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4V4B
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BU of 4v4b by Molmil
Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map.
Descriptor: 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S11, ...
Authors:Spahn, C.M, Gomez-Lorenzo, M.G, Grassucci, R.A, Jorgensen, R, Andersen, G.R, Beckmann, R, Penczek, P.A, Ballesta, J.P.G, Frank, J.
Deposit date:2004-01-06
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (11.7 Å)
Cite:Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation.
Embo J., 23, 2004
6AUI
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BU of 6aui by Molmil
Human ribonucleotide reductase large subunit (alpha) with dATP and CDP
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CYTIDINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Brignole, E.J, Drennan, C.L, Asturias, F.J, Tsai, K.L, Penczek, P.A.
Deposit date:2017-09-01
Release date:2018-04-18
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:3.3- angstrom resolution cryo-EM structure of human ribonucleotide reductase with substrate and allosteric regulators bound.
Elife, 7, 2018
2NOQ
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BU of 2noq by Molmil
Structure of ribosome-bound cricket paralysis virus IRES RNA
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S5, ...
Authors:Schuler, M, Connell, S.R, Lescoute, A, Giesebrecht, J, Dabrowski, M, Schroeer, B, Mielke, T, Penczek, P.A, Westhof, E, Spahn, C.M.T.
Deposit date:2006-10-26
Release date:2006-11-21
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (7.3 Å)
Cite:Structure of the ribosome-bound cricket paralysis virus IRES RNA.
Nat.Struct.Mol.Biol., 13, 2006
4V5N
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BU of 4v5n by Molmil
tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)
Descriptor: 16S RRNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Ratje, A.H, Loerke, J, Mikolajka, A, Bruenner, M, Hildebrand, P.W, Starosta, A.L, Doenhoefer, A, Connell, S.R, Fucini, P, Mielke, T, Whitford, P.C, Onuchic, J.N, Yu, Y, Sanbonmatsu, K.Y, Hartmann, R.K, Penczek, P.A, Wilson, D.N, Spahn, C.M.T.
Deposit date:2010-10-21
Release date:2014-07-09
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (7.6 Å)
Cite:Head Swivel on the Ribosome Facilitates Translocation by Means of Intra-Subunit tRNA Hybrid Sites.
Nature, 468, 2010
5AJ0
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BU of 5aj0 by Molmil
Cryo electron microscopy of actively translating human polysomes (POST state).
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Behrmann, E, Loerke, J, Budkevich, T.V, Yamamoto, K, Schmidt, A, Penczek, P.A, Vos, M.R, Burger, J, Mielke, T, Scheerer, P, Spahn, C.M.T.
Deposit date:2015-02-19
Release date:2015-05-20
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural Snapshots of Actively Translating Human Ribosomes
Cell(Cambridge,Mass.), 161, 2015
4V5M
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BU of 4v5m by Molmil
tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)
Descriptor: 16S RRNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Ratje, A.H, Loerke, J, Mikolajka, A, Bruenner, M, Hildebrand, P.W, Starosta, A.L, Doenhoefer, A, Connell, S.R, Fucini, P, Mielke, T, Whitford, P.C, Onuchic, J.N, Yu, Y, Sanbonmatsu, K.Y, Hartmann, R.K, Penczek, P.A, Wilson, D.N, Spahn, C.M.T.
Deposit date:2010-10-01
Release date:2014-07-09
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Head Swivel on the Ribosome Facilitates Translocation by Means of Intra-Subunit tRNA Hybrid Sites.
Nature, 468, 2010
6GY7
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BU of 6gy7 by Molmil
Crystal structure of XaxB from Xenorhabdus nematophil
Descriptor: XaxB
Authors:Schubert, E, Raunser, S, Vetter, I.R, Prumbaum, D, Penczek, P.A.
Deposit date:2018-06-28
Release date:2018-07-25
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Membrane insertion of alpha-xenorhabdolysin in near-atomic detail.
Elife, 7, 2018
4A7F
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BU of 4a7f by Molmil
Structure of the Actin-Tropomyosin-Myosin Complex (rigor ATM 3)
Descriptor: ACTIN, ALPHA SKELETAL MUSCLE, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Behrmann, E, Mueller, M, Penczek, P.A, Mannherz, H.G, Manstein, D.J, Raunser, S.
