Author results

2YZ8
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CRYSTAL STRUCTURE OF THE 32TH IG-LIKE DOMAIN OF HUMAN OBSCURIN (KIAA1556)
Descriptor:Obscurin
Authors:Saijo, S., Ohsawa, N., Nishino, A., Kishishita, S., Chen, L., Fu, Z.Q., Chrzas, J., Wang, B.C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-04
Release date:2008-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the 32th Ig-like domain of human obscurin (KIAA1556)
To be Published
2Z0A
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CRYSTAL STRUCTURE OF RNA-BINDING DOMAIN OF NS1 FROM INFLUENZA A VIRUS A/CROW/KYOTO/T1/2004(H5N1)
Descriptor:Nonstructural protein 1, GLYCINE, SUCCINIC ACID
Authors:Saijo, S., Kishishita, S., Kamo-Uchikubo, T., Terada, T., Shirouzu, M., Ito, H., Ito, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2008-05-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of RNA-binding domain of NS1 from influenza A virus A/crow/Kyoto/T1/2004(H5N1)
To be Published
2Z0B
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CRYSTAL STRUCTURE OF CBM20 DOMAIN OF HUMAN PUTATIVE GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 5 (KIAA1434)
Descriptor:Putative glycerophosphodiester phosphodiesterase 5, PHOSPHATE ION
Authors:Saijo, S., Nishino, A., Kishishita, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2008-05-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of CBM20 domain of human putative glycerophosphodiester phosphodiesterase 5 (KIAA1434)
To be Published
2Z16
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CRYSTAL STRUCTURE OF MATRIX PROTEIN 1 FROM INFLUENZA A VIRUS A/CROW/KYOTO/T1/2004(H5N1)
Descriptor:Matrix protein 1
Authors:Saijo, S., Kishishita, S., Uchikubo-Kamo, T., Terada, T., Shirouzu, M., Ito, H., Ito, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-08
Release date:2008-05-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal structure of Matrix protein 1 from influenza A virus A/crow/Kyoto/T1/2004(H5N1)
To be Published
3AON
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CRYSTAL STRUCTURE OF THE CENTRAL AXIS (NTPD-NTPG) IN THE CATALYTIC PORTION OF ENTEROCOCCUS HIRAE V-TYPE SODIUM ATPASE
Descriptor:V-type sodium ATPase subunit D, V-type sodium ATPase subunit G, NITRATE ION
Authors:Saijo, S., Arai, S., Hossain, K.M.M., Yamato, I., Kakinuma, Y., Ishizuka-Katsura, Y., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Murata, T.
Deposit date:2010-10-04
Release date:2011-10-05
Last modified:2011-12-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of the central axis DF complex of the prokaryotic V-ATPase
Proc.Natl.Acad.Sci.USA, 108, 2011
1WTM
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X-RAY STRUCTURE OF HEW LYSOZYME ORTHORHOMBIC CRYSTAL FORMED IN THE EARTH'S MAGNETIC FIELD
Descriptor:Lysozyme C, CHLORIDE ION
Authors:Saijo, S., Yamada, Y., Sato, T., Tanaka, N., Matsui, T., Sazaki, G., Nakajima, K., Matsuura, Y.
Deposit date:2004-11-25
Release date:2004-12-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Structural consequences of hen egg-white lysozyme orthorhombic crystal growth in a high magnetic field: validation of X-ray diffraction intensity, conformational energy searching and quantitative analysis of B factors and mosaicity.
Acta Crystallogr.,Sect.D, 61, 2005
1WTN
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THE STRUCTURE OF HEW LYSOZYME ORTHORHOMBIC CRYSTAL GROWTH UNDER A HIGH MAGNETIC FIELD
Descriptor:Lysozyme C, CHLORIDE ION
Authors:Saijo, S., Yamada, Y., Sato, T., Tanaka, N., Matsui, T., Sazaki, G., Nakajima, K., Matsuura, Y.
Deposit date:2004-11-25
Release date:2004-12-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Structural consequences of hen egg-white lysozyme orthorhombic crystal growth in a high magnetic field: validation of X-ray diffraction intensity, conformational energy searching and quantitative analysis of B factors and mosaicity.
Acta Crystallogr.,Sect.D, 61, 2005
3VZ6
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CRYSTAL STRUCTURE ANALYSIS OF THE MINI-CHAPERONINES, VARIANT WITH GLY 184 REPLACED WITH ILE AND LEU 185 REPLACED VAL AND VAL 186 REPLACED WITH LEU.
Descriptor:60 kDa chaperonin
Authors:Saijo, S., Sato, T.
