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1LA6
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BU of 1la6 by Molmil
The crystal structure of Trematomus newnesi hemoglobin in a partial hemichrome state
Descriptor: CARBON MONOXIDE, Hemoglobin alpha-1 chain, Hemoglobin beta-1/2 chain, ...
Authors:Riccio, A, Vitagliano, L, di Prisco, G, Zagari, A, Mazzarella, L.
Deposit date:2002-03-28
Release date:2002-07-31
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of a tetrameric hemoglobin in a partial hemichrome state
Proc.Natl.Acad.Sci.USA, 99, 2002
4UUR
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BU of 4uur by Molmil
Cold-adapted truncated hemoglobin from the Antarctic marine bacterium Pseudoalteromonas haloplanktis TAC125
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, PUTATIVE HEMOGLOBIN-LIKE OXYGEN-BINDING PROTEIN
Authors:Pesce, A, Giordano, D, Riccio, A, Nardini, M, Caldelli, E, Howes, B, Bustamante, J.P, Boechi, L, Estrin, D, di Prisco, G, Smulevich, G, Verde, C, Bolognesi, M.
Deposit date:2014-07-31
Release date:2015-06-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structural Flexibility of the Heme Cavity in the Cold-Adapted Truncated Hemoglobin from the Antarctic Marine Bacterium Pseudoalteromonas Haloplanktis Tac125.
FEBS J., 282, 2015
11BA
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BU of 11ba by Molmil
BINDING OF A SUBSTRATE ANALOGUE TO A DOMAIN SWAPPING PROTEIN IN THE COMPLEX OF BOVINE SEMINAL RIBONUCLEASE WITH URIDYLYL-2',5'-ADENOSINE
Descriptor: PROTEIN (RIBONUCLEASE, SEMINAL), SULFATE ION, ...
Authors:Vitagliano, L, Adinolfi, S, Riccio, A, Sica, F, Zagari, A, Mazzarella, L.
Deposit date:1999-03-17
Release date:1999-03-26
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Binding of a substrate analog to a domain swapping protein: X-ray structure of the complex of bovine seminal ribonuclease with uridylyl(2',5')adenosine.
Protein Sci., 7, 1998
1S5X
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BU of 1s5x by Molmil
The crystal structure of Trematomus bernacchii hemoglobin oxidized by air
Descriptor: Hemoglobin alpha chain, Hemoglobin beta chain, PROTOPORPHYRIN IX CONTAINING FE
Authors:Vitagliano, L, Bonomi, G, Riccio, A, di Prisco, G, Smulevich, G, Mazzarella, L.
Deposit date:2004-01-22
Release date:2004-05-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The oxidation process of Antarctic fish hemoglobins
Eur.J.Biochem., 271, 2004
1S5Y
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BU of 1s5y by Molmil
The crystal structure of Trematomus bernacchii hemoglobin oxidized by ferricyanide
Descriptor: Hemoglobin alpha chain, Hemoglobin beta chain, PROTOPORPHYRIN IX CONTAINING FE
Authors:Vitagliano, L, Bonomi, G, Riccio, A, di Prisco, G, Smulevich, G, Mazzarella, L.
Deposit date:2004-01-22
Release date:2004-05-04
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The oxidation process of Antarctic fish hemoglobins
Eur.J.Biochem., 271, 2004
2AA1
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BU of 2aa1 by Molmil
Crystal structure of the cathodic hemoglobin isolated from the Antarctic fish Trematomus Newnesi
Descriptor: Hemoglobin alpha-1 chain, Hemoglobin beta-C chain, PROTOPORPHYRIN IX CONTAINING FE
Authors:Mazzarella, L, Bonomi, G, Lubrano, M.C, Merlino, A, Riccio, A, Vergara, A, Vitagliano, L, Verde, C, Di Prisco, G.
Deposit date:2005-07-13
Release date:2005-08-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Minimal structural requirements for root effect: crystal structure of the cathodic hemoglobin isolated from the antarctic fish Trematomus newnesi
Proteins, 62, 2006
7ZCF
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BU of 7zcf by Molmil
SARS-CoV-2 Spike RBD in complex with the single chain fragment scFv76 (Focused Refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin, scFv76 single chain fragment
Authors:Chaves-Sanjuan, A, Bolognesi, M.
Deposit date:2022-03-28
Release date:2022-10-12
Last modified:2023-02-08
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Spike mutation resilient scFv76 antibody counteracts SARS-CoV-2 lung damage upon aerosol delivery.
Mol.Ther., 31, 2022
7ZCE
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BU of 7zce by Molmil
SARS-CoV-2 Spike protein in complex with the single chain fragment scFv76
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin, ...
Authors:Chaves-Sanjuan, A, Bolognesi, M.
Deposit date:2022-03-28
Release date:2022-10-12
Last modified:2023-02-08
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Spike mutation resilient scFv76 antibody counteracts SARS-CoV-2 lung damage upon aerosol delivery.
