Author results

1MJI
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DETAILED ANALYSIS OF RNA-PROTEIN INTERACTIONS WITHIN THE BACTERIAL RIBOSOMAL PROTEIN L5/5S RRNA COMPLEX
Descriptor:5S rRNA fragment, 50S ribosomal protein L5, MAGNESIUM ION, ...
Authors:Perederina, A., Nevskaya, N., Nikonov, O., Nikulin, A., Dumas, P., Yao, M., Tanaka, I., Garber, M., Gongadze, G., Nikonov, S.
Deposit date:2002-08-28
Release date:2003-01-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Detailed analysis of RNA-protein interactions within the bacterial ribosomal protein L5/5S rRNA complex
RNA, 8, 2002
1TJL
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CRYSTAL STRUCTURE OF TRANSCRIPTION FACTOR DKSA FROM E. COLI
Descriptor:DnaK suppressor protein, ZINC ION
Authors:Perederina, A., Svetlov, V., Vassylyeva, M.N., Artsimovitch, I., Yokoyama, S., Vassylyev, D.G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-06-06
Release date:2004-09-07
Last modified:2014-04-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Regulation through the secondary channel--structural framework for ppGpp-DksA synergism during transcription
Cell(Cambridge,Mass.), 118, 2004
3IAB
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CRYSTAL STRUCTURE OF RNASE P /RNASE MRP PROTEINS POP6, POP7 IN A COMPLEX WITH THE P3 DOMAIN OF RNASE MRP RNA
Descriptor:Ribonucleases P/MRP protein subunit POP6, Ribonucleases P/MRP protein subunit POP7, P3 domain of the RNA component of RNase MRP, ...
Authors:Perederina, A., Esakova, O.A., Quan, C., Khanova, E., Krasilnikov, A.S.
Deposit date:2009-07-13
Release date:2010-01-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Eukaryotic ribonucleases P/MRP: the crystal structure of the P3 domain
Embo J., 29, 2010
2A6E
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CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME
Descriptor:DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
Authors:Artsimovitch, I., Vassylyeva, M.N., Svetlov, D., Svetlov, V., Perederina, A., Igarashi, N., Matsugaki, N., Wakatsuki, S., Tahirov, T.H., Vassylyev, D.G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-02
Release date:2005-09-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Allosteric modulation of the RNA polymerase catalytic reaction is an essential component of transcription control by rifamycins.
Cell(Cambridge,Mass.), 122, 2005
2A68
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CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC RIFABUTIN
Descriptor:DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
Authors:Artsimovitch, I., Vassylyeva, M.N., Svetlov, D., Svetlov, V., Perederina, A., Igarashi, N., Matsugaki, N., Wakatsuki, S., Tahirov, T.H., Vassylyev, D.G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-01
Release date:2005-09-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Allosteric modulation of the RNA polymerase catalytic reaction is an essential component of transcription control by rifamycins.
Cell(Cambridge,Mass.), 122, 2005
2A69
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CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC RIFAPENTIN
Descriptor:DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
Authors:Artsimovitch, I., Vassylyeva, M.N., Svetlov, D., Svetlov, V., Perederina, A., Igarashi, N., Matsugaki, N., Wakatsuki, S., Tahirov, T.H., Vassylyev, D.G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-02
Release date:2005-09-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Allosteric modulation of the RNA polymerase catalytic reaction is an essential component of transcription control by rifamycins.
Cell(Cambridge,Mass.), 122, 2005
2A6H
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CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH ANTIBIOTIC STERPTOLYDIGIN
Descriptor:DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
Authors:Temiakov, D., Zenkin, N., Vassylyeva, M.N., Perederina, A., Tahirov, T.H., Savkina, M., Zorov, S., Nikiforov, V., Igarashi, N., Matsugaki, N., Wakatsuki, S., Severinov, K., Vassylyev, D.G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-02
Release date:2005-09-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of transcription inhibition by antibiotic streptolydigin.
Mol.Cell, 19, 2005
2BE5
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CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE HOLOENZYME IN COMPLEX WITH INHIBITOR TAGETITOXIN
Descriptor:DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
Authors:Vassylyev, D.G., Svetlov, V., Vassylyeva, M.N., Perederina, A., Igarashi, N., Matsugaki, N., Wakatsuki, S., Artsimovitch, I., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-10-22
Release date:2005-11-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for transcription inhibition by tagetitoxin
Nat.Struct.Mol.Biol., 12, 2005
2EUL
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STRUCTURE OF THE TRANSCRIPTION FACTOR GFH1.
Descriptor:anti-cleavage anti-GreA transcription factor Gfh1, ZINC ION
Authors:Symersky, J., Perederina, A., Vassylyeva, M.N., Svetlov, V., Artsimovitch, I., Vassylyev, D.G., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-10-28
Release date:2005-11-15
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Regulation through the RNA Polymerase Secondary Channel: STRUCTURAL AND FUNCTIONAL VARIABILITY OF THE COILED-COIL TRANSCRIPTION FACTORS.
J.Biol.Chem., 281, 2006
2ZJS
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CRYSTAL STRUCTURE OF SECYE TRANSLOCON FROM THERMUS THERMOPHILUS WITH A FAB FRAGMENT
Descriptor:Preprotein translocase SecY subunit, Preprotein translocase SecE subunit, Fab56 (heavy chain), ...
Authors:Tsukazaki, T., Mori, H., Fukai, S., Ishitani, R., Perederina, A., Vassylyev, D.G., Ito, K., Nureki, O.
Deposit date:2008-03-08
Release date:2008-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Conformational transition of Sec machinery inferred from bacterial SecYE structures
Nature, 455, 2008
3AQP
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CRYSTAL STRUCTURE OF SECDF, A TRANSLOCON-ASSOCIATED MEMBRANE PROTEIN, FROM THERMUS THRMOPHILUS
Descriptor:Probable SecDF protein-export membrane protein
Authors:Tsukazaki, T., Mori, H., Echizen, Y., Ishitani, R., Fukai, S., Tanaka, T., Perederina, A., Vassylyev, D.G., Kohno, T., Ito, K., Nureki, O.
Deposit date:2010-11-16
Release date:2011-05-18
Last modified:2014-01-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structure and function of a membrane component SecDF that enhances protein export
Nature, 474, 2011
1U1S
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HFQ PROTEIN FROM PSEUDOMONAS AERUGINOSA. LOW-SALT CRYSTALS
Descriptor:Hfq protein
Authors:Nikulin, A.D., Stolboushkina, E.A., Perederina, I., Vassilieva, I.M., Blaesi, U., Moll, I., Kachalova, G., Vassylyev, D., Yokoyama, S., Garber, M., Nikonov, S.V., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-07-16
Release date:2005-01-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure of Pseudomonas aeruginosa Hfq protein.
Acta Crystallogr.,Sect.D, 61, 2005
1U1T
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HFQ PROTEIN FROM PSEUDOMONAS AERUGINOSA. HIGH-SALT CRYSTALS
Descriptor:Hfq protein
Authors:Nikulin, A.D., Stolboushkina, E.A., Perederina, A.A., Vassilieva, I.M., Blaesi, U., Moll, I., Kachalova, G., Yokoyama, S., Vassylyev, D., Garber, M., Nikonov, S.V., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-07-16
Release date:2005-01-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of Pseudomonas aeruginosa Hfq protein.
Acta Crystallogr.,Sect.D, 61, 2005
3AQO
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STRUCTURE AND FUNCTION OF A MEMBRANE COMPONENT SECDF THAT ENHANCES PROTEIN EXPORT
Descriptor:Probable SecDF protein-export membrane protein
Authors:Echizen, Y., Tsukazaki, T., Ishitani, R., Nureki, O.
Deposit date:2010-11-16
Release date:2011-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure and function of a membrane component SecDF that enhances protein export.
Nature, 474, 2011
2O5I
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CRYSTAL STRUCTURE OF THE T. THERMOPHILUS RNA POLYMERASE ELONGATION COMPLEX
Descriptor:5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP*CP*GP*CP*CP*G)-3', 5'-R(P*GP*AP*GP*UP*CP*UP*GP*CP*GP*GP*CP*GP*CP*GP*CP*G)-3', 5'-D(*AP*AP*CP*GP*CP*CP*AP*GP*AP*CP*AP*GP*GP*G)-3', ...
Authors:Vassylyev, D.G., Tahirov, T.H., Vassylyeva, M.N.
Deposit date:2006-12-06
Release date:2007-07-03
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for transcription elongation by bacterial RNA polymerase.
Nature, 448, 2007
2RRN
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SOLUTION STRUCTURE OF SECDF PERIPLASMIC DOMAIN P4
Descriptor:Probable SecDF protein-export membrane protein
Authors:Tanaka, T., Tsukazaki, T., Echizen, Y., Nureki, O., Kohno, T.
Deposit date:2011-01-30
Release date:2011-05-18
Last modified:2011-12-28
Method:SOLUTION NMR
Cite:Structure and function of a membrane component SecDF that enhances protein export
Nature, 474, 2011
2ZQP
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CRYSTAL STRUCTURE OF SECYE TRANSLOCON FROM THERMUS THERMOPHILUS
Descriptor:Preprotein translocase SecY subunit, Preprotein translocase SecE subunit
Authors:Tsukazaki, T., Nureki, O.
Deposit date:2008-08-14
Release date:2008-10-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (6 Å)
Cite:Conformational transition of Sec machinery inferred from bacterial SecYE structures
Nature, 455, 2008
3INZ
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H57T HFQ FROM PSEUDOMONAS AERUGINOSA
Descriptor:Protein hfq, CADMIUM ION, SODIUM ION, ...
Authors:Moskaleva, O., Melnik, B., Gabdulkhakov, A., Garber, M., Nikonov, S., Stolboushkina, E., Nikulin, A.
Deposit date:2009-08-13
Release date:2010-08-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structures of mutant forms of Hfq from Pseudomonas aeruginosa reveal the importance of the conserved His57 for the protein hexamer organization.
Acta Crystallogr.,Sect.F, 66, 2010