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4RGF
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BU of 4rgf by Molmil
Crystal structure of the in-line aligned env22 twister ribozyme soaked with Mn2+
Descriptor: MAGNESIUM ION, MANGANESE (II) ION, POTASSIUM ION, ...
Authors:Ren, A, Rajashankar, K.R, Simanshu, D, Patel, D.
Deposit date:2014-09-30
Release date:2014-12-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.2008 Å)
Cite:In-line alignment and Mg(2+) coordination at the cleavage site of the env22 twister ribozyme.
Nat Commun, 5, 2014
4RGE
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BU of 4rge by Molmil
Crystal structure of the in-line aligned env22 twister ribozyme
Descriptor: MAGNESIUM ION, env22 twister ribozyme
Authors:Ren, A, Rajashankar, K.R, Simanshu, D, Patel, D.
Deposit date:2014-09-30
Release date:2014-12-03
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:In-line alignment and Mg(2+) coordination at the cleavage site of the env22 twister ribozyme.
Nat Commun, 5, 2014
5K7E
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BU of 5k7e by Molmil
The structure of pistol ribozyme, soaked with Mn2+
Descriptor: DNA/RNA 11-MER, MANGANESE (II) ION, RNA 47-MER
Authors:Ren, A, Patel, D.
Deposit date:2016-05-26
Release date:2016-07-13
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.27 Å)
Cite:Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
5DDP
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BU of 5ddp by Molmil
L-glutamine riboswitch bound with L-glutamine
Descriptor: GLUTAMINE, MAGNESIUM ION, RNA (61-MER), ...
Authors:Ren, A, Patel, D.J.
Deposit date:2015-08-25
Release date:2015-12-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.302 Å)
Cite:Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch.
Cell Rep, 13, 2015
5DDO
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BU of 5ddo by Molmil
Structural and Dynamic Basis for Low Affinity-High Selectivity Binding of L-glutamine by the Gln-riboswitch
Descriptor: L-glutamine riboswitch (58-MER), U1 small nuclear ribonucleoprotein A
Authors:Ren, A, Patel, D.
Deposit date:2015-08-25
Release date:2015-12-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch.
Cell Rep, 13, 2015
5DDQ
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BU of 5ddq by Molmil
L-glutamine riboswitch bound with L-glutamine soaked with Mn2+
Descriptor: GLUTAMINE, L-glutamine riboswitch RNA (61-MER), MAGNESIUM ION, ...
Authors:Ren, A, Patel, D.J.
Deposit date:2015-08-25
Release date:2015-12-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch.
Cell Rep, 13, 2015
5DDR
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BU of 5ddr by Molmil
L-glutamine riboswitch bound with L-glutamine soaked with Cs+
Descriptor: CESIUM ION, GLUTAMINE, L-glutamine riboswitch RNA (61-MER), ...
Authors:Ren, A, Patel, D.J.
Deposit date:2015-08-25
Release date:2015-12-23
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.605 Å)
Cite:Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch.
Cell Rep, 13, 2015
4ZNP
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BU of 4znp by Molmil
The structure of A pfI Riboswitch Bound to ZMP
Descriptor: AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE, MAGNESIUM ION, pfI Riboswitch
Authors:Ren, A, Patel, D.J, Rajashankar, R.K.
Deposit date:2015-05-05
Release date:2015-08-26
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Global RNA Fold and Molecular Recognition for a pfl Riboswitch Bound to ZMP, a Master Regulator of One-Carbon Metabolism.
Structure, 23, 2015
5K7C
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BU of 5k7c by Molmil
The native structure of native pistol ribozyme
Descriptor: DNA/RNA 11-MER, MAGNESIUM ION, RNA 47-MER
Authors:Ren, A, Patel, D.
Deposit date:2016-05-26
Release date:2016-07-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
5K7D
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BU of 5k7d by Molmil
The structure of native pistol ribozyme, bound to Iridium
Descriptor: DNA/RNA 11-MER, IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ...
Authors:Ren, A, Patel, D.
Deposit date:2016-05-26
Release date:2016-07-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.68 Å)
Cite:Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage.
Nat.Chem.Biol., 12, 2016
6LAU
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BU of 6lau by Molmil
the wildtype SAM-VI riboswitch bound to SAH
Descriptor: CESIUM ION, GUANOSINE-5'-TRIPHOSPHATE, RNA (54-MER), ...
Authors:Ren, A, Sun, A.
Deposit date:2019-11-13
Release date:2020-01-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (3.109 Å)
Cite:SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
6LAZ
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BU of 6laz by Molmil
the wildtype SAM-VI riboswitch bound to a N-mustard SAM analog M1
Descriptor: (2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(2-hydroxyethyl)amino]-2-azaniumyl-butanoate, MAGNESIUM ION, RNA (55-MER), ...
Authors:Ren, A, Sun, A.
Deposit date:2019-11-13
Release date:2020-01-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
6LAS
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BU of 6las by Molmil
the wildtype SAM-VI riboswitch bound to SAM
Descriptor: RNA (55-MER), S-ADENOSYLMETHIONINE, U1 small nuclear ribonucleoprotein A
Authors:Ren, A, Sun, A.
Deposit date:2019-11-13
Release date:2020-01-01
Method:X-RAY DIFFRACTION (2.708 Å)
Cite:SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
4X0G
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BU of 4x0g by Molmil
Structure of Bsg25A binding with DNA
Descriptor: ACETATE ION, Blastoderm-specific gene 25A, DNA (5'-D(*GP*TP*TP*CP*CP*AP*AP*TP*TP*GP*GP*AP*A)-3')
Authors:Ren, A.
