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2ERV
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BU of 2erv by Molmil
Crystal structure of the outer membrane enzyme PagL
Descriptor: CALCIUM ION, PENTAETHYLENE GLYCOL MONODECYL ETHER, hypothetical protein Paer03002360
Authors:Rutten, L, Geurtsen, J, Lambert, W, Smolenaers, J.J, Bonvin, A.M, van der Ley, P, Egmond, M.R, Gros, P, Tommassen, J.
Deposit date:2005-10-25
Release date:2006-04-11
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure and catalytic mechanism of the LPS 3-O-deacylase PagL from Pseudomonas aeruginosa.
Proc.Natl.Acad.Sci.USA, 103, 2006
3EF3
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BU of 3ef3 by Molmil
cut-1a; NCN-Pt-Pincer-Cutinase Hybrid
Descriptor: (2,6-bis[(dimethylamino-kappaN)methyl]-4-{3-[(S)-ethoxy(4-nitrophenoxy)phosphoryl]propyl}phenyl-kappaC~1~)(chloro)platinum(2+), Cutinase-1
Authors:Rutten, L, Mannie, J.P.B.A, Lutz, M, Gros, P.
Deposit date:2008-09-08
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Solid-state structural characterization of cutinase-ECE-pincer-metal hybrids
Chemistry, 15, 2009
3ESD
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BU of 3esd by Molmil
cut-2b; NCN-Pt-Pincer-Cutinase Hybrid
Descriptor: Cutinase 1, bromo(4-{3-[(R)-ethoxy(4-nitrophenoxy)phosphoryl]propyl}-2,6-bis[(methylsulfanyl-kappaS)methyl]phenyl-kappaC~1~)palladium(2+)
Authors:Rutten, L, Mannie, J.P.B.A, Lutz, M, Gros, P.
Deposit date:2008-10-05
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Solid-state structural characterization of cutinase-ECE-pincer-metal hybrids
Chemistry, 15, 2009
3ESC
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BU of 3esc by Molmil
cut-2a; NCN-Pt-Pincer-Cutinase Hybrid
Descriptor: Cutinase 1, bromo(4-{3-[(R)-ethoxy(4-nitrophenoxy)phosphoryl]propyl}-2,6-bis[(methylsulfanyl-kappaS)methyl]phenyl-kappaC~1~)palladium(2+)
Authors:Rutten, L, Mannie, J.P.B.A, Lutz, M, Gros, P.
Deposit date:2008-10-05
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Solid-state structural characterization of cutinase-ECE-pincer-metal hybrids
Chemistry, 15, 2009
3ESA
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BU of 3esa by Molmil
cut-1b; NCN-Pt-Pincer-Cutinase Hybrid
Descriptor: (2,6-bis[(dimethylamino-kappaN)methyl]-4-{3-[(S)-ethoxy(4-nitrophenoxy)phosphoryl]propyl}phenyl-kappaC~1~)(chloro)platinum(2+), Cutinase 1
Authors:Rutten, L, Mannie, J.P.B.A, Lutz, M, Gros, P.
Deposit date:2008-10-05
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Solid-state structural characterization of cutinase-ECE-pincer-metal hybrids
Chemistry, 15, 2009
3ESB
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BU of 3esb by Molmil
cut-1c; NCN-Pt-Pincer-Cutinase Hybrid
Descriptor: (2,6-bis[(dimethylamino-kappaN)methyl]-4-{3-[(S)-ethoxy(4-nitrophenoxy)phosphoryl]propyl}phenyl-kappaC~1~)(chloro)platinum(2+), CHLORIDE ION, Cutinase 1
Authors:Rutten, L, Mannie, J.P.B.A, Lutz, M, Gros, P.
Deposit date:2008-10-05
Release date:2009-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Solid-state structural characterization of cutinase-ECE-pincer-metal hybrids
Chemistry, 15, 2009
3FID
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BU of 3fid by Molmil
LpxR from Salmonella typhimurium
Descriptor: GLYCEROL, PENTAETHYLENE GLYCOL MONODECYL ETHER, Putative outer membrane protein (LpxR), ...
Authors:Rutten, L, Gros, P.
Deposit date:2008-12-11
Release date:2009-02-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Active-site architecture and catalytic mechanism of the lipid A deacylase LpxR of Salmonella typhimurium
Proc.Natl.Acad.Sci.USA, 106, 2009
6VKM
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BU of 6vkm by Molmil
Crystal Structure of Stabilized GP from Makona Variant of Ebola Virus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Virion spike glycoprotein
Authors:Gilman, M.S.A, Rutten, L, Langedijk, J.P.M, McLellan, J.S.
Deposit date:2020-01-21
Release date:2020-04-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure-Based Design of Prefusion-Stabilized Filovirus Glycoprotein Trimers.
Cell Rep, 30, 2020
7A4N
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BU of 7a4n by Molmil
Cryo-EM structure of a prefusion stabilized SARS-CoV-2 Spike (D614N, R682S, R685G, A892P, A942P and V987P)(S-closed trimer)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin
Authors:Rutten, L, Renault, L.L.R, Juraszek, J, Langedijk, J.P.M.