Mol.Ther., 31, 2022
11BG
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BU of 11bg by Molmil
A POTENTIAL ALLOSTERIC SUBSITE GENERATED BY DOMAIN SWAPPING IN BOVINE SEMINAL RIBONUCLEASE
Descriptor: PROTEIN (BOVINE SEMINAL RIBONUCLEASE), SULFATE ION, URIDYLYL-2'-5'-PHOSPHO-GUANOSINE
Authors:Vitagliano, L, Adinolfi, S, Sica, F, Merlino, A, Zagari, A, Mazzarella, L.
Deposit date:1999-03-11
Release date:1999-11-05
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A potential allosteric subsite generated by domain swapping in bovine seminal ribonuclease.
J.Mol.Biol., 293, 1999
2PEG
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BU of 2peg by Molmil
Crystal structure of Trematomus bernacchii hemoglobin in a partial hemichrome state
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
Authors:Vergara, A, Franzese, M, Merlino, A, Vitagliano, L, Mazzarella, L.
Deposit date:2007-04-03
Release date:2007-07-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Structural characterization of ferric hemoglobins from three antarctic fish species of the suborder notothenioidei.
Biophys.J., 93, 2007
2H8D
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BU of 2h8d by Molmil
Crystal structure of deoxy hemoglobin from Trematomus bernacchii at pH 8.4
Descriptor: Hemoglobin alpha subunit, Hemoglobin beta subunit, POTASSIUM ION, ...
Authors:Mazzarella, L, Vergara, A, Vitagliano, L, Merlino, A, Bonomi, G, Scala, S, Verde, C, di Prisco, G.
Deposit date:2006-06-07
Release date:2006-08-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:High resolution crystal structure of deoxy hemoglobin from Trematomus bernacchii at different pH values: The role of histidine residues in modulating the strength of the root effect.
Proteins, 65, 2006
2H8F
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BU of 2h8f by Molmil
Crystal structure of deoxy hemoglobin from Trematomus bernacchii at pH 6.2
Descriptor: Hemoglobin alpha subunit, Hemoglobin beta subunit, PROTOPORPHYRIN IX CONTAINING FE
Authors:Mazzarella, L, Vergara, A, Vitagliano, L, Merlino, A, Bonomi, G, Scala, S, Verde, C, di Prisco, G.
Deposit date:2006-06-07
Release date:2006-08-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:High resolution crystal structure of deoxy hemoglobin from Trematomus bernacchii at different pH values: The role of histidine residues in modulating the strength of the root effect.
Proteins, 65, 2006
1TQ9
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BU of 1tq9 by Molmil
Non-covalent swapped dimer of Bovine Seminal Ribonuclease in complex with 2'-DEOXYCYTIDINE-2'-DEOXYADENOSINE-3',5'-MONOPHOSPHATE
Descriptor: 2'-DEOXYCYTIDINE-2'-DEOXYADENOSINE-3',5'-MONOPHOSPHATE, Ribonuclease, seminal
Authors:Sica, F, Di Fiore, A, Merlino, A, Mazzarella, L.
Deposit date:2004-06-17
Release date:2004-09-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and Stability of the Non-covalent Swapped Dimer of Bovine Seminal Ribonuclease: AN ENZYME TAILORED TO EVADE RIBONUCLEASE PROTEIN INHIBITOR
J.Biol.Chem., 279, 2004
1Y92
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BU of 1y92 by Molmil
Crystal structure of the P19A/N67D Variant Of Bovine seminal Ribonuclease
Descriptor: Seminal ribonuclease
Authors:Picone, D, Di Fiore, A, Ercole, C, Franzese, M, Sica, F, Tomaselli, S, Mazzarella, L.
Deposit date:2004-12-14
Release date:2004-12-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Role of the Hinge Loop in Domain Swapping: THE SPECIAL CASE OF BOVINE SEMINAL RIBONUCLEASE.
J.Biol.Chem., 280, 2005
1Y94
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BU of 1y94 by Molmil
Crystal structure of the G16S/N17T/P19A/S20A/N67D Variant Of Bovine seminal Ribonuclease
Descriptor: Seminal ribonuclease
Authors:Picone, D, Di Fiore, A, Ercole, C, Franzese, M, Sica, F, Tomaselli, S, Mazzarella, L.
Deposit date:2004-12-14
Release date:2004-12-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Role of the Hinge Loop in Domain Swapping: THE SPECIAL CASE OF BOVINE SEMINAL RIBONUCLEASE.
J.Biol.Chem., 280, 2005
1YV4
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BU of 1yv4 by Molmil
X-ray structure of M23L onconase at 100K
Descriptor: P-30 protein, SULFATE ION
Authors:Merlino, A, Mazzarella, L, Carannante, A, Di Fiore, A, Di Donato, A, Notomista, E, Sica, F.
Deposit date:2005-02-15
Release date:2005-03-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:The Importance of Dynamic Effects on the Enzyme Activity: X-RAY STRUCTURE AND MOLECULAR DYNAMICS OF ONCONASE MUTANTS
J.Biol.Chem., 280, 2005
1YV7
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BU of 1yv7 by Molmil
X-ray structure of (C87S,des103-104) onconase
Descriptor: P-30 protein, SULFATE ION
Authors:Merlino, A, Mazzarella, L, Carannante, A, Di Fiore, A, Di Donato, A, Notomista, E, Sica, F.
Deposit date:2005-02-15
Release date:2005-03-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Importance of Dynamic Effects on the Enzyme Activity: X-RAY STRUCTURE AND MOLECULAR DYNAMICS OF ONCONASE MUTANTS
J.Biol.Chem., 280, 2005
1YV6
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BU of 1yv6 by Molmil
X-ray structure of M23L onconase at 298K
Descriptor: P-30 protein, SULFATE ION
Authors:Merlino, A, Mazzarella, L, Carannante, A, Di Fiore, A, Di Donato, A, Notomista, E, Sica, F.
Deposit date:2005-02-15
Release date:2005-03-01
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:The Importance of Dynamic Effects on the Enzyme Activity: X-RAY STRUCTURE AND MOLECULAR DYNAMICS OF ONCONASE MUTANTS
J.Biol.Chem., 280, 2005
3BCP
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BU of 3bcp by Molmil
Crystal Structure of The Swapped non covalent form of P19A/L28Q/N67D BS-RNase
Descriptor: Seminal ribonuclease
Authors:Merlino, A, Ercole, C, Picone, D, Pizzo, E, Mazzarella, L, Sica, F.
Deposit date:2007-11-13
Release date:2008-02-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:The buried diversity of bovine seminal ribonuclease: shape and cytotoxicity of the swapped non-covalent form of the enzyme
J.Mol.Biol., 376, 2008
3BCM
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BU of 3bcm by Molmil
Crystal Structure of The Unswapped Form of P19A/L28Q/N67D BS-RNase
Descriptor: PHOSPHATE ION, Seminal ribonuclease
Authors:Merlino, A, Ercole, C, Picone, D, Pizzo, E, Mazzarella, L, Sica, F.
Deposit date:2007-11-13
Release date:2008-02-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The buried diversity of bovine seminal ribonuclease: shape and cytotoxicity of the swapped non-covalent form of the enzyme
J.Mol.Biol., 376, 2008
3BCO
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BU of 3bco by Molmil
Crystal Structure of The Swapped FOrm of P19A/L28Q/N67D BS-RNase
Descriptor: Seminal ribonuclease
Authors:Merlino, A, Ercole, C, Picone, D, Pizzo, E, Mazzarella, L, Sica, F.
Deposit date:2007-11-13
Release date:2008-02-12
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The buried diversity of bovine seminal ribonuclease: shape and cytotoxicity of the swapped non-covalent form of the enzyme
J.Mol.Biol., 376, 2008
1JVV
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BU of 1jvv by Molmil
CRYSTAL STRUCTURE OF RIBONUCLEASE A (RETRO-SOAKED FORM)
Descriptor: RIBONUCLEASE A
Authors:Vitagliano, L, Merlino, A, Zagari, A, Mazzarella, L.
Deposit date:2001-08-31
Release date:2002-06-05
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Reversible Substrate-Induced Domain Motions in Ribonuclease A
Proteins, 46, 2002
1JVT
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BU of 1jvt by Molmil
CRYSTAL STRUCTURE OF RIBONUCLEASE A (LIGAND-FREE FORM)
Descriptor: RIBONUCLEASE A
Authors:Vitagliano, L, Merlino, A, Zagari, A, Mazzarella, L.
Deposit date:2001-08-31
Release date:2002-06-05
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Reversible Substrate-Induced Domain Motions in Ribonuclease A
Proteins, 46, 2002
1JVU
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BU of 1jvu by Molmil
CRYSTAL STRUCTURE OF RIBONUCLEASE A (COMPLEXED FORM)
Descriptor: CYTIDINE-2'-MONOPHOSPHATE, RIBONUCLEASE A
Authors:Vitagliano, L, Merlino, A, Zagari, A, Mazzarella, L.
Deposit date:2001-08-31
Release date:2002-06-05
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Reversible Substrate-Induced Domain Motions in Ribonuclease A
Proteins, 46, 2002
3D1K
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BU of 3d1k by Molmil
R/T intermediate quaternary structure of an antarctic fish hemoglobin in an alpha(CO)-beta(pentacoordinate) state
Descriptor: ACETYL GROUP, CARBON MONOXIDE, Hemoglobin subunit alpha-1, ...
Authors:Vitagliano, L, Vergara, A, Bonomi, G, Merlino, A, Mazzarella, L.
Deposit date:2008-05-06
Release date:2008-08-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Spectroscopic and crystallographic characterization of a tetrameric hemoglobin oxidation reveals structural features of the functional intermediate relaxed/tense state.
J.Am.Chem.Soc., 130, 2008

 

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