Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4FFK
DownloadVisualize
BU of 4ffk by Molmil
X-ray structure of iron superoxide dismutase from Acidilobus saccharovorans
Descriptor: FE (III) ION, Superoxide dismutase
Authors:Safonova, T.N, Slutskaya, E.S, Dorovatovsky, P.V, Bezsudnova, E.Yu, Mardanov, A.V, Gumerov, V.M, Ravin, N.V, Skryabin, K.G, Popov, V.O, Polyakov, K.M.
Deposit date:2012-06-01
Release date:2012-06-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:X-ray structure of iron superoxide dismutase from Acidilobus saccharovorans
TO BE PUBLISHED
4YJK
DownloadVisualize
BU of 4yjk by Molmil
Crystal structure of C212S mutant of Shewanella oneidensis MR-1 uridine phosphorylase
Descriptor: SULFATE ION, URACIL, Uridine phosphorylase
Authors:Safonova, T.N, Mordkovich, N.N, Manuvera, V.A, Dorovatovsky, P.V, Veiko, V.P, Popov, V.O, Polyakov, K.M.
Deposit date:2015-03-03
Release date:2015-03-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Concerted action of two subunits of the functional dimer of Shewanella oneidensis MR-1 uridine phosphorylase derived from a comparison of the C212S mutant and the wild-type enzyme.
Acta Crystallogr D Struct Biol, 72, 2016
4R2W
DownloadVisualize
BU of 4r2w by Molmil
X-ray structure of uridine phosphorylase from Shewanella oneidensis MR-1 in complex with uridine at 1.6 A resolution
Descriptor: GLYCEROL, SULFATE ION, URIDINE, ...
Authors:Safonova, T.N, Mordkovich, N.N, Manuvera, V.A, Veiko, V.P, Popov, V.O, Polyakov, K.P.
Deposit date:2014-08-13
Release date:2014-12-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High-syn conformation of uridine and asymmetry of the hexameric molecule revealed in the high-resolution structures of Shewanella oneidensis MR-1 uridine phosphorylase in the free form and in complex with uridine.
Acta Crystallogr.,Sect.D, 70, 2014
4R2X
DownloadVisualize
BU of 4r2x by Molmil
Unique conformation of uridine and asymmetry of the hexameric molecule revealed in the high-resolution structures of Shewanella oneidensis uridine phosphorylase in the free form and in complex with uridine
Descriptor: CHLORIDE ION, GLYCEROL, SULFATE ION, ...
Authors:Safonova, T.N, Mordkovich, N.N, Manuvera, V.A, Veiko, V.P, Popov, V.O, Polyakov, K.M.
Deposit date:2014-08-13
Release date:2014-12-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (0.93 Å)
Cite:High-syn conformation of uridine and asymmetry of the hexameric molecule revealed in the high-resolution structures of Shewanella oneidensis MR-1 uridine phosphorylase in the free form and in complex with uridine.
Acta Crystallogr.,Sect.D, 70, 2014
2GDM
DownloadVisualize
BU of 2gdm by Molmil
LEGHEMOGLOBIN (OXY)
Descriptor: LEGHEMOGLOBIN (OXY), OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Harutyunyan, E.H, Safonova, T.N, Kuranova, I.P, Popov, A.N, Teplyakov, A.V, Obmolova, G.V, Rusakov, A.A, Dodson, G.G, Wilson, J.C, Perutz, M.F.
Deposit date:1994-09-14
Release date:1995-10-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Structure of Deoxy-and Oxy-Leghaemoglobin from Lupin
J.Mol.Biol., 251, 1995
8RV0
DownloadVisualize
BU of 8rv0 by Molmil
Crystal structure of octaheme nitrite reductase from Trichlorobacter ammonificans in complex with nitrite
Descriptor: CALCIUM ION, HEME C, NITRIC OXIDE, ...
Authors:Polyakov, K.M, Safonova, T.N, Osipov, E, Popov, A.N, Tikhonova, T.V, Popov, V.O.
Deposit date:2024-01-31
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of octaheme nitrite reductase from Trichlorobacter ammonificans in complex with nitrite
To Be Published
8RXU
DownloadVisualize
BU of 8rxu by Molmil
Crystal structure of octaheme nitrite reductase from Trichlorobacter ammonificans in space group P21
Descriptor: CALCIUM ION, HEME C, Octaheme nitrite reductase, ...
Authors:Polyakov, K.M, Safonova, T.N, Osipov, E, Popov, A.N, Tikhonova, T.V, Popov, V.O.
Deposit date:2024-02-08
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.737 Å)
Cite:Crystal structure of octaheme nitrite reductase from Trichlorobacter ammonificans in space group P21
To Be Published
1GDK
DownloadVisualize
BU of 1gdk by Molmil
CRYSTAL STRUCTURE OF FERRIC COMPLEXES OF THE YELLOW LUPIN LEGHEMOGLOBIN WITH ISOQUINOLINE AT 1.8 ANGSTROMS RESOLUTION (RUSSIAN)
Descriptor: ISOQUINOLINE, LEGHEMOGLOBIN (ISOQUINOLINE MET), PROTOPORPHYRIN IX CONTAINING FE
Authors:Harutyunyan, E, Safonova, T, Kuranova, I.