Deposit date:2020-08-20
Release date:2020-11-04
Last modified:2021-01-27
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Stabilizing the closed SARS-CoV-2 spike trimer.
Nat Commun, 12, 2021
7AD1
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BU of 7ad1 by Molmil
Cryo-EM structure of a prefusion stabilized SARS-CoV-2 Spike (D614N, R682S, R685G, A892P, A942P and V987P)(One up trimer)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Envelope glycoprotein,Spike glycoprotein,Envelope glycoprotein,SARS-CoV-2 S protein
Authors:Rutten, L, Renault, L.L.R, Juraszek, J, Langedijk, J.P.M.
Deposit date:2020-09-14
Release date:2020-11-04
Last modified:2021-01-27
Method:ELECTRON MICROSCOPY (2.92 Å)
Cite:Stabilizing the closed SARS-CoV-2 spike trimer.
Nat Commun, 12, 2021
2BH9
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BU of 2bh9 by Molmil
X-RAY STRUCTURE OF A DELETION VARIANT OF HUMAN GLUCOSE 6-PHOSPHATE DEHYDROGENASE COMPLEXED WITH STRUCTURAL AND COENZYME NADP
Descriptor: GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE, GLYCEROL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Gover, S, Vandeputte-Rutten, L, Au, S.W.N, Adams, M.J.
Deposit date:2005-01-08
Release date:2005-04-25
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Studies of Glucose-6-Phosphate and Nadp+ Binding to Human Glucose-6-Phosphate Dehydrogenase
Acta Crystallogr.,Sect.D, 61, 2005
8FU8
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BU of 8fu8 by Molmil
Structure of Covid Spike variant deltaN135 with one erect RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Yu, X, Juraszek, J, Rutten, L, Bakkers, M.J.G, Blokland, S, Van den Broek, N.J.F, Verwilligen, A.Y.W, Abeywickrema, P, Vingerhoets, J, Neefs, J, Bakhash, S.A.M, Roychoudhury, P, Greninger, A, Sharma, S, Langedijk, J.P.M.
Deposit date:2023-01-16
Release date:2023-04-05
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Structure of Covid Spike variant deltaN135 with one erect RBD
To Be Published
8FU7
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BU of 8fu7 by Molmil
Structure of Covid Spike variant deltaN135 in fully closed form
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Yu, X, Juraszek, J, Rutten, L, Bakkers, M.J.G, Blokland, S, Van den Broek, N.J.F, Verwilligen, A.Y.W, Abeywickrema, P, Vingerhoets, J, Neefs, J, Bakhash, S.A.M, Roychoudhury, P, Greninger, A, Sharma, S, Langedijk, J.P.M.
Deposit date:2023-01-16
Release date:2023-04-05
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Structure of Covid Spike variant deltaN135 in fully closed form
To Be Published
8FU9
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BU of 8fu9 by Molmil
Structure of Covid Spike variant deltaN25 with one erect RBD
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
Authors:Yu, X, Juraszek, J, Rutten, L, Bakkers, M.J.G, Blokland, S, Van den Broek, N.J.F, Verwilligen, A.Y.W, Abeywickrema, P, Vingerhoets, J, Neefs, J, Bakhash, S.A.M, Roychoudhury, P, Greninger, A, Sharma, S, Langedijk, J.P.M.
Deposit date:2023-01-16
Release date:2023-04-05
Method:ELECTRON MICROSCOPY (3.52 Å)
Cite:Structure of Covid Spike variant deltaN25 with one erect RBD
To Be Published
1P4T
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BU of 1p4t by Molmil
Crystal structure of Neisserial surface protein A (NspA)
Descriptor: ETHANOLAMINE, PENTAETHYLENE GLYCOL MONODECYL ETHER, SULFATE ION, ...
Authors:Vandeputte-Rutten, L, Bos, M.P, Tommassen, J, Gros, P.
Deposit date:2003-04-24
Release date:2003-07-22
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of Neisserial Surface Protein A (NspA), a conserved outer membrane protein with vaccine potential
J.Biol.Chem., 278, 2003
1E77
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BU of 1e77 by Molmil
COMPLEX OF ACTIVE MUTANT (Q365->C) OF GLUCOSE 6-PHOSPHATE DEHYDROGENASE FROM LEUCONOSTOC MESENTEROIDES WITH SUBSTRATE
Descriptor: 6-O-phosphono-beta-D-glucopyranose, CALCIUM ION, GLUCOSE 6-PHOSPHATE 1-DEHYDROGENASE
Authors:Adams, M.J, Vandeputte-Rutten, L, Gover, S.
Deposit date:2000-08-24
Release date:2000-12-11
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:An Examination of the Role of Asp-177 in the His-Asp Catalytic Dyad of Leuconostoc Mesenteroides Glucose 6-Phosphate Dehydrogenase: X-Ray Structure and Ph Dependence of Kinetic Parameters of the D177N Mutant Enzyme
Biochemistry, 39, 2000
1I78
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BU of 1i78 by Molmil
CRYSTAL STRUCTURE OF OUTER MEMBRANE PROTEASE OMPT FROM ESCHERICHIA COLI
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, PROTEASE VII, octyl beta-D-glucopyranoside
Authors:Vandeputte-Rutten, L, Kramer, R.A, Kroon, J, Dekker, N, Egmond, M.R, Gros, P.
Deposit date:2001-03-08
Release date:2001-10-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the outer membrane protease OmpT from Escherichia coli suggests a novel catalytic site.
EMBO J., 20, 2001
1MNU
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BU of 1mnu by Molmil
UNLIGANDED BACTERICIDAL ANTIBODY AGAINST NEISSERIA MENINGITIDIS
Descriptor: CADMIUM ION, PROTEIN (IGG2A-KAPPA ANTIBODY MN12H2 (HEAVY CHAIN)), PROTEIN (IGG2A-KAPPA ANTIBODY MN12H2 (LIGHT CHAIN))
Authors:Van Den Elsen, J, Vandeputte-Rutten, L, Kroon, J, Gros, P.
Deposit date:1999-04-30
Release date:1999-05-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Bactericidal antibody recognition of meningococcal PorA by induced fit. Comparison of liganded and unliganded Fab structures.
J.Biol.Chem., 274, 1999
4B5E
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BU of 4b5e by Molmil
Crystal Structure of an amyloid-beta binding single chain antibody PS2-8
Descriptor: GLYCEROL, PS2-8, SULFATE ION
Authors:Beringer, D.X, Dorresteijn, B, Rutten, L, Wienk, H, el Khattabi, M, Kroon-Batenburg, L.M.J, Verrips, C.T.
Deposit date:2012-08-03
Release date:2013-08-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.936 Å)
Cite:Amyloid-Beta Binding Single Chain Antibody Ps2-8
To be Published
4B41
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BU of 4b41 by Molmil
Crystal structure of an amyloid-beta binding single chain antibody G7
Descriptor: ANTIBODY G7, CHLORIDE ION, GLYCEROL
Authors:Beringer, D.X, Dorresteijn, B, Rutten, L, Wienk, H, el Khattabi, M, Kroon-Batenburg, L.M.J, Verrips, C.T.
Deposit date:2012-07-27
Release date:2013-08-07
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.191 Å)
Cite:Crystal Structure of an Amyloid-Beta Binding Single Chain Antibody G7
To be Published
6CK9
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BU of 6ck9 by Molmil
Crystal Structure of HIV-1 ConC_Base0 Prefusion Env Trimer in Complex with Human Antibody Fragment 3H109L and 35O22 variants at 3.5 Angstrom
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Lai, Y.-T, Kwong, P.D.
Deposit date:2018-02-27
Release date:2018-04-25
Last modified:2022-03-23
Method:X-RAY DIFFRACTION (2.714 Å)
Cite:A Universal Approach to Optimize the Folding and Stability of Prefusion-Closed HIV-1 Envelope Trimers.
Cell Rep, 23, 2018
7LPN
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BU of 7lpn by Molmil
Cryo-EM structure of llama J3 VHH antibody in complex with HIV-1 Env BG505 DS-SOSIP.664
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ...
Authors:Gorman, J, Kwong, P.D.
Deposit date:2021-02-12
Release date:2022-02-23
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (3.61 Å)
Cite:Structural basis for llama nanobody recognition and neutralization of HIV-1 at the CD4-binding site.
Structure, 30, 2022
5HM1
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BU of 5hm1 by Molmil
Llama VHH 2E7 in complex with gp41
Descriptor: gp41, lama VHH antibody 2E7
Authors:Hock, M, Caillat, C, Haffke, M, Weissenhorn, W.
Deposit date:2016-01-15
Release date:2017-01-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.962 Å)
Cite:Structure of HIV neutralizing VHH 2E7 in complex with gp41 peptide
To Be Published
2BHL
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BU of 2bhl by Molmil
X-RAY STRUCTURE OF HUMAN GLUCOSE-6-PHOSPHATE DEHYDROGENASE (DELETION VARIANT) COMPLEXED WITH GLUCOSE-6-PHOSPHATE
Descriptor: 6-O-phosphono-beta-D-glucopyranose, GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE, GLYCEROL
Authors:Kotaka, M, Gover, S, Lam, V.M.S, Adams, M.J.
Deposit date:2005-01-13
Release date:2005-04-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Studies of Glucose-6-Phosphate and Nadp+ Binding to Human Glucose-6-Phosphate Dehydrogenase
Acta Crystallogr.,Sect.D, 61, 2005
7R74
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BU of 7r74 by Molmil
Crystal structure of llama VHH antibody in complex with HIV-1 HXBC2 gp120 core
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody C8 VHH domain, Glycoprotein 120
Authors:Zhou, T, Kwong, P.D.
Deposit date:2021-06-24
Release date:2022-03-30
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Structural basis for llama nanobody recognition and neutralization of HIV-1 at the CD4-binding site.
Structure, 30, 2022

 

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