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5MYJ
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BU of 5myj by Molmil
Structure of 70S ribosome from Lactococcus lactis
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Franken, L.E, Oostergetel, G.T, Pijning, T, Puri, P, Boekema, E.J, Poolman, B, Guskov, A.
Deposit date:2017-01-26
Release date:2017-10-11
Method:ELECTRON MICROSCOPY (5.6 Å)
Cite:A general mechanism of ribosome dimerization revealed by single-particle cryo-electron microscopy.
Nat Commun, 8, 2017
4DVE
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BU of 4dve by Molmil
Crystal structure at 2.1 A of the S-component for biotin from an ECF-type ABC transporter
Descriptor: BIOTIN, Biotin transporter BioY, nonyl beta-D-glucopyranoside
Authors:Berntsson, R.P.-A, ter Beek, J, Majsnerowska, M, Duurkens, R, Puri, P, Poolman, B, Slotboom, D.J.
Deposit date:2012-02-23
Release date:2012-08-29
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structural divergence of paralogous S components from ECF-type ABC transporters.
Proc.Natl.Acad.Sci.USA, 109, 2012
3L6G
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BU of 3l6g by Molmil
Crystal structure of lactococcal OpuAC in its open conformation
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Betaine ABC transporter permease and substrate binding protein
Authors:Berntsson, R.P.A, Wolters, J.C, Gul, N, Karasawa, A, Thunnissen, A.M.W.H, Slotboom, D.J, Poolman, B.
Deposit date:2009-12-23
Release date:2010-05-19
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Ligand binding and crystal structures of the substrate-binding domain of the ABC transporter OpuA.
Plos One, 5, 2010
4LA9
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BU of 4la9 by Molmil
Crystal structure of an empty substrate binding domain 1 (SBD1) OF ABC TRANSPORTER GLNPQ from lactococcus lactis
Descriptor: DI(HYDROXYETHYL)ETHER, Glutamine ABC transporter permease and substrate binding protein protein, PHOSPHATE ION
Authors:Guskov, A, Schuurman-Wolters, G.K, Slotboom, D.J, Poolman, B.
Deposit date:2013-06-19
Release date:2013-09-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Functional Diversity of Tandem Substrate-Binding Domains in ABC Transporters from Pathogenic Bacteria.
Structure, 21, 2013
4ZEF
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BU of 4zef by Molmil
Crystal structure of substrate binding domain 2 (SBD2) OF ABC transporter GLNPQ from Enterococcus faecalis
Descriptor: Amino acid ABC transporter amino acid-binding/permease, GLUTAMINE
Authors:Fulyani, F, Guskov, A, Poolman, B.
Deposit date:2015-04-20
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of substrate binding domain 2 (SBD2) OF ABC transporter GLNPQ from Enterococcus faecalis
To Be Published
4Z7E
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BU of 4z7e by Molmil
Soluble binding domain of Lmo1422 ABC-transporter
Descriptor: DI(HYDROXYETHYL)ETHER, Lmo1422 protein, PENTAETHYLENE GLYCOL, ...
Authors:Ruiz, S.J, Guskov, A, Poolman, B.
Deposit date:2015-04-07
Release date:2016-04-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal Structure of the Substrate-Binding Domain from Listeria monocytogenes Bile-Resistance Determinant BilE
Crystals, 6, 2016
6FXG
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BU of 6fxg by Molmil
Crystal structure of substrate binding domain 1 (SBD1) OF ABC transporter GLNPQ in complex with Asparagine
Descriptor: ASPARAGINE, Amino acid ABC transporter membrane protein PAAT family
Authors:Guskov, A, Schuurman-Wolters, G.K, Poolman, B.
Deposit date:2018-03-09
Release date:2019-03-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of substrate binding domain 1 (SBD1) OF ABC transporter GLNPQ in complex with Asparagine
To Be Published
6H30
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BU of 6h30 by Molmil
The crystal structure of SBD1-SBD2 tandem of GlnPQ transporter
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, DI(HYDROXYETHYL)ETHER, ...
Authors:Schuurman-Wolters, G.K, Guskov, A, Poolman, B.
Deposit date:2018-07-17
Release date:2019-08-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The crystal structure of SBD1-SBD2 tandem of GlnPQ transporter
To Be Published
3FTO
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BU of 3fto by Molmil
Crystal structure of OppA in a open conformation
Descriptor: Oligopeptide-binding protein oppA
Authors:Berntsson, R.P.-A, Oktaviani, N.A, Fusetti, F, Thunnissen, A.-M.W.H, Poolman, B, Slotboom, D.-J.