Deposit date:2014-11-21
Release date:2015-01-21
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.2065 Å)
Cite:Common and distinct DNA-binding and regulatory activities of the BEN-solo transcription factor family.
Genes Dev., 29, 2015
6JQ5
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BU of 6jq5 by Molmil
The structure of Hatchet Ribozyme
Descriptor: MAGNESIUM ION, RNA (82-MER)
Authors:Ren, A, Zheng, L.
Deposit date:2019-03-29
Release date:2019-06-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.059 Å)
Cite:Hatchet ribozyme structure and implications for cleavage mechanism.
Proc.Natl.Acad.Sci.USA, 116, 2019
6JQ6
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BU of 6jq6 by Molmil
Hatchet Ribozyme Structure soaking with Ir(NH3)6+
Descriptor: IRIDIUM HEXAMMINE ION, RNA (81-MER)
Authors:Ren, A, Zheng, L.
Deposit date:2019-03-29
Release date:2019-06-12
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.626 Å)
Cite:Hatchet ribozyme structure and implications for cleavage mechanism.
Proc.Natl.Acad.Sci.USA, 116, 2019
4IX7
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BU of 4ix7 by Molmil
Crystal Structure of the insv-BEN domain complexed to its DNA target site
Descriptor: 5'-D(*GP*TP*TP*CP*CP*AP*AP*TP*TP*GP*GP*AP*A)-3', RE55538p
Authors:Ren, A, Serganov, A, Patel, D.J.
Deposit date:2013-01-24
Release date:2013-03-20
Last modified:2013-04-03
Method:X-RAY DIFFRACTION (1.581 Å)
Cite:The BEN domain is a novel sequence-specific DNA-binding domain conserved in neural transcriptional repressors.
Genes Dev., 27, 2013
5DUN
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BU of 5dun by Molmil
The crystal structure of OMe substituted twister ribozyme
Descriptor: MAGNESIUM ION, POTASSIUM ION, RNA (54-MER)
Authors:Ren, A, Patel, D.J, Micura, R, Rajashankar, K.R.
Deposit date:2015-09-19
Release date:2015-10-28
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:A Mini-Twister Variant and Impact of Residues/Cations on the Phosphodiester Cleavage of this Ribozyme Class.
Angew.Chem.Int.Ed.Engl., 54, 2015
6LAX
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BU of 6lax by Molmil
the mutant SAM-VI riboswitch (U6C) bound to SAM
Descriptor: RNA (55-MER), S-ADENOSYLMETHIONINE, U1 small nuclear ribonucleoprotein A
Authors:Sun, A, Ren, A.
Deposit date:2019-11-13
Release date:2020-01-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:SAM-VI riboswitch structure and signature for ligand discrimination.
Nat Commun, 10, 2019
7W27
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BU of 7w27 by Molmil
Crystal structure of BEND3-BEN4-DNA complex
Descriptor: BEN domain-containing protein 3, DNA (5'-D(P*GP*GP*AP*CP*CP*CP*AP*CP*GP*CP*AP*GP*C)-3'), DNA (5'-D(P*GP*GP*CP*TP*GP*CP*GP*TP*GP*GP*GP*TP*C)-3')
Authors:Zheng, L, Ren, A.
Deposit date:2021-11-22
Release date:2022-02-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Distinct structural bases for sequence-specific DNA binding by mammalian BEN domain proteins.
Genes Dev., 36, 2022
5Y87
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BU of 5y87 by Molmil
Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme
Descriptor: DNA/RNA (50-MER), MANGANESE (II) ION, RNA (5'-R(P*AP*CP*CP*CP*GP*CP*AP*AP*GP*GP*CP*CP*GP*AP*CP*GP*GP*C)-3')
Authors:Zheng, L, Micura, R.L, Ren, A.
Deposit date:2017-08-19
Release date:2017-11-22
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.132 Å)
Cite:Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme
Nat Commun, 8, 2017
5Y85
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BU of 5y85 by Molmil
Structure-based Insights into Self-Cleavage by a Four-way Junctional Twister-Sister Ribozyme
Descriptor: DNA/RNA (50-MER), MAGNESIUM ION, RNA (5'-R(P*AP*CP*CP*CP*GP*CP*AP*AP*GP*GP*CP*CP*GP*AP*CP*GP*GP*C)-3')
Authors:Zheng, L, Micura, R.L, Ren, A.
Deposit date:2017-08-18
Release date:2017-11-22
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structure-based insights into self-cleavage by a four-way junctional twister-sister ribozyme
Nat Commun, 8, 2017
4QLN
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BU of 4qln by Molmil
structure of ydao riboswitch binding with c-di-dAMP
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, MAGNESIUM ION, RNA (117-MER)
Authors:Ren, A.M, Patel, D.J.
Deposit date:2014-06-12
Release date:2014-08-13
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:c-di-AMP binds the ydaO riboswitch in two pseudo-symmetry-related pockets.
Nat.Chem.Biol., 10, 2014
4YB0
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BU of 4yb0 by Molmil
3',3'-cGAMP riboswitch bound with c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ren, A.M, Patel, D.J, Rajashankar, R.K.
Deposit date:2015-02-18
Release date:2015-04-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.121 Å)
Cite:Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch.
Cell Rep, 11, 2015
4YAZ
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BU of 4yaz by Molmil
3',3'-cGAMP riboswitch bound with 3',3'-cGAMP
Descriptor: 2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Ren, A.M, Patel, D.J, Rajashankar, R.K.
Deposit date:2015-02-18
Release date:2015-04-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch.
Cell Rep, 11, 2015

 

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