Deposit date:1994-09-14
Release date:1995-02-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of Ferric Complexes of the Yellow Lupin Leghemoglobin with Isoquinoline at 1.8 Angstroms Resolution (Russian)
Bioorg.Khim., 17, 1991
1GDJ
DownloadVisualize
BU of 1gdj by Molmil
CRYSTAL STRUCTURE OF FERRIC COMPLEXES OF THE YELLOW LUPIN LEGHEMOGLOBIN WITH ISOQUINOLINE AT 1.8 ANGSTROMS RESOLUTION (RUSSIAN)
Descriptor: LEGHEMOGLOBIN (DEOXY), PROTOPORPHYRIN IX CONTAINING FE
Authors:Harutyunyan, E, Safonova, T, Kuranova, I.
Deposit date:1994-09-14
Release date:1995-02-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Structure of Deoxy- and Oxy-Leghaemoglobin from Lupin
J.Mol.Biol., 251, 1995
1GDI
DownloadVisualize
BU of 1gdi by Molmil
CRYSTAL STRUCTURE OF FERRIC COMPLEXES OF THE YELLOW LUPIN LEGHEMOGLOBIN WITH ISOQUINOLINE AT 1.8 ANGSTROMS RESOLUTION (RUSSIAN)
Descriptor: CARBON MONOXIDE, LEGHEMOGLOBIN (CARBONMONOXY), PROTOPORPHYRIN IX CONTAINING FE
Authors:Harutyunyan, E, Safonova, T, Kuranova, I.
Deposit date:1994-09-14
Release date:1995-02-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The binding of carbon monoxide and nitric oxide to leghaemoglobin in comparison with other haemoglobins.
J.Mol.Biol., 264, 1996
1GDL
DownloadVisualize
BU of 1gdl by Molmil
CRYSTAL STRUCTURE OF FERRIC COMPLEXES OF THE YELLOW LUPIN LEGHEMOGLOBIN WITH ISOQUINOLINE AT 1.8 ANGSTROMS RESOLUTION (RUSSIAN)
Descriptor: LEGHEMOGLOBIN (NITROGEN MONOXY), NITRIC OXIDE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Harutyunyan, E, Safonova, T, Kuranova, I.
Deposit date:1994-09-14
Release date:1995-02-27
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The binding of carbon monoxide and nitric oxide to leghaemoglobin in comparison with other haemoglobins.
J.Mol.Biol., 264, 1996
3LGQ
DownloadVisualize
BU of 3lgq by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with sulfite (modified Tyr-303)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ...
Authors:Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Filimonenkov, A.A, Tikhonova, T.V, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
Deposit date:2010-01-21
Release date:2011-02-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
5N1T
DownloadVisualize
BU of 5n1t by Molmil
Crystal structure of complex between flavocytochrome c and copper chaperone CopC from T. paradoxus
Descriptor: COPPER (II) ION, CopC, Cytochrome C, ...
Authors:Osipov, E.M, Lilina, A.V, Tikhonova, T.V, Tsallagov, S.I, Popov, V.O.
Deposit date:2017-02-06
Release date:2018-02-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of the flavocytochrome c sulfide dehydrogenase associated with the copper-binding protein CopC from the haloalkaliphilic sulfur-oxidizing bacterium Thioalkalivibrio paradoxusARh 1.
Acta Crystallogr D Struct Biol, 74, 2018
3FN4
DownloadVisualize
BU of 3fn4 by Molmil
Apo-form of NAD-dependent formate dehydrogenase from bacterium Moraxella sp.C-1 in closed conformation
Descriptor: GLYCEROL, NAD-dependent formate dehydrogenase, SULFATE ION
Authors:Shabalin, I.G, Polyakov, K.M, Filippova, E.V, Dorovatovskiy, P.V, Tikhonova, T.V, Sadykhov, E.G, Tishkov, V.I, Popov, V.O.
Deposit date:2008-12-23
Release date:2009-12-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structures of the apo and holo forms of formate dehydrogenase from the bacterium Moraxella sp. C-1: towards understanding the mechanism of the closure of the interdomain cleft
Acta Crystallogr.,Sect.D, 65, 2009
3FO3
DownloadVisualize
BU of 3fo3 by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase reduced by sodium dithionite (sulfite complex)
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Slutsky, A, Tikhonova, T.V, Antipov, A.N, Zvyagilskaya, R.A, Popov, A.N, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
Deposit date:2008-12-27
Release date:2009-12-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structures of complexes of octahaem cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens with sulfite and cyanide
Acta Crystallogr.,Sect.D, 66, 2010
7Q2W
DownloadVisualize
BU of 7q2w by Molmil
Mutant T91S of uridine phosphorylase from Shewanella oneidensis
Descriptor: GLYCEROL, SULFATE ION, URACIL, ...