Deposit date:2009-01-13
Release date:2009-03-31
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Selenomethionine incorporation in proteins expressed in Lactococcus lactis.
Protein Sci., 18, 2009
3L6H
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BU of 3l6h by Molmil
Crystal structure of lactococcal OpuAC in its closed-liganded conformation complexed with glycine betaine
Descriptor: Betaine ABC transporter permease and substrate binding protein, CHLORIDE ION, TRIMETHYL GLYCINE
Authors:Berntsson, R.P.A, Wolters, J.C, Gul, N, Karasawa, A, Thunnissen, A.M.W.H, Slotboom, D.J, Poolman, B.
Deposit date:2009-12-23
Release date:2010-05-19
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ligand binding and crystal structures of the substrate-binding domain of the ABC transporter OpuA.
Plos One, 5, 2010
3RLB
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BU of 3rlb by Molmil
Crystal structure at 2.0 A of the S-component for thiamin from an ECF-type ABC transporter
Descriptor: 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM, ThiT, nonyl beta-D-glucopyranoside
Authors:Erkens, G.B, Berntsson, R.P.-A, Fulyani, F, Majsnerowska, M, Vujicic-Zagar, A, ter Beek, J, Poolman, B, Slotboom, D.J.
Deposit date:2011-04-19
Release date:2011-06-29
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:The structural basis of modularity in ECF-type ABC transporters.
Nat.Struct.Mol.Biol., 18, 2011
3RYB
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BU of 3ryb by Molmil
Lactococcal OppA complexed with SLSQSLSQS
Descriptor: Oligopeptide, Oligopeptide-binding protein oppA
Authors:Berntsson, R.P.-A, Thunnissen, A.-M.W.H, Poolman, B, Slotboom, D.-J.
Deposit date:2011-05-11
Release date:2011-06-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Importance of a Hydrophobic Pocket for Peptide Binding in Lactococcal OppA.
J.Bacteriol., 193, 2011
3RYA
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BU of 3rya by Molmil
Lactococcal OppA complexed with SLSQLSSQS
Descriptor: Oligopeptide, Oligopeptide-binding protein oppA
Authors:Berntsson, R.P.-A, Thunnissen, A.-M.W.H, Poolman, B, Slotboom, D.-J.
Deposit date:2011-05-11
Release date:2011-06-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Importance of a Hydrophobic Pocket for Peptide Binding in Lactococcal OppA.
J.Bacteriol., 193, 2011
7AHD
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BU of 7ahd by Molmil
OpuA (E190Q) occluded
Descriptor: ABC transporter permease subunit, ABC-type proline/glycine betaine transport system ATPase component, ADENOSINE-5'-TRIPHOSPHATE, ...
Authors:Sikkema, H.R, Rheinberger, J, Paulino, C, Poolman, B.
Deposit date:2020-09-24
Release date:2020-11-25
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Gating by ionic strength and safety check by cyclic-di-AMP in the ABC transporter OpuA.
Sci Adv, 6, 2020
7AHH
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BU of 7ahh by Molmil
OpuA inhibited inward-facing, SBD docked
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, ABC transporter permease subunit, ABC-type proline/glycine betaine transport system ATPase component, ...
Authors:Sikkema, H.R, Rheinberger, J, Paulino, C, Poolman, B.
Deposit date:2020-09-24
Release date:2020-11-25
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Gating by ionic strength and safety check by cyclic-di-AMP in the ABC transporter OpuA.
Sci Adv, 6, 2020
7AHE
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BU of 7ahe by Molmil
OpuA inhibited inward facing
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, ABC transporter permease subunit, ABC-type proline/glycine betaine transport system ATPase component
Authors:Sikkema, H.R, Rheinberger, J, Paulino, C, Poolman, B.
Deposit date:2020-09-24
Release date:2020-11-25
Last modified:2020-12-02
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Gating by ionic strength and safety check by cyclic-di-AMP in the ABC transporter OpuA.
Sci Adv, 6, 2020
7AHC
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BU of 7ahc by Molmil
OpuA apo inward-facing
Descriptor: ABC transporter permease subunit, ABC-type proline/glycine betaine transport system ATPase component
Authors:Sikkema, H.R, Rheinberger, J, Paulino, C, Poolman, B.
Deposit date:2020-09-24
Release date:2020-11-25
Last modified:2020-12-02
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Gating by ionic strength and safety check by cyclic-di-AMP in the ABC transporter OpuA.
Sci Adv, 6, 2020
3DRG
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BU of 3drg by Molmil
Lactococcal OppA complexed with bradykinin in the closed conformation
Descriptor: Bradykinin, CHLORIDE ION, Oligopeptide-binding protein oppA
Authors:Berntsson, R.P.-A, Doeven, M.K, Duurkens, R.H, Sengupta, D, Marrink, S.-J, Thunnissen, A.-M, Poolman, B, Slotboom, D.-J.
Deposit date:2008-07-11
Release date:2009-03-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structural basis for peptide selection by the transport receptor OppA
Embo J., 28, 2009
3DRK
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BU of 3drk by Molmil
Crystal structure of Lactococcal OppA co-crystallized with Neuropeptide S in an open conformation
Descriptor: Neuropeptide S, Oligopeptide-binding protein oppA
Authors:Berntsson, R.P.-A, Doeven, M.K, Duurkens, R.H, Sengupta, D, Marrink, S.-J, Thunnissen, A.-M, Poolman, B, Slotboom, D.-J.
Deposit date:2008-07-11
Release date:2009-03-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structural basis for peptide selection by the transport receptor OppA
Embo J., 28, 2009
3DRI
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BU of 3dri by Molmil
Crystal structure of Lactococcal OppA co-crystallized with an octamer peptide in an open conformation
Descriptor: Oligopeptide-binding protein oppA, peptide AASASA
Authors:Berntsson, R.P.-A, Doeven, M.K, Duurkens, R.H, Sengupta, D, Marrink, S.-J, Thunnissen, A.-M, Poolman, B, Slotboom, D.-J.
Deposit date:2008-07-11
Release date:2009-03-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structural basis for peptide selection by the transport receptor OppA
Embo J., 28, 2009
3DRJ
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BU of 3drj by Molmil
Crystal structure of Lactococcal OppA co-crystallized with pTH-related peptide in an open conformation
Descriptor: Oligopeptide-binding protein oppA, pTH-related peptide
Authors:Berntsson, R.P.-A, Doeven, M.K, Duurkens, R.H, Sengupta, D, Marrink, S.-J, Thunnissen, A.-M, Poolman, B, Slotboom, D.-J.
Deposit date:2008-07-11
Release date:2009-03-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The structural basis for peptide selection by the transport receptor OppA
Embo J., 28, 2009
3DRH
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BU of 3drh by Molmil
Crystal structure of Lactococcal OppA co-crystallized with Leu-enkephalin in an open conformation
Descriptor: Oligopeptide-binding protein oppA, peptide AAAAAA
Authors:Berntsson, R.P.-A, Doeven, M.K, Duurkens, R.H, Sengupta, D, Marrink, S.-J, Thunnissen, A.-M, Poolman, B, Slotboom, D.-J.
Deposit date:2008-07-11
Release date:2009-03-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structural basis for peptide selection by the transport receptor OppA
Embo J., 28, 2009
3DRF
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BU of 3drf by Molmil
Lactococcal OppA complexed with an endogenous peptide in the closed conformation
Descriptor: Oligopeptide-binding protein oppA, endogenous peptide
Authors:Berntsson, R.P.-A, Doeven, M.K, Duurkens, R.H, Sengupta, D, Marrink, S.-J, Thunnissen, A.-M, Poolman, B, Slotboom, D.-J.
Deposit date:2008-07-11
Release date:2009-03-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The structural basis for peptide selection by the transport receptor OppA
Embo J., 28, 2009
4FAJ
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BU of 4faj by Molmil
Structure and mode of peptide binding of pheromone receptor PrgZ
Descriptor: GLYCEROL, PrgZ, Sex pheromone cCF10, ...
Authors:Berntsson, R.P.-A, Schuurman-Wolters, G.K, Dunny, K, Slotboom, D.J, Poolman, B.
Deposit date:2012-05-22
Release date:2012-09-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure and Mode of Peptide Binding of Pheromone Receptor PrgZ.
J.Biol.Chem., 287, 2012
4G4P
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BU of 4g4p by Molmil
Crystal structure of glutamine-binding protein from Enterococcus faecalis at 1.5 A
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Amino acid ABC transporter, amino acid-binding/permease protein, ...
Authors:Fulyani, F, Guskov, A, Zagar, A.V, Slotboom, D.-J, Poolman, B.
Deposit date:2012-07-16
Release date:2013-07-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Functional Diversity of Tandem Substrate-Binding Domains in ABC Transporters from Pathogenic Bacteria.
Structure, 21, 2013

 

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