Deposit date:2012-10-09
Release date:2013-11-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Binding Energy(BE) from Crystal Packing of Mini-chaperones (mcpn) Provided Insights into the Allosteric Interaction of GroEL/ES Complex
To be Published
3VZ7
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CRYSTAL STRUCTURE ANALYSIS OF THE MINI-CHAPERONIN VARIANT WITH PRO 187 GLY
Descriptor:60 kDa chaperonin
Authors:Saijo, S., Sato, T.
Deposit date:2012-10-09
Release date:2013-11-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Binding Energy(BE) from Crystal Packing of Mini-chaperones (mcpn) Provided Insights into the Allosteric Interaction of GroEL/ES Complex
To be Published
3VZ8
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CRYSTAL STRUCTURE ANALYSIS OF THE MINI-CHAPERONIN VARIANT WITH LEU 185, VAL 186, PRO 187, ARG 188 AND SER 190 REPLACED WITH ALL GLY
Descriptor:60 kDa chaperonin
Authors:Saijo, S., Sato, T.
Deposit date:2012-10-09
Release date:2013-11-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Binding Energy(BE) from Crystal Packing of Mini-chaperones (mcpn) Provided Insights into the Allosteric Interaction of GroEL/ES Complex
To be Published
2DYQ
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CRYSTAL STRUCTURE OF THE C-TERMINAL PHOPHOTYROSINE INTERACTION DOMAIN OF HUMAN APBB3
Descriptor:Amyloid beta A4 precursor protein-binding family B member 3
Authors:Nishino, A., Saijo, S., Kishishita, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-16
Release date:2007-09-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal Structure of the C-terminal Phophotyrosine Interaction Domain of Human APBB3
To be Published
2E3V
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CRYSTAL STRUCTURE OF THE FIRST FIBRONECTIN TYPE III DOMAIN OF NEURAL CELL ADHESION MOLECULE SPLICING ISOFORM FROM HUMAN MUSCLE CULTURE LAMBDA-4.4
Descriptor:Neural cell adhesion molecule 1, 140 kDa isoform, DI(HYDROXYETHYL)ETHER, ...
Authors:Nishino, A., Saijo, S., Kishishita, S., Chen, L., Liu, Z.J., Wang, B.C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-11-30
Release date:2007-06-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of the first fibronectin type III domain of neural cell adhesion molecule splicing isoform from human muscle culture lambda-4.4
To be Published
2YZA
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CRYSTAL STRUCTURE OF KINASE DOMAIN OF HUMAN 5'-AMP-ACTIVATED PROTEIN KINASE ALPHA-2 SUBUNIT MUTANT (T172D)
Descriptor:5'-AMP-activated protein kinase catalytic subunit alpha-2
Authors:Saijo, S., Takagi, T., Yoshikawa, S., Kishishita, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-04
Release date:2008-05-06
Last modified:2012-04-11
Method:X-RAY DIFFRACTION (3.02 Å)
Cite:Structural basis for compound C inhibition of the human AMP-activated protein kinase alpha 2 subunit kinase domain
Acta Crystallogr.,Sect.D, 67, 2011
3VR4
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CRYSTAL STRUCTURE OF ENTEROCOCCUS HIRAE V1-ATPASE [EV1]
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ...
Authors:Saijo, S., Arai, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.
Deposit date:2012-04-03
Release date:2013-01-09
Last modified:2013-02-06
Method:X-RAY DIFFRACTION (2.172 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR5
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CRYSTAL STRUCTURE OF NUCLEOTIDE-FREE ENTEROCOCCUS HIRAE V1-ATPASE [EV1(L)]
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ...
Authors:Saijo, S., Arai, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VH9
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CRYSTAL STRUCTURE OF AEROMONAS PROTEOLYTICA AMINOPEPTIDASE COMPLEXED WITH 8-QUINOLINOL
Descriptor:Bacterial leucyl aminopeptidase, ZINC ION, quinolin-8-ol, ...
Authors:Saijo, S., Hanaya, K., Suetsugu, M., Kobayashi, K., Yamato, I., Aoki, S.
Deposit date:2011-08-24
Release date:2012-05-02
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Potent inhibition of dinuclear zinc(II) peptidase, an aminopeptidase from Aeromonas proteolytica, by 8-quinolinol derivatives: inhibitor design based on Zn(2+) fluorophores, kinetic, and X-ray crystallographic study.
J.Biol.Inorg.Chem., 17, 2012
5HP5
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SRTUCTURE OF HUMAN PEPTIDYLARGININE DEIMINASE TYPE I (PAD1)
Descriptor:Protein-arginine deiminase type-1, CALCIUM ION
Authors:Unno, M., Nagai, A., Saijo, S., Shimizu, N., Kinjo, S., Mashimo, R., Kizawa, K., Takahara, H.
Deposit date:2016-01-20
Release date:2016-07-27
Last modified:2016-08-17
Method:X-RAY DIFFRACTION (3.198 Å)
Cite:Monomeric Form of Peptidylarginine Deiminase Type I Revealed by X-ray Crystallography and Small-Angle X-ray Scattering
J.Mol.Biol., 428, 2016
3AQV
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HUMAN AMP-ACTIVATED PROTEIN KINASE ALPHA 2 SUBUNIT KINASE DOMAIN (T172D) COMPLEXED WITH COMPOUND C
Descriptor:5'-AMP-activated protein kinase catalytic subunit alpha-2, 6-[4-(2-piperidin-1-ylethoxy)phenyl]-3-pyridin-4-ylpyrazolo[1,5-a]pyrimidine
Authors:Handa, N., Takagi, T., Saijo, S., Kishishita, S., Toyama, M., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2010-11-19
Release date:2011-04-27
Last modified:2012-04-11
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structural basis for compound C inhibition of the human AMP-activated protein kinase alpha 2 subunit kinase domain
Acta Crystallogr.,Sect.D, 67, 2011
3VR2
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CRYSTAL STRUCTURE OF NUCLEOTIDE-FREE A3B3 COMPLEX FROM ENTEROCOCCUS HIRAE V-ATPASE [EA3B3]
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B
Authors:Arai, S., Saijo, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2013-02-06
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR3
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CRYSTAL STRUCTURE OF AMP-PNP BOUND A3B3 COMPLEX FROM ENTEROCOCCUS HIRAE V-ATPASE [BA3B3]
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Arai, S., Saijo, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2013-02-06
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
3VR6
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CRYSTAL STRUCTURE OF AMP-PNP BOUND ENTEROCOCCUS HIRAE V1-ATPASE [BV1]
Descriptor:V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ...
Authors:Arai, S., Saijo, S., Suzuki, K., Mizutani, K., Kakinuma, Y., Ishizuka-Katsura, Y., Ohsawa, N., Terada, T., Shirouzu, M., Yokoyama, S., Iwata, S., Yamato, I., Murata, T.
Deposit date:2012-04-03
Release date:2013-01-16
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures
Nature, 493, 2013
5XGC
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CRYSTAL STRUCTURE OF SMGGDS-558
Descriptor:Rap1 GTPase-GDP dissociation stimulator 1
Authors:Shimizu, H., Toma-Fukai, S., Shimizu, T.
Deposit date:2017-04-13
Release date:2017-06-28
Last modified:2017-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure-based analysis of the guanine nucleotide exchange factor SmgGDS reveals armadillo-repeat motifs and key regions for activity and GTPase binding
J. Biol. Chem., 292, 2017
2ZFD
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THE CRYSTAL STRUCTURE OF PLANT SPECIFIC CALCIUM BINDING PROTEIN ATCBL2 IN COMPLEX WITH THE REGULATORY DOMAIN OF ATCIPK14
Descriptor:Calcineurin B-like protein 2, Putative uncharacterized protein T20L15_90, CALCIUM ION, ...
Authors:Akaboshi, M., Hashimoto, H., Ishida, H., Koizumi, N., Sato, M., Shimizu, T.
Deposit date:2007-12-29
Release date:2008-02-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The crystal structure of plant-specific calcium-binding protein AtCBL2 in complex with the regulatory domain of AtCIPK14
J.Mol.Biol., 377, 2008
5XJA
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THE CRYSTAL STRUCTURE OF THE MINIMAL CORE DOMAIN OF THE MICROTUBULE DEPOLYMERIZER KIF2C COMPLEXED WITH ADP-MG-ALFX
Descriptor:Kinesin-like protein KIF2C, MAGNESIUM ION, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Ogawa, T., Jiang, X., Hirokawa, N.
Deposit date:2017-04-30
Release date:2017-09-13
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (3.43 Å)
Cite:Mechanism of Catalytic Microtubule Depolymerization via KIF2-Tubulin Transitional Conformation
Cell Rep, 20, 2017
5XJB
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THE CRYSTAL STRUCTURE OF THE MINIMAL CORE DOMAIN OF THE MICROTUBULE DEPOLYMERIZER KIF2C COMPLEXED WITH ADP-MG-BEFX
Descriptor:Kinesin-like protein KIF2C, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Ogawa, T., Jiang, X., Hirokawa, N.
Deposit date:2017-04-30
Release date:2017-09-13
Last modified:2017-09-27
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Mechanism of Catalytic Microtubule Depolymerization via KIF2-Tubulin Transitional Conformation
Cell Rep, 20, 2017
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