Authors:Polyakov, K, Safonova, T.
Deposit date:2021-10-26
Release date:2022-04-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.654 Å)
Cite:Role of conformational changes of hexameric bacterial uridine phosphorylases in substrate binding
Crystallography Reports, 66, 2021
7Q30
DownloadVisualize
BU of 7q30 by Molmil
Mutant T91A of uridine phosphorylase from Shewanella oneidensis
Descriptor: GLYCEROL, LITHIUM ION, SULFATE ION, ...
Authors:Polyakov, K, Safonova, T.
Deposit date:2021-10-26
Release date:2022-04-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Role of Conformational Changes of Hexameric Bacterial Uridine Phosphorylases in Substrate Binding
Crystallography Reports, 66, 2021
1IGP
DownloadVisualize
BU of 1igp by Molmil
X-RAY CRYSTALLOGRAPHIC STUDIES OF RECOMBINANT INORGANIC PYROPHOSPHATASE FROM ESCHERICHIA COLI
Descriptor: INORGANIC PYROPHOSPHATASE
Authors:Oganessyan, V.Yu, Avaeva, S.M, Harutyunyan, E.H.
Deposit date:1994-08-01
Release date:1994-12-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray crystallographic studies of recombinant inorganic pyrophosphatase from Escherichia coli.
FEBS Lett., 348, 1994
3LG1
DownloadVisualize
BU of 3lg1 by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase reduced by sodium borohydride (in complex with sulfite)
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Filimonenkov, A.A, Dorovatovsky, P.V, Tikhonova, T.V, Popov, V.O.
Deposit date:2010-01-19
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
3MMO
DownloadVisualize
BU of 3mmo by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in complex with cyanide
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ...
Authors:Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Tikhonova, T.V, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
Deposit date:2010-04-20
Release date:2010-09-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structures of complexes of octahaem cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens with sulfite and cyanide.
Acta Crystallogr.,Sect.D, 66, 2010
2GSD
DownloadVisualize
BU of 2gsd by Molmil
NAD-dependent formate dehydrogenase from bacterium Moraxella sp.C2 in complex with NAD and azide
Descriptor: AZIDE ION, NAD-dependent formate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Filippova, E.V, Polyakov, K.M, Tikhonova, T.V, Sadykhov, I.G, Shabalin, I.G, Tishkov, V.I, Popov, V.O.
Deposit date:2006-04-26
Release date:2006-05-09
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structures of the apo and holo forms of formate dehydrogenase from the bacterium Moraxella sp. C-1: towards understanding the mechanism of the closure of the interdomain cleft.
Acta Crystallogr.,Sect.D, 65, 2009
3RKH
DownloadVisualize
BU of 3rkh by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase in a complex with nitrite (full occupancy)
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Tikhonova, T.V, Tikhonov, A.V, Dorovatovskii, P.V, Popov, V.O.
Deposit date:2011-04-18
Release date:2011-06-15
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
3SCE
DownloadVisualize
BU of 3sce by Molmil
Structure of the Thioalkalivibrio nitratireducens cytochrome c nitrite reductase with a covalent bond between the CE1 atom of Tyr303 and the CG atom of Gln360 (TvNiRb)
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, CALCIUM ION, Eight-heme nitrite reductase, ...
Authors:Trofimov, A.A, Polyakov, K.M, Boyko, K.M, Tikhonova, T.V, Popov, V.O.
Deposit date:2011-06-07
Release date:2011-07-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
3UU9
DownloadVisualize
BU of 3uu9 by Molmil
Structure of the free TvNiRb form of Thioalkalivibrio nitratireducens cytochrome c nitrite reductase
Descriptor: CALCIUM ION, Eight-heme nitrite reductase, HEME C, ...
Authors:Trofimov, A.A, Polyakov, K.M, Tikhonova, T.V, Tikhonov, A.V, Dorovatovskii, P.V, Popov, V.O.
Deposit date:2011-11-28
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity.
Acta Crystallogr.,Sect.D, 68, 2012
2OT4
DownloadVisualize
BU of 2ot4 by Molmil
Structure of a hexameric multiheme c nitrite reductase from the extremophile bacterium Thiolkalivibrio nitratireducens
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, ...
Authors:Polyakov, K.M, Boyko, K.M, Slutsky, A, Tikhonova, T.V, Antipov, A.N, Zvyagilskaya, R.A, Popov, A.N, Lamzin, V.S, Bourenkov, G.P, Popov, V.O.
Deposit date:2007-02-07
Release date:2008-04-08
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High-resolution structural analysis of a novel octaheme cytochrome c nitrite reductase from the haloalkaliphilic bacterium Thioalkalivibrio nitratireducens.
J.Mol.Biol., 389, 2009

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon