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3IB7
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BU of 3ib7 by Molmil
Crystal structure of full length Rv0805
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Podobnik, M, Dermol, U.
Deposit date:2009-07-15
Release date:2009-09-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A mycobacterial cyclic AMP phosphodiesterase that moonlights as a modifier of cell wall permeability
J.Biol.Chem., 284, 2009
3IB8
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BU of 3ib8 by Molmil
Crystal structure of full length Rv0805 in complex with 5'-AMP
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ...
Authors:Podobnik, M, Dermol, U.
Deposit date:2009-07-15
Release date:2009-09-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A mycobacterial cyclic AMP phosphodiesterase that moonlights as a modifier of cell wall permeability
J.Biol.Chem., 284, 2009
5EC5
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BU of 5ec5 by Molmil
Crystal structure of lysenin pore
Descriptor: Lysenin, MERCURIBENZOIC ACID, MERCURY (II) ION
Authors:Podobnik, M, Savory, P, Rojko, N, Kisovec, M, Bruce, M, Jayasinghe, L, Anderluh, G.
Deposit date:2015-10-20
Release date:2016-05-18
Last modified:2016-05-25
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of an invertebrate cytolysin pore reveals unique properties and mechanism of assembly.
Nat Commun, 7, 2016
1EQN
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BU of 1eqn by Molmil
E.COLI PRIMASE CATALYTIC CORE
Descriptor: DNA PRIMASE
Authors:Podobnik, M, McInerney, P, O'Donnell, M, Kuriyan, J.
Deposit date:2000-04-05
Release date:2000-06-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A TOPRIM domain in the crystal structure of the catalytic core of Escherichia coli primase confirms a structural link to DNA topoisomerases.
J.Mol.Biol., 300, 2000
1NJG
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BU of 1njg by Molmil
Nucleotide-free form of an Isolated E. coli Clamp Loader Gamma Subunit
Descriptor: DNA polymerase III subunit gamma, SULFATE ION, ZINC ION
Authors:Podobnik, M, Weitze, T.F, O'Donnell, M, Kuriyan, J.
Deposit date:2002-12-30
Release date:2003-04-01
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Nucleotide-Induced Conformational Changes in an Isolated Escherichia coli DNA Polymerase III Clamp Loader Subunit
Structure, 11, 2003
1NJF
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BU of 1njf by Molmil
Nucleotide bound form of an isolated E. coli clamp loader gamma subunit
Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit gamma, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:Podobnik, M, Weitze, T.F, O'Donnell, M, Kuriyan, J.
Deposit date:2002-12-30
Release date:2003-04-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Nucleotide-Induced Conformational Changes in an Isolated Escherichia coli DNA Polymerase III Clamp Loader Subunit
Structure, 11, 2003
3PBH
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BU of 3pbh by Molmil
REFINED CRYSTAL STRUCTURE OF HUMAN PROCATHEPSIN B AT 2.5 ANGSTROM RESOLUTION
Descriptor: PROCATHEPSIN B
Authors:Podobnik, M, Turk, D, Kuhelj, R, Turk, V.
Deposit date:1997-02-13
Release date:1998-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of the wild-type human procathepsin B at 2.5 A resolution reveals the native active site of a papain-like cysteine protease zymogen.
J.Mol.Biol., 271, 1997
4ONU
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BU of 4onu by Molmil
cAMP-binding acyltransferase from Mycobacterium smegmatis, E234A mutant
Descriptor: Acetyltransferase Pat, CALCIUM ION
Authors:Podobnik, M, Rebolj, K, Visweswariah, S.S.
Deposit date:2014-01-29
Release date:2014-04-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Allostery and Conformational Dynamics in cAMP-binding Acyltransferases.
J.Biol.Chem., 289, 2014
4ORF
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BU of 4orf by Molmil
cAMP-binding acyltransferase from Mycobacterium smegmatis, mutant R95K
Descriptor: Acetyltransferase Pat, CHLORIDE ION
Authors:Podobnik, M, Rebolj, K, Visweswariah, S.S.
Deposit date:2014-02-11
Release date:2014-04-30
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Allostery and Conformational Dynamics in cAMP-binding Acyltransferases.
J.Biol.Chem., 289, 2014
4OLL
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BU of 4oll by Molmil
cAMP-binding acyltransferase from Mycobacterium smegmatis
Descriptor: Acetyltransferase Pat, CALCIUM ION, MERCURY (II) ION
Authors:Podobnik, M, Rebolj, K, Visweswariah, S.S.
Deposit date:2014-01-24
Release date:2014-04-30
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Allostery and Conformational Dynamics in cAMP-binding Acyltransferases.
J.Biol.Chem., 289, 2014
3RL4
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BU of 3rl4 by Molmil
Rat metallophosphodiesterase MPPED2 G252H Mutant
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GUANOSINE-5'-MONOPHOSPHATE, ...
Authors:Podobnik, M, Dermol, U.
Deposit date:2011-04-19
Release date:2011-08-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome.
J.Mol.Biol., 412, 2011
3RL3
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BU of 3rl3 by Molmil
Rat metallophosphodiesterase MPPED2
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GUANOSINE-5'-MONOPHOSPHATE, ...
Authors:Podobnik, M, Dermol, U.
Deposit date:2011-04-19
Release date:2011-08-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome.
J.Mol.Biol., 412, 2011
3RL5
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BU of 3rl5 by Molmil
Rat metallophosphodiesterase MPPED2 H67R Mutant
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Metallophosphoesterase MPPED2, ...
Authors:Podobnik, M, Dermol, U.
Deposit date:2011-04-19
Release date:2011-08-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Unique utilization of a phosphoprotein phosphatase fold by a mammalian phosphodiesterase associated with WAGR syndrome.
J.Mol.Biol., 412, 2011
2PBH
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BU of 2pbh by Molmil
CRYSTAL STRUCTURE OF HUMAN PROCATHEPSIN B AT 3.3 ANGSTROM RESOLUTION
Descriptor: PROCATHEPSIN B
Authors:Podobnik, M, Turk, D, Kuhelj, R, Turk, V.
Deposit date:1997-02-14
Release date:1998-02-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Crystal structures of human procathepsin B at 3.2 and 3.3 Angstroms resolution reveal an interaction motif between a papain-like cysteine protease and its propeptide.
FEBS Lett., 384, 1996
6HXX
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BU of 6hxx by Molmil
Potato virus Y
Descriptor: Coat protein, RNA (5'-R(P*UP*UP*UP*UP*U)-3')
Authors:Podobnik, M, Kezar, A, Novacek, J, Polak, M.
Deposit date:2018-10-18
Release date:2019-08-07
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural basis for the multitasking nature of the potato virus Y coat protein.
Sci Adv, 5, 2019
6HXZ
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BU of 6hxz by Molmil
Virus-like Particles based on Potato Virus Y
Descriptor: Polyprotein
Authors:Podobnik, M, Kezar, A, Novacek, J.
Deposit date:2018-10-18
Release date:2019-08-07
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis for the multitasking nature of the potato virus Y coat protein.
Sci Adv, 5, 2019
5NNW
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BU of 5nnw by Molmil
NLPPya in complex with glucosamine
Descriptor: 2-amino-2-deoxy-beta-D-glucopyranose, 25 kDa protein elicitor, MAGNESIUM ION
Authors:Podobnik, M, Anderluh, G, Lenarcic, T.
Deposit date:2017-04-10
Release date:2017-12-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Eudicot plant-specific sphingolipids determine host selectivity of microbial NLP cytolysins.
Science, 358, 2017
5NO9
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BU of 5no9 by Molmil
NLPPya in complex with mannosamine
Descriptor: 2-amino-2-deoxy-alpha-D-mannopyranose, 25 kDa protein elicitor, MAGNESIUM ION
Authors:Podobnik, M, Anderluh, G, Lenarcic, T.
Deposit date:2017-04-11
Release date:2017-12-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Eudicot plant-specific sphingolipids determine host selectivity of microbial NLP cytolysins.
Science, 358, 2017
6ZC2
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BU of 6zc2 by Molmil
Crystal structure of RahU protein in complex with TRIS molecule
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, RahU protein
Authors:Podobnik, M, Anderluh, G, Lenarcic, T.
Deposit date:2020-06-09
Release date:2021-04-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Crystal structure of RahU, an aegerolysin protein from the human pathogen Pseudomonas aeruginosa, and its interaction with membrane ceramide phosphorylethanolamine.
Sci Rep, 11, 2021
6ZC1
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BU of 6zc1 by Molmil
Crystal structure of RahU protein from Pseudomonas aeruginosa
Descriptor: RahU protein
Authors:Podobnik, M, Anderluh, G, Lenarcic, T.
Deposit date:2020-06-09
Release date:2021-04-07
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.27 Å)
Cite:Crystal structure of RahU, an aegerolysin protein from the human pathogen Pseudomonas aeruginosa, and its interaction with membrane ceramide phosphorylethanolamine.
Sci Rep, 11, 2021
1PBH
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BU of 1pbh by Molmil
CRYSTAL STRUCTURE OF HUMAN RECOMBINANT PROCATHEPSIN B AT 3.2 ANGSTROM RESOLUTION
Descriptor: PROCATHEPSIN B
Authors:Podobnik, M, Turk, D.
Deposit date:1997-02-14
Release date:1998-02-25
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of human procathepsin B at 3.2 and 3.3 Angstroms resolution reveal an interaction motif between a papain-like cysteine protease and its propeptide.
FEBS Lett., 384, 1996
8CQM
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BU of 8cqm by Molmil
Broad-range phospholipase C from Listeria monocytogenes
Descriptor: FE (III) ION, GLYCEROL, Phospholipase C, ...
Authors:Petrisic, N, Podobnik, M.
Deposit date:2023-03-06
Release date:2023-10-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for the unique molecular properties of broad-range phospholipase C from Listeria monocytogenes.
Nat Commun, 14, 2023
7PUD
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BU of 7pud by Molmil
Bryoporin - actinoporin from moss Physcomitrium patens
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Bryoporin, SULFATE ION
Authors:Solinc, G, Anderluh, G, Podobnik, M.
Deposit date:2021-09-29
Release date:2022-09-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Pore-forming moss protein bryoporin is structurally and mechanistically related to actinoporins from evolutionarily distant cnidarians.
J.Biol.Chem., 298, 2022
2HYP
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BU of 2hyp by Molmil
Crystal structure of Rv0805 D66A mutant
Descriptor: BROMIDE ION, CACODYLATE ION, FE (III) ION, ...
Authors:Shenoy, A.R, Capuder, M, Draskovic, P, Lamba, D, Visweswariah, S.S, Podobnik, M.
Deposit date:2006-08-07
Release date:2006-12-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural and Biochemical Analysis of the Rv0805 Cyclic Nucleotide Phosphodiesterase from Mycobacterium tuberculosis.
J.Mol.Biol., 365, 2007
2HYO
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BU of 2hyo by Molmil
Crystal structure of Rv0805 N97A mutant
Descriptor: FE (III) ION, MANGANESE (II) ION, Rv0805N97A
Authors:Shenoy, A.R, Capuder, M, Draskovic, P, Lamba, D, Visweswariah, S.S, Podobnik, M.
Deposit date:2006-08-07
Release date:2006-12-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural and Biochemical Analysis of the Rv0805 Cyclic Nucleotide Phosphodiesterase from Mycobacterium tuberculosis.
J.Mol.Biol., 365, 2007

 

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