Author results

3QF6
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NEUTRON STRUCTURE OF TYPE-III ANTIFREEZE PROTEIN ALLOWS THE RECONSTRUCTION OF AFP-ICE INTERFACE
Descriptor:Type-3 ice-structuring protein HPLC 12
Authors:Howard, E.I., Blakeley, M.P., Haertlein, M., Petit-Haertlein, I., Mitschler, A., Fisher, S.J., Cousido-Siah, A., Salvay, A.G., Popov, A., Muller-Dieckmann, C., Petrova, T., Podjarny, A.
Deposit date:2011-01-21
Release date:2011-06-22
Last modified:2018-03-28
Method:NEUTRON DIFFRACTION (1.85 Å)
Cite:Neutron structure of type-III antifreeze protein allows the reconstruction of AFP-ice interface.
J.Mol.Recognit., 24, 2011
4NY6
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NEUTRON STRUCTURE OF LEUCINE AND VALINE METHYL PROTONATED TYPE III ANTIFREEZE
Descriptor:Type-3 ice-structuring protein HPLC 12
Authors:Fisher, S.J., Blakeley, M.P., Howard, E.I., Petite-Haertlein, I., Haertlein, M., Mitschler, A., Cousido-Siah, A., Salvaya, A.G., Popov, A., Muller-Dieckmann, C., Petrova, T., Podjarny, A.D.
Deposit date:2013-12-10
Release date:2014-12-24
Last modified:2018-06-13
Method:NEUTRON DIFFRACTION (1.05 Å), X-RAY DIFFRACTION
Cite:Perdeuteration: improved visualization of solvent structure in neutron macromolecular crystallography.
Acta Crystallogr.,Sect.D, 70, 2014
4XA7
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SOLUBLE PART OF HOLO NQRC FROM V. HARVEYI
Descriptor:Na(+)-translocating NADH-quinone reductase subunit C, FLAVIN MONONUCLEOTIDE, CHLORIDE ION
Authors:Borshchevskiy, V., Round, E., Bertsova, Y., Polovinkin, V., Gushchin, I., Mishin, A., Kovalev, K., Kachalova, G., Popov, A., Bogachev, A., Gordeliy, V.
Deposit date:2014-12-12
Release date:2015-03-18
Last modified:2018-01-17
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structural and Functional Investigation of Flavin Binding Center of the NqrC Subunit of Sodium-Translocating NADH:Quinone Oxidoreductase from Vibrio harveyi.
Plos One, 10, 2015
2B97
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ULTRA-HIGH RESOLUTION STRUCTURE OF HYDROPHOBIN HFBII
Descriptor:Hydrophobin II, MANGANESE (II) ION
Authors:Hakanpaa, J., Linder, M., Popov, A., Schmidt, A., Rouvinen, J.
Deposit date:2005-10-11
Release date:2006-03-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (0.75 Å)
Cite:Hydrophobin HFBII in detail: ultrahigh-resolution structure at 0.75 A.
Acta Crystallogr.,Sect.D, 62, 2006
3RJ5
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STRUCTURE OF ALCOHOL DEHYDROGENASE FROM DROSOPHILA LEBANONESIS T114V MUTANT COMPLEXED WITH NAD+
Descriptor:Alcohol dehydrogenase, ACETIC ACID, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Morgunova, E., Wuxiuer, Y., Cols, N., Popov, A., Sylte, I., Karshikoff, A., Gonzales-Duarte, R., Ladenstein, R., Winberg, J.O.
Deposit date:2011-04-15
Release date:2012-05-02
Last modified:2012-08-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:An intact eight-membered water chain in drosophilid alcohol dehydrogenases is essential for optimal enzyme activity.
Febs J., 279, 2012
3RJ9
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STRUCTURE OF ALCOHOL DEHYDROGENASE FROM DROSOPHILA LEBANONESIS T114V MUTANT COMPLEXED WITH NAD+
Descriptor:Alcohol dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Morgunova, E., Wuxiuer, Y., Cols, N., Popov, A., Sylte, I., Karshikoff, A., Gonzales-Duarte, R., Ladenstein, R., Winberg, J.O.
Deposit date:2011-04-15
Release date:2012-05-02
Last modified:2012-08-08
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:An intact eight-membered water chain in drosophilid alcohol dehydrogenases is essential for optimal enzyme activity.
Febs J., 279, 2012
4OV0
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STRUCTURE OF BACTERIORHDOPSIN TRANSFERRED FROM AMPHIPOL A8-35 TO A LIPIDIC MESOPHASE
Descriptor:Bacteriorhodopsin, RETINAL
Authors:Polovinkin, V., Gushchin, I., Sintsov, M., Round, E., Balandin, T., Chervakov, P., Schevchenko, V., Utrobin, P., Popov, A., Borshchevskiy, V., Mishin, A., Kuklin, A., Willbold, D., Popot, J.L., Gordeliy, V.
Deposit date:2014-02-19
Release date:2014-10-01
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:High-resolution structure of a membrane protein transferred from amphipol to a lipidic mesophase.
J.Membr.Biol., 247, 2014
4V7G
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CRYSTAL STRUCTURE OF LUMAZINE SYNTHASE FROM BACILLUS ANTHRACIS
Descriptor:6,7-dimethyl-8-ribityllumazine synthase, PHOSPHATE ION
Authors:Morgunova, E., Illarionov, B., Saller, S., Popov, A., Sambaiah, T., Bacher, A., Cushman, M., Fischer, M., Ladenstein, R.
Deposit date:2009-09-16
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural study and thermodynamic characterization of inhibitor binding to lumazine synthase from Bacillus anthracis.
Acta Crystallogr.,Sect.D, 66, 2010
4XRM
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HOMODIMER OF TALE TYPE HOMEOBOX TRANSCRIPTION FACTOR MEIS1 COMPLEXES WITH SPECIFIC DNA
Descriptor:DNA (5'-D(P*AP*GP*CP*TP*GP*AP*CP*AP*GP*CP*TP*GP*TP*CP*AP*AP*G)-3'), DNA (5'-D(P*TP*CP*TP*TP*GP*AP*CP*AP*GP*CP*TP*GP*TP*CP*AP*GP*C)-3'), Homeobox protein Meis2, ...
Authors:Morgunova, E., Jorma, A., Yin, Y., Nitta, K.R., Dave, K., Enge, M., Kivioja, T., Popov, A., Taipale, J.
Deposit date:2015-01-21
Release date:2015-11-04
Last modified:2015-12-02
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:DNA-dependent formation of transcription factor pairs alters their binding specificity.
Nature, 527, 2015
4XRS
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HETERODIMERIC COMPLEX OF TRANSCRIPTION FACTORS MEIS1 AND DLX3 ON SPECIFIC DNA
Descriptor:DNA (5'-D(P*CP*AP*AP*TP*TP*AP*TP*CP*CP*TP*GP*TP*CP*AP*A)-3'), DNA (5'-D(P*AP*CP*AP*AP*TP*TP*AP*TP*CP*CP*TP*GP*TP*CP*AP*AP*C)-3'), DNA (5'-D(P*GP*TP*TP*GP*AP*CP*AP*GP*GP*AP*TP*AP*AP*TP*TP*GP*TP*T)-3'), ...
Authors:Jorma, A., Yin, Y., Nitta, K.R., Dave, K., Enge, M., Kivioja, T., Popov, A., Morgunova, E., Taipale, J.
Deposit date:2015-01-21
Release date:2015-11-04
Last modified:2019-04-03
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:DNA-dependent formation of transcription factor pairs alters their binding specificity.
Nature, 527, 2015
4YO2
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STRUCTURE OF E2F8, AN ATYPICAL MEMBER OF E2F FAMILY OF TRANSCRIPTION FACTORS
Descriptor:Transcription factor E2F8, DNA (5'-D(P*TP*TP*TP*TP*CP*CP*CP*GP*CP*CP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*GP*GP*CP*GP*GP*GP*AP*AP*AP*A)-3')
Authors:Morgunova, E., Yin, Y., Jolma, A., Dave, K., Schmierer, B., Popov, A., Eremina, N., Nilsson, L., Taipale, J.
Deposit date:2015-03-11
Release date:2015-12-09
Last modified:2015-12-16
Method:X-RAY DIFFRACTION (3.073 Å)
Cite:Structural insights into the DNA-binding specificity of E2F family transcription factors.
Nat Commun, 6, 2015
5BNG
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MONOMER OF TALE TYPE HOMEOBOX TRANSCRIPTION FACTOR MEIS1 COMPLEXES WITH SPECIFIC DNA
Descriptor:Homeobox protein Meis2, DNA (5'-D(P*TP*TP*AP*GP*CP*TP*GP*TP*CP*A)-3'), DNA (5'-D(P*TP*GP*AP*CP*AP*GP*CP*TP*AP*A-3'), ...
Authors:Morgunova, E., Jolma, A., Yin, Y., Nitta, K., Dave, K., Popov, A., Taipale, M., Enge, M., Kivioja, T., Taipale, J.
Deposit date:2015-05-26
Release date:2015-11-04
Last modified:2015-12-02
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:DNA-dependent formation of transcription factor pairs alters their binding specificity.
Nature, 527, 2015
5EDN
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STRUCTURE OF HOXB13-DNA(TCG) COMPLEX
Descriptor:Homeobox protein Hox-B13, DNA (5'-D(P*GP*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*CP*GP*AP*GP*GP*TP*CP*C)-3'), DNA (5'-D(P*GP*GP*AP*CP*CP*TP*CP*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*AP*C)-3'), ...
Authors:Morgunova, E., Yin, Y., Jolma, A., Popov, A., Taipale, J.
Deposit date:2015-10-21
Release date:2016-11-09
Last modified:2018-08-15
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima.
Elife, 7, 2018
5EEA
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STRUCTURE OF HOXB13-DNA(CAA) COMPLEX
Descriptor:DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*TP*TP*GP*GP*GP*TP*CP*C)-3'), DNA (5'-D(P*GP*GP*AP*CP*CP*CP*AP*AP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3'), Homeobox protein Hox-B13
Authors:Morgunova, E., Yin, Y., Jolma, A., Popov, A., Taipale, J.
Deposit date:2015-10-22
Release date:2016-10-26
Last modified:2018-08-15
Method:X-RAY DIFFRACTION (2.195 Å)
Cite:Two distinct DNA sequences recognized by transcription factors represent enthalpy and entropy optima.
Elife, 7, 2018
5EF6
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STRUCTURE OF HOXB13 COMPLEX WITH METHYLATED DNA
Descriptor:Homeobox protein Hox-B13, DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*GP*GP*TP*CP*C)-3'), DNA (5'-D(P*GP*GP*AP*CP*CP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3')
Authors:Morgunova, E., Yin, Y., Jolma, A., Popov, A., Taipale, J.
Deposit date:2015-10-23
Release date:2017-02-08
Last modified:2017-05-17
Method:X-RAY DIFFRACTION (3 Å)
Cite:Impact of cytosine methylation on DNA binding specificities of human transcription factors.
Science, 356, 2017
5EG0
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HOXB13-MEIS1 HETERODIMER BOUND TO DNA
Descriptor:Homeobox protein Meis2, DNA (5'-D(P*GP*TP*TP*GP*AP*CP*AP*GP*TP*TP*TP*TP*AP*CP*GP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*CP*GP*TP*AP*AP*AP*AP*CP*TP*GP*TP*CP*AP*AP*C)-3'), ...
Authors:Morgunova, E., Yin, Y., Jolma, A., Popov, A., Taipale, J.
Deposit date:2015-10-26
Release date:2016-11-09
Method:X-RAY DIFFRACTION (3.101 Å)
Cite:Molecular basis of recognition of two distinct DNA sequences by a single transcription factor
To Be Published
5EGO
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HOXB13-MEIS1 HETERODIMER BOUND TO METHYLATED DNA
Descriptor:Homeobox protein Meis1, DNA (5'-D(P*GP*TP*TP*GP*AP*CP*AP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*TP*GP*TP*CP*AP*AP*C)-3'), ...
Authors:Morgunova, E., Yin, Y., Jolma, A., Popov, A., Taipale, J.
Deposit date:2015-10-27
Release date:2016-11-09
Last modified:2017-05-17
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Impact of cytosine methylation on DNA binding specificities of human transcription factors.