Deposit date:2011-11-14
Release date:2012-08-01
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (7.7 Å)
Cite:Structure of the Rigor Actin-Tropomyosin-Myosin Complex.
Cell(Cambridge,Mass.), 150, 2012
4A7L
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BU of 4a7l by Molmil
Structure of the Actin-Tropomyosin-Myosin Complex (rigor ATM 1)
Descriptor: ACTIN, ALPHA SKELETON MUSCLE, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Behrmann, E, Mueller, M, Penczek, P.A, Mannherz, H.G, Manstein, D.J, Raunser, S.
Deposit date:2011-11-14
Release date:2012-08-01
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (8.1 Å)
Cite:Structure of the Rigor Actin-Tropomyosin-Myosin Complex.
Cell(Cambridge,Mass.), 150, 2012
4A7N
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BU of 4a7n by Molmil
Structure of bare F-actin filaments obtained from the same sample as the Actin-Tropomyosin-Myosin Complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, F-ACTIN
Authors:Behrmann, E, Mueller, M, Penczek, P.A, Mannherz, H.G, Manstein, D.J, Raunser, S.
Deposit date:2011-11-14
Release date:2012-08-01
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (8.9 Å)
Cite:Structure of the Rigor Actin-Tropomyosin-Myosin Complex.
Cell(Cambridge,Mass.), 150, 2012
4A7H
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BU of 4a7h by Molmil
Structure of the Actin-Tropomyosin-Myosin Complex (rigor ATM 2)
Descriptor: ACTIN, ALPHA SKELETAL MUSCLE, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:Behrmann, E, Mueller, M, Penczek, P.A, Mannherz, H.G, Manstein, D.J, Raunser, S.
Deposit date:2011-11-14
Release date:2012-08-01
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Structure of the Rigor Actin-Tropomyosin-Myosin Complex.
Cell(Cambridge,Mass.), 150, 2012
3J1Z
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BU of 3j1z by Molmil
Inward-Facing Conformation of the Zinc Transporter YiiP revealed by Cryo-electron Microscopy
Descriptor: Cation efflux family protein
Authors:Coudray, N, Valvo, S, Hu, M, Lasala, R, Kim, C, Vink, M, Zhou, M, Provasi, D, Filizola, M, Tao, J, Fang, J, Penczek, P.A, Ubarretxena-Belandia, I, Stokes, D.L, Transcontinental EM Initiative for Membrane Protein Structure (TEMIMPS)
Deposit date:2012-07-24
Release date:2012-10-10
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (13 Å)
Cite:Inward-facing conformation of the zinc transporter YiiP revealed by cryoelectron microscopy.
Proc.Natl.Acad.Sci.USA, 110, 2013
6I3N
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BU of 6i3n by Molmil
Helical MyD88 death domain filament
Descriptor: Myeloid differentiation primary response protein MyD88
Authors:Moncrieffe, M.C, Bollschweiler, D, Penczek, P.A.P, Gay, N.J.
Deposit date:2018-11-06
Release date:2019-11-20
Last modified:2020-03-11
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:MyD88 Death-Domain Oligomerization Determines Myddosome Architecture: Implications for Toll-like Receptor Signaling.
Structure, 28, 2020
6PU4
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BU of 6pu4 by Molmil
MicroED structure of proteinase K recorded on Falcon III
Descriptor: CALCIUM ION, Proteinase K
Authors:Hattne, J, Martynowycz, M.W, Penzcek, P.A, Gonen, T.
Deposit date:2019-07-17
Release date:2019-08-28
Last modified:2023-10-11
Method:ELECTRON CRYSTALLOGRAPHY (2.1 Å)
Cite:MicroED with the Falcon III direct electron detector.
Iucrj, 6, 2019
6PU5
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BU of 6pu5 by Molmil
MicroED structure of proteinase K recorded on CetaD
Descriptor: CALCIUM ION, Proteinase K
Authors:Hattne, J, Martynowycz, M.W, Penzcek, P.A, Gonen, T.
Deposit date:2019-07-17
Release date:2019-08-28
Last modified:2023-10-11
Method:ELECTRON CRYSTALLOGRAPHY (2.7 Å)
Cite:MicroED with the Falcon III direct electron detector.
Iucrj, 6, 2019
4P4H
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BU of 4p4h by Molmil
Caught-in-action signaling complex of RIG-I 2CARD domain and MAVS CARD domain
Descriptor: Mitochondrial antiviral-signaling protein, Probable ATP-dependent RNA helicase DDX58, Ubiquitin-60S ribosomal protein L40
Authors:Wu, B, Hur, S.
Deposit date:2014-03-12
Release date:2014-07-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Molecular Imprinting as a Signal-Activation Mechanism of the Viral RNA Sensor RIG-I.
Mol.Cell, 55, 2014
3J8A
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BU of 3j8a by Molmil
Structure of the F-actin-tropomyosin complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:von der Ecken, J, Mueller, M, Lehman, W, Manstein, J.M, Penczek, A.P, Raunser, S.
Deposit date:2014-10-08
Release date:2014-12-10
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Structure of the F-actin--tropomyosin complex.
Nature, 519, 2015
3J6J
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BU of 3j6j by Molmil
3.6 Angstrom resolution MAVS filament generated from helical reconstruction
Descriptor: Mitochondrial antiviral-signaling protein
Authors:Wu, B, Peisley, A, Li, Z, Egelman, E, Walz, T, Penczek, P, Hur, S.
Deposit date:2014-03-13
Release date:2014-07-30
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.64 Å)
Cite:Molecular Imprinting as a Signal-Activation Mechanism of the Viral RNA Sensor RIG-I.
Mol.Cell, 55, 2014
4V68
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BU of 4v68 by Molmil
T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Schuette, J.-C, Spahn, C.M.T.
Deposit date:2008-12-11
Release date:2014-07-09
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (6.4 Å)
Cite:GTPase activation of elongation factor EF-Tu by the ribosome during decoding
Embo J., 28, 2009
6GY8
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BU of 6gy8 by Molmil
Crystal structure of XaxA from Xenorhabdus nematophila
Descriptor: XaxA
Authors:Schubert, E, Raunser, S.
Deposit date:2018-06-28
Release date:2018-07-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Membrane insertion of alpha-xenorhabdolysin in near-atomic detail.
Elife, 7, 2018
6GY6
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BU of 6gy6 by Molmil
XaxAB pore complex from Xenorhabdus nematophila
Descriptor: XaxA, XaxB
Authors:Schubert, E, Raunser, S.
Deposit date:2018-06-28
Release date:2018-07-25
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Membrane insertion of alpha-xenorhabdolysin in near-atomic detail.
Elife, 7, 2018
5JQE
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BU of 5jqe by Molmil
Crystal structure of caspase8 tDED
Descriptor: Sugar ABC transporter substrate-binding protein,Caspase-8 chimera
Authors:Fu, T, Li, Y, Lu, A, Wu, H.
Deposit date:2016-05-04
Release date:2016-10-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.157 Å)
Cite:Cryo-EM Structure of Caspase-8 Tandem DED Filament Reveals Assembly and Regulation Mechanisms of the Death-Inducing Signaling Complex.
Mol. Cell, 64, 2016
5L08
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BU of 5l08 by Molmil
Cryo-EM structure of Casp-8 tDED filament
Descriptor: Caspase-8
Authors:Fu, T.M, Li, Y, Lu, A, Wu, H.
Deposit date:2016-07-26
Release date:2016-11-02
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Cryo-EM Structure of Caspase-8 Tandem DED Filament Reveals Assembly and Regulation Mechanisms of the Death-Inducing Signaling Complex.
Mol.Cell, 64, 2016
3J1O
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BU of 3j1o by Molmil
Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module
Descriptor: Mediator of RNA polymerase II transcription subunit 11, Mediator of RNA polymerase II transcription subunit 17, Mediator of RNA polymerase II transcription subunit 18, ...
Authors:Asturias, F.J, Imasaki, T.
Deposit date:2012-03-29
Release date:2013-03-06
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (16 Å)
Cite:Interaction of the mediator head module with RNA polymerase II.
Structure, 20, 2012
3J1N
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BU of 3j1n by Molmil
Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module
Descriptor: DNA-directed RNA polymerase II subunit RPABC1, DNA-directed RNA polymerase II subunit RPABC2, DNA-directed RNA polymerase II subunit RPABC3, ...
Authors:Asturias, F.J, Imasaki, T.
Deposit date:2012-03-29
Release date:2013-03-06
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (16 Å)
Cite:Interaction of the mediator head module with RNA polymerase II.
Structure, 20, 2012

 

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