid protein VP6, ...
Authors:Jenni, S, Zongli, L, Wang, Y, Bessey, T, Salgado, E.N, Schmidt, A.G, Greenberg, H.B, Jiang, B, Harrison, S.C.
Deposit date:2022-04-07
Release date:2022-07-27
Last modified:2022-08-31
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Rotavirus VP4 Epitope of a Broadly Neutralizing Human Antibody Defined by Its Structure Bound with an Attenuated-Strain Virion.
J.Virol., 96, 2022
7UMS
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BU of 7ums by Molmil
Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 in complex with antibody 41 - Upright conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Fab 41 heavy chain, ...
Authors:Jenni, S, Zongli, L, Wang, Y, Bessey, T, Salgado, E.N, Schmidt, A.G, Greenberg, H.B, Jiang, B, Harrison, S.C.
Deposit date:2022-04-07
Release date:2022-07-27
Last modified:2022-08-31
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Rotavirus VP4 Epitope of a Broadly Neutralizing Human Antibody Defined by Its Structure Bound with an Attenuated-Strain Virion.
J.Virol., 96, 2022
6OJ3
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BU of 6oj3 by Molmil
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (TLP)
Descriptor: Inner capsid protein VP2, RNA-directed RNA polymerase
Authors:Jenni, S, Salgado, E.N, Herrmann, T, Li, Z, Grant, T, Grigorieff, N, Trapani, S, Estrozi, L.F, Harrison, S.C.
Deposit date:2019-04-10
Release date:2019-04-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:In situ Structure of Rotavirus VP1 RNA-Dependent RNA Polymerase.
J.Mol.Biol., 431, 2019
6OJ5
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BU of 6oj5 by Molmil
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (TLP_RNA)
Descriptor: Inner capsid protein VP2, RNA-directed RNA polymerase
Authors:Jenni, S, Salgado, E.N, Herrmann, T, Li, Z, Grant, T, Grigorieff, N, Trapani, S, Estrozi, L.F, Harrison, S.C.
Deposit date:2019-04-10
Release date:2019-04-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (5.2 Å)
Cite:In situ Structure of Rotavirus VP1 RNA-Dependent RNA Polymerase.
J.Mol.Biol., 431, 2019
6OJ4
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BU of 6oj4 by Molmil
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (DLP)
Descriptor: Inner capsid protein VP2, RNA-directed RNA polymerase
Authors:Jenni, S, Salgado, E.N, Herrmann, T, Li, Z, Grant, T, Grigorieff, N, Trapani, S, Estrozi, L.F, Harrison, S.C.
Deposit date:2019-04-10
Release date:2019-04-24
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:In situ Structure of Rotavirus VP1 RNA-Dependent RNA Polymerase.
J.Mol.Biol., 431, 2019
6WXF
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BU of 6wxf by Molmil
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Intermediate conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Intermediate capsid protein VP6, ...
Authors:Herrmann, T, Harrison, S.C, Jenni, S.
Deposit date:2020-05-10
Release date:2021-01-20
Last modified:2021-03-10
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:Functional refolding of the penetration protein on a non-enveloped virus.
Nature, 590, 2021
6WXG
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BU of 6wxg by Molmil
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Reversed conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Intermediate capsid protein VP6, ...
Authors:Herrmann, T, Harrison, S.C, Jenni, S.
Deposit date:2020-05-10
Release date:2021-01-20
Last modified:2021-03-10
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Functional refolding of the penetration protein on a non-enveloped virus.
Nature, 590, 2021
6WXE
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BU of 6wxe by Molmil
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Upright conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Intermediate capsid protein VP6, ...
Authors:Herrmann, T, Harrison, S.C, Jenni, S.
Deposit date:2020-05-10
Release date:2021-01-20
Last modified:2021-03-10
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Functional refolding of the penetration protein on a non-enveloped virus.
Nature, 590, 2021
3M79
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BU of 3m79 by Molmil
A tetrameric Zn-bound cytochrome cb562 complex with covalently and non-covalently stabilized interfaces crystallized in the presence of Cu(II) and Zn(II)
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Soluble cytochrome b562, ZINC ION
Authors:Brodin, J.D, Tezcan, F.A.
Deposit date:2010-03-16
Release date:2010-06-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Evolution of metal selectivity in templated protein interfaces.
J.Am.Chem.Soc., 132, 2010
3HG4
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BU of 3hg4 by Molmil
Human alpha-galactosidase catalytic mechanism 3. Covalent intermediate
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Guce, A.I, Clark, N.E, Garman, S.C.
Deposit date:2009-05-13
Release date:2009-11-24
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Catalytic mechanism of human alpha-galactosidase.
J.Biol.Chem., 285, 2010
3HG5
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BU of 3hg5 by Molmil
Human alpha-galactosidase catalytic mechanism 4. Product bound
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETIC ACID, Alpha-galactosidase A, ...
Authors:Guce, A.I, Clark, N.E, Garman, S.C.
Deposit date:2009-05-13
Release date:2009-11-24
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Catalytic mechanism of human alpha-galactosidase.
J.Biol.Chem., 285, 2010

 

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