Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
1QO8
DownloadVisualize
BU of 1qo8 by Molmil
The structure of the open conformation of a flavocytochrome c3 fumarate reductase
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, FLAVOCYTOCHROME C3 FUMARATE REDUCTASE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Bamford, V, Dobbin, P.S, Richardson, D.J, Hemmings, A.M.
Deposit date:1999-11-04
Release date:2000-11-02
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Open Conformation of a Flavocytochrome C3 Fumarate Reductase.
Nat.Struct.Biol., 6, 1999
1GU6
DownloadVisualize
BU of 1gu6 by Molmil
Structure of the Periplasmic Cytochrome c Nitrite Reductase from Escherichia coli
Descriptor: CALCIUM ION, CYTOCHROME C552, GLYCEROL, ...
Authors:Bamford, V.A, Angove, H.C, Seward, H.E, Thomson, A.J, Cole, J.A, Butt, J.N, Hemmings, A.M, Richardson, D.J.
Deposit date:2002-01-24
Release date:2002-03-08
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure and Spectroscopy of the Periplasmic Cytochrome C Nitrite Reductase from Escherichia Coli
Biochemistry, 41, 2002
3TOR
DownloadVisualize
BU of 3tor by Molmil
Crystal structure of Escherichia coli NrfA with Europium bound
Descriptor: CALCIUM ION, Cytochrome c nitrite reductase, EUROPIUM ION, ...
Authors:Lockwood, C.W.J, Clarke, T.A, Butt, J.N, Hemmings, A.M, Richardson, D.J.
Deposit date:2011-09-06
Release date:2011-12-07
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Characterization of the active site and calcium binding in cytochrome c nitrite reductases.
Biochem.Soc.Trans., 39, 2011
3PMQ
DownloadVisualize
BU of 3pmq by Molmil
Crystal structure of the outer membrane decaheme cytochrome MtrF
Descriptor: CALCIUM ION, Decaheme cytochrome c MtrF, HEME C
Authors:Clarke, T.A, Edwards, M.J, Richardson, D.J.
Deposit date:2010-11-17
Release date:2011-05-25
Last modified:2023-05-31
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure of a bacterial cell surface decaheme electron conduit.
Proc.Natl.Acad.Sci.USA, 108, 2011
2G8S
DownloadVisualize
BU of 2g8s by Molmil
Crystal structure of the soluble Aldose sugar dehydrogenase (Asd) from Escherichia coli in the apo-form
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Glucose/sorbosone dehydrogenases, ...
Authors:Southall, S.M, Doel, J.J, Richardson, D.J, Oubrie, A.
Deposit date:2006-03-03
Release date:2006-08-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Soluble Aldose Sugar Dehydrogenase from Escherichia coli: A HIGHLY EXPOSED ACTIVE SITE CONFERRING BROAD SUBSTRATE SPECIFICITY.
J.Biol.Chem., 281, 2006
3DAS
DownloadVisualize
BU of 3das by Molmil
Structure of the PQQ-bound form of Aldose Sugar Dehydrogenase (Adh) from Streptomyces coelicolor
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, PYRROLOQUINOLINE QUINONE, ...
Authors:Southall, S.M, Doel, J.J, Oubrie, A, Richardson, D.J.
Deposit date:2008-05-30
Release date:2009-06-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural and Enzymatic Characterization of a Thermostable PQQ-dependent Soluble Aldose Sugar Dehydrogenase
To be Published
2NYA
DownloadVisualize
BU of 2nya by Molmil
Crystal structure of the periplasmic nitrate reductase (NAP) from Escherichia coli
Descriptor: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, IRON/SULFUR CLUSTER, MOLYBDENUM(VI) ION, ...
Authors:Jepson, B.J.N, Richardson, D.J, Hemmings, A.M.
Deposit date:2006-11-20
Release date:2006-12-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Spectropotentiometric and structural analysis of the periplasmic nitrate reductase from Escherichia coli
J.Biol.Chem., 282, 2007
2OZY
DownloadVisualize
BU of 2ozy by Molmil
Crystal structure of E.coli nrfB
Descriptor: Cytochrome c-type protein nrfB, HEME C
Authors:Clarke, T.A, Richardson, D.J, Hemmings, A.M.
Deposit date:2007-02-28
Release date:2007-08-07
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:The crystal structure of the pentahaem c-type cytochrome NrfB and characterization of its solution-state interaction with the pentahaem nitrite reductase NrfA.
Biochem.J., 406, 2007
2P0B
DownloadVisualize
BU of 2p0b by Molmil
Crystal structure of chemically-reduced E.coli nrfB
Descriptor: Cytochrome c-type protein nrfB, HEME C
Authors:Clarke, T.A, Richardson, D.J, Hemmings, A.M.
Deposit date:2007-02-28
Release date:2007-08-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:The crystal structure of the pentahaem c-type cytochrome NrfB and characterization of its solution-state interaction with the pentahaem nitrite reductase NrfA.
Biochem.J., 406, 2007
2PWZ
DownloadVisualize
BU of 2pwz by Molmil
Crystal structure of the apo form of E.Coli malate dehydrogenase
Descriptor: Malate dehydrogenase
Authors:Soderberg, C.A.G, Clarke, T.A, Richardson, D.J, Hemmings, A.M.
Deposit date:2007-05-14
Release date:2007-05-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The X-ray crystal structure of the apo form of E.Coli malate dehydrogenase in space group C2
To be Published
2RDZ
DownloadVisualize
BU of 2rdz by Molmil
High Resolution Crystal Structure of the Escherichia coli Cytochrome c Nitrite Reductase.
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Cytochrome c-552, ...
Authors:Clarke, T.A, Hemmings, A.M, RIchardson, D.J.
Deposit date:2007-09-25
Release date:2008-03-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Role of a Conserved Glutamine Residue in Tuning the Catalytic Activity of Escherichia coli Cytochrome c Nitrite Reductase.
Biochemistry, 47, 2008
2RF7
DownloadVisualize
BU of 2rf7 by Molmil
Crystal structure of the escherichia coli nrfa mutant Q263E
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Cytochrome c-552, ...
Authors:Clarke, T.A, Richardson, D.J, Hemmings, A.M.
Deposit date:2007-09-28
Release date:2008-03-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Role of a Conserved Glutamine Residue in Tuning the Catalytic Activity of Escherichia coli Cytochrome c Nitrite Reductase.
Biochemistry, 47, 2008
4WJY
DownloadVisualize
BU of 4wjy by Molmil
Esherichia coli nitrite reductase NrfA H264N
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Cytochrome c-552, ...
Authors:Clarke, T.A, Edwards, M.J, Lockwood, C.W.J.
Deposit date:2014-10-01
Release date:2015-03-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Resolution of key roles for the distal pocket histidine in cytochrome C nitrite reductases.
J.Am.Chem.Soc., 137, 2015
4XXL
DownloadVisualize
BU of 4xxl by Molmil
Crystal structure of Class 1 cytochrome MtoD from Sideroxydans lithotrophicus ES-1
Descriptor: Cytochrome c class I, HEME C
Authors:Beckwith, C.R, Edwards, M.J, Clarke, T.
Deposit date:2015-01-30
Release date:2015-04-15
Last modified:2019-01-23
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Characterization of MtoD from Sideroxydans lithotrophicus: a cytochrome c electron shuttle used in lithoautotrophic growth.
Front Microbiol, 6, 2015
6R2Q
DownloadVisualize
BU of 6r2q by Molmil
Structure of the Mtr complex
Descriptor: CALCIUM ION, Cystathionine beta-synthase, Decaheme c-type cytochrome, ...
Authors:Clarke, T.A, Edwards, M.J.
Deposit date:2019-03-18
Release date:2020-04-22
Last modified:2020-05-13
Method:X-RAY DIFFRACTION (2.697 Å)
Cite:The Crystal Structure of a Biological Insulated Transmembrane Molecular Wire.
Cell, 181, 2020
7QTH
DownloadVisualize
BU of 7qth by Molmil
Crystal structure of the Shewanella oneidensis MR1 MtrC mutant C453A
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Edwards, M.J, Clarke, T.A.
Deposit date:2022-01-14
Release date:2023-01-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A Cysteine Pair Controls Flavin Reduction by Extracellular Cytochromes during Anoxic/Oxic Environmental Transitions.
Mbio, 14, 2023
6QYC
DownloadVisualize
BU of 6qyc by Molmil
Crystal structure of MtrC from Shewanella baltica OS185
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Decaheme c-type cytochrome, ...
Authors:Clarke, T.A, Edwards, M.J.
Deposit date:2019-03-08
Release date:2020-04-22
Last modified:2020-05-13
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:The Crystal Structure of a Biological Insulated Transmembrane Molecular Wire.
Cell, 181, 2020
3UCP
DownloadVisualize
BU of 3ucp by Molmil
Outer membrane Endecaheme cytochrome UndA from Shewanella sp. HRCR-6
Descriptor: CALCIUM ION, GLYCEROL, HEME C, ...
Authors:Edwards, M.J, Clarke, T.A.
Deposit date:2011-10-27
Release date:2012-08-08
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:The Crystal Structure of the Extracellular 11-heme Cytochrome UndA Reveals a Conserved 10-heme Motif and Defined Binding Site for Soluble Iron Chelates.
Structure, 20, 2012
3UFH
DownloadVisualize
BU of 3ufh by Molmil
Crystal structure of UndA with Iron Citrate bound
Descriptor: CALCIUM ION, CITRATE ANION, FE (III) ION, ...
Authors:Edwards, M.J, Clarke, T.A.
Deposit date:2011-11-01
Release date:2012-08-08
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:The Crystal Structure of the Extracellular 11-heme Cytochrome UndA Reveals a Conserved 10-heme Motif and Defined Binding Site for Soluble Iron Chelates.
Structure, 20, 2012
3UFK
DownloadVisualize
BU of 3ufk by Molmil
Crystal structure of UndA complexed with Iron Nitrilotriacetate
Descriptor: CALCIUM ION, FE (III) ION, GLYCEROL, ...
Authors:Edwards, M.J, Clarke, T.A.
Deposit date:2011-11-01
Release date:2012-08-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Crystal Structure of the Extracellular 11-heme Cytochrome UndA Reveals a Conserved 10-heme Motif and Defined Binding Site for Soluble Iron Chelates.
Structure, 20, 2012
2JSX
DownloadVisualize
BU of 2jsx by Molmil
Solution structure of the E. coli Tat proofreading chaperone protein NapD
Descriptor: Protein napD
Authors:Spronk, C.A.E.M, Vuister, G.W, Sargent, F.
Deposit date:2007-07-17
Release date:2007-08-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural diversity in twin-arginine signal peptide-binding proteins.
Proc.Natl.Acad.Sci.Usa, 104, 2007
4LM8
DownloadVisualize
BU of 4lm8 by Molmil
Crystal structure of the outer membrane decaheme cytochrome MtrC
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Clarke, T.A, Edwards, M.J.
Deposit date:2013-07-10
Release date:2015-02-11
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Redox Linked Flavin Sites in Extracellular Decaheme Proteins Involved in Microbe-Mineral Electron Transfer.
Sci Rep, 5, 2015
4LMH
DownloadVisualize
BU of 4lmh by Molmil
Crystal structure of the outer membrane decaheme cytochrome OmcA
Descriptor: CALCIUM ION, DIMETHYL SULFOXIDE, Extracellular iron oxide respiratory system surface decaheme cytochrome c component OmcA, ...
Authors:Edwards, M.J, Baiden, N, Clarke, T.A.
Deposit date:2013-07-10
Release date:2014-04-16
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Insights into electron transfer at the microbe-mineral interface: the X-ray crystal structures of Shewanella oneidensis MtrC and OmcA
FEBS Letters, 2014
3L1T
DownloadVisualize
BU of 3l1t by Molmil
E. coli NrfA sulfite ocmplex
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Cytochrome c-552, ...
Authors:Clarke, T.A, Hemmings, A.M, Butt, J.N.
Deposit date:2009-12-14
Release date:2010-10-27
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Kinetic and thermodynamic resolution of the interactions between sulfite and the pentahaem cytochrome NrfA from Escherichia coli
Biochem.J., 431, 2010

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon