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5LSN
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BU of 5lsn by Molmil
SINEB2 element of the long non-coding RNA activator of translation AS Uchl1
Descriptor: RNA (29-MER)
Authors:Podbevsek, P, Plavec, J.
Deposit date:2016-09-05
Release date:2017-09-20
Last modified:2019-05-08
Method:SOLUTION NMR
Cite:Structural determinants of the SINE B2 element embedded in the long non-coding RNA activator of translation AS Uchl1.
Sci Rep, 8, 2018
7A3Y
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BU of 7a3y by Molmil
RNA duplex with a cytosine bulge in complex with berberine
Descriptor: BERBERINE, RNA-A chain A, RNA-A chain B
Authors:Podbevsek, P, Plavec, J.
Deposit date:2020-08-19
Release date:2021-03-10
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Interaction between berberine and RNA for the exploration of phytochemicals role
Nucleic Acids Res., 2021
2KWG
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BU of 2kwg by Molmil
Solution structure of a fully modified 2'-F/2'-OMe siRNA construct
Descriptor: 5'-R(*(GF2)P*(OMG)P*(GF2)P*(OMU)P*(AF2)P*(A2M)P*(AF2)P*(OMU)P*(AF2)P*(OMC)P*(AF2)P*(OMU)P*(UFT)P*(OMC)P*(UFT)P*(OMU)P*(CFZ)P*(A2M)P*(UFT)P*(OMU)P*(UFT))-3', 5'-R(P*(A2M)P*(UFT)P*(OMG)P*(AF2)P*(A2M)P*(GF2)P*(A2M)P*(AF2)P*(OMU)P*(GF2)P*(OMU)P*(AF2)P*(OMU)P*(UFT)P*(OMU)P*(AF2)P*(OMC)P*(CFZ)P*(OMC)P*(UFT)P*(OMU))-3'
Authors:Podbevsek, P, Bhat, B, Plavec, J.
Deposit date:2010-04-09
Release date:2010-07-21
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution-state structure of a fully alternately 2'-F/2'-OMe modified 42-nt dimeric siRNA construct.
Nucleic Acids Res., 38, 2010
7NWD
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BU of 7nwd by Molmil
Three-quartet c-kit2 G-quadruplex stabilized by a pyrene conjugate
Descriptor: POTASSIUM ION, c-kit2_py1
Authors:Peterkova, K, Durnik, I, Marek, R, Plavec, J, Podbevsek, P.
Deposit date:2021-03-16
Release date:2021-08-04
Last modified:2021-10-06
Method:SOLUTION NMR
Cite:c-kit2 G-quadruplex stabilized via a covalent probe: exploring G-quartet asymmetry.
Nucleic Acids Res., 49, 2021
6IA4
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BU of 6ia4 by Molmil
Human telomeric G-quadruplex with 8-oxo-G substitution in the outer G-quartet
Descriptor: hTel-oxoG21
Authors:Bielskute, S, Plavec, J, Podbevsek, P.
Deposit date:2018-11-26
Release date:2019-01-30
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Impact of Oxidative Lesions on the Human Telomeric G-Quadruplex.
J. Am. Chem. Soc., 141, 2019
6IA0
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BU of 6ia0 by Molmil
Human telomeric G-quadruplex with 8-oxo-G substitution in the central G-quartet
Descriptor: hTel-oxoG10
Authors:Bielskute, S, Plavec, J, Podbevsek, P.
Deposit date:2018-11-26
Release date:2019-01-30
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Impact of Oxidative Lesions on the Human Telomeric G-Quadruplex.
J. Am. Chem. Soc., 141, 2019
6ZX7
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BU of 6zx7 by Molmil
Antiparallel basket-type G-quadruplex DNA structure formed in human Bcl-2 promoter
Descriptor: bcl2ex
Authors:Bielskute, S, Plavec, J, Podbevsek, P.
Deposit date:2020-07-29
Release date:2021-03-10
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Oxidative lesions modulate G-quadruplex stability and structure in the human BCL2 promoter.
Nucleic Acids Res., 49, 2021
6ZX6
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BU of 6zx6 by Molmil
Antiparallel basket-type G-quadruplex DNA structure formed in human Bcl-2 promoter containing 8-oxoG
Descriptor: bcl2ex-oxoG19
Authors:Bielskute, S, Plavec, J, Podbevsek, P.
Deposit date:2020-07-29
Release date:2021-03-10
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Oxidative lesions modulate G-quadruplex stability and structure in the human BCL2 promoter.
Nucleic Acids Res., 49, 2021
2LPA
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BU of 2lpa by Molmil
Mutant of the sub-genomic promoter from Brome Mosaic Virus
Descriptor: RNA (5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*UP*CP*UP*UP*C)-3')
Authors:Skov, J.
Deposit date:2012-02-06
Release date:2012-05-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The subgenomic promoter of brome mosaic virus folds into a stem-loop structure capped by a pseudo-triloop that is structurally similar to the triloop of the genomic promoter.
Rna, 18, 2012
2LP9
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BU of 2lp9 by Molmil
Pseudo-triloop from the sub-genomic promoter of Brome Mosaic Virus
Descriptor: RNA (5'-R(*GP*AP*GP*GP*AP*CP*AP*UP*AP*GP*AP*UP*CP*UP*UP*C)-3')
Authors:Skov, J.
Deposit date:2012-02-06
Release date:2012-05-16
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:The subgenomic promoter of brome mosaic virus folds into a stem-loop structure capped by a pseudo-triloop that is structurally similar to the triloop of the genomic promoter.
Rna, 18, 2012

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