Science, 356, 2017
5IJI
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FRAGMENT OF NITRATE/NITRITE SENSOR HISTIDINE KINASE NARQ (WT) IN SYMMETRIC HOLO STATE
Descriptor:Nitrate/nitrite sensor histidine kinase NarQ, EICOSANE, NITRATE ION
Authors:Gushchin, I., Melnikov, I., Polovinkin, V., Ishchenko, A., Popov, A., Gordeliy, V.
Deposit date:2016-03-02
Release date:2017-05-31
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Mechanism of transmembrane signaling by sensor histidine kinases.
Science, 356, 2017
5JEF
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FRAGMENT OF NITRATE/NITRITE SENSOR HISTIDINE KINASE NARQ (WT) IN ASYMMETRIC HOLO STATE
Descriptor:Nitrate/nitrite sensor protein NarQ, NITRATE ION, EICOSANE
Authors:Gushchin, I., Melnikov, I., Polovinkin, V., Ishchenko, A., Popov, A., Gordeliy, V.
Deposit date:2016-04-18
Release date:2017-05-31
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Mechanism of transmembrane signaling by sensor histidine kinases.
Science, 356, 2017
5JEQ
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FRAGMENT OF NITRATE/NITRITE SENSOR HISTIDINE KINASE NARQ (R50K) IN SYMMETRIC APO STATE
Descriptor:Nitrate/nitrite sensor protein NarQ, PHOSPHATE ION
Authors:Gushchin, I., Melnikov, I., Polovinkin, V., Ishchenko, A., Popov, A., Gordeliy, V.
Deposit date:2016-04-18
Release date:2017-05-31
Last modified:2017-06-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mechanism of transmembrane signaling by sensor histidine kinases.
Science, 356, 2017
5JGP
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CRYSTAL STRUCTURE OF THE NITRATE/NITRITE SENSOR NARQ FRAGMENT BOUND WITH IODIDE IONS
Descriptor:Nitrate/nitrite sensor protein NarQ, NITRATE ION, IODIDE ION
Authors:Melnikov, I., Polovinkin, V., Popov, A., Gordeliy, V.
Deposit date:2016-04-20
Release date:2017-05-31
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Fast iodide-SAD phasing for high-throughput membrane protein structure determination.
Sci Adv, 3, 2017
5JRF
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CRYSTAL STRUCTURE OF THE LIGHT-DRIVEN SODIUM PUMP KR2 BOUND WITH IODIDE IONS
Descriptor:Sodium pumping rhodopsin, EICOSANE, IODIDE ION
Authors:Melnikov, I., Polovinkin, V., Kovalev, K., Shevchenko, V., Gushchin, I., Popov, A., Gordeliy, V.
Deposit date:2016-05-06
Release date:2017-05-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Fast iodide-SAD phasing for high-throughput membrane protein structure determination.
Sci Adv, 3, 2017
5JSI
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STRUCTURE OF MEMBRANE PROTEIN
Descriptor:Bacteriorhodopsin, EICOSANE, IODIDE ION, ...
Authors:Melnikov, I., Polovinkin, V., Kovalev, K., Shevchenko, V., Gushchin, I., Popov, A., Gordeliy, V.
Deposit date:2016-05-08
Release date:2017-05-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Fast iodide-SAD phasing for high-throughput membrane protein structure determination.
Sci Adv, 3, 2017
5JTB
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CRYSTAL STRUCTURE OF THE CHIMERIC PROTEIN OF A2AAR-BRIL WITH BOUND IODIDE IONS
Descriptor:Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a, 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, CHOLESTEROL, ...
Authors:Melnikov, I., Polovinkin, V., Shevtsov, M., Borshchevskiy, V., Cherezov, V., Popov, A., Gordeliy, V.
Deposit date:2016-05-09
Release date:2017-05-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Fast iodide-SAD phasing for high-throughput membrane protein structure determination.
Sci Adv, 3, 2017
5NNX
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TEAD1 BOUND TO DNA
Descriptor:DNA, Transcriptional enhancer factor TEF-1
Authors:Morgunova, E., Jolma, A., Yin, Y., Popov, A., Taipale, J.
Deposit date:2017-04-10
Release date:2017-04-26
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:TEAD1 bound to DNA
To Be Published
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