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3IM2
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BU of 3im2 by Molmil
Structure of the C-terminal Sec63 unit of yeast Brr2, P41212 Form
Descriptor: Pre-mRNA-splicing helicase BRR2, TETRAETHYLENE GLYCOL
Authors:Pena, V, Hrmann, R.L, Wahl, M.C.
Deposit date:2009-08-09
Release date:2009-08-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Common Design Principles in the Spliceosomal RNA Helicase Brr2 and in the Hel308 DNA Helicase
To be Published
3IM1
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BU of 3im1 by Molmil
Structure of the C-terminal Sec63 unit of yeast Brr2, P212121 Form
Descriptor: Pre-mRNA-splicing helicase BRR2
Authors:Pena, V, Hrmann, R.L, Wahl, M.C.
Deposit date:2009-08-09
Release date:2009-08-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Common Design Principles in the Spliceosomal RNA Helicase Brr2 and in the Hel308 DNA Helicase
To be Published
2OG4
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BU of 2og4 by Molmil
Structure of an expanded Jab1-MPN-like domain of splicing factor Prp8p from yeast
Descriptor: Pre-mRNA-splicing factor 8
Authors:Pena, V, Liu, S, Luehrmann, R, Wahl, M.C.
Deposit date:2007-01-05
Release date:2007-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a multipartite protein-protein interaction domain in splicing factor prp8 and its link to retinitis pigmentosa.
Mol.Cell, 25, 2007
3BXJ
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BU of 3bxj by Molmil
Crystal Structure of the C2-GAP Fragment of synGAP
Descriptor: Ras GTPase-activating protein SynGAP
Authors:Pena, V, Hothorn, M, Eberth, A, Kaschau, N, Parret, A, Gremer, L, Bonneau, F, Ahmadian, M.R, Scheffzek, K.
Deposit date:2008-01-14
Release date:2008-03-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:The C2 domain of SynGAP is essential for stimulation of the Rap GTPase reaction.
Embo Rep., 9, 2008
3E9L
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BU of 3e9l by Molmil
Crystal Structure of Human Prp8, Residues 1755-2016
Descriptor: CHLORIDE ION, Pre-mRNA-processing-splicing factor 8, SODIUM ION
Authors:Pena, V, Rozov, A, Wahl, M.C.
Deposit date:2008-08-22
Release date:2008-10-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure and function of an RNase H domain at the heart of the spliceosome.
Embo J., 27, 2008
3E9O
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BU of 3e9o by Molmil
Crystal Structure of Yeast Prp8, Residues 1836-2092
Descriptor: Pre-mRNA-splicing factor 8
Authors:Pena, V, Rozov, A, Wahl, M.C.
Deposit date:2008-08-22
Release date:2008-10-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and function of an RNase H domain at the heart of the spliceosome.
Embo J., 27, 2008
3E9P
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BU of 3e9p by Molmil
Crystal Structure of Yeast Prp8, Residues 1827-2092
Descriptor: Pre-mRNA-splicing factor 8
Authors:Pena, V, Rozov, A, Wahl, M.C.
Deposit date:2008-08-22
Release date:2008-10-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and function of an RNase H domain at the heart of the spliceosome.
Embo J., 27, 2008
7QTT
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BU of 7qtt by Molmil
Structural organization of a late activated human spliceosome (Baqr, core region)
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, BUD13 homolog, Cell division cycle 5-like protein, ...
Authors:Cretu, C, Pena, V.
Deposit date:2022-01-15
Release date:2023-05-10
Last modified:2023-06-14
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis of catalytic activation in human splicing.
Nature, 617, 2023
5HY7
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BU of 5hy7 by Molmil
SF3B10-SF3B130 from Chaetomium thermophilum
Descriptor: CALCIUM ION, Putative pre-mRNA splicing protein, YSF3
Authors:Ponce-Salvatierra, A, Schmitzova, J, Pena, V.
Deposit date:2016-02-01
Release date:2016-10-26
Last modified:2016-11-02
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Molecular Architecture of SF3b and Structural Consequences of Its Cancer-Related Mutations.
Mol.Cell, 64, 2016
5IFE
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BU of 5ife by Molmil
Crystal structure of the human SF3b core complex
Descriptor: PHD finger-like domain-containing protein 5A, POTASSIUM ION, Splicing factor 3B subunit 1, ...
Authors:Cretu, C, Dybkov, O, De Laurentiis, E, Will, C.L, Luhrmann, R, Pena, V.
Deposit date:2016-02-25
Release date:2016-10-26
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Molecular Architecture of SF3b and Structural Consequences of Its Cancer-Related Mutations.
Mol.Cell, 64, 2016
8CH6
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BU of 8ch6 by Molmil
Structure of a late-stage activated spliceosome (BAqr) arrested with a dominant-negative Aquarius mutant (state B complex).
Descriptor: 116 kDa U5 small nuclear ribonucleoprotein component, BUD13 homolog, Cell division cycle 5-like protein, ...
Authors:Cretu, C, Schmitzova, J, Pena, V.
Deposit date:2023-02-07
Release date:2023-05-10
Last modified:2023-06-14
Method:ELECTRON MICROSCOPY (5.9 Å)
Cite:Structural basis of catalytic activation in human splicing.
Nature, 617, 2023
4PJ3
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BU of 4pj3 by Molmil
Structural insight into the function and evolution of the spliceosomal helicase Aquarius, Structure of Aquarius in complex with AMPPNP
Descriptor: Intron-binding protein aquarius, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
Authors:De, I, Bessonov, S, Hofele, R, dos Santos, K.F, Will, C.L, Urlaub, H, Luhrmann, R, Pena, V.
Deposit date:2014-05-11
Release date:2015-01-21
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The RNA helicase Aquarius exhibits structural adaptations mediating its recruitment to spliceosomes.
Nat.Struct.Mol.Biol., 22, 2015
5CKK
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BU of 5ckk by Molmil
Crystal structure of 9DB1* deoxyribozyme
Descriptor: DNA (44-MER), MAGNESIUM ION, RNA (5'-R(P*GP*CP*AP*CP*UP*AP*GP*AP*UP*CP*GP*GP*AP*UP*G)-3')
Authors:Ponce-Salvatierra, A, Hoebartner, C, Pena, V.
Deposit date:2015-07-15
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.801 Å)
Cite:Crystal structure of a DNA catalyst.
Nature, 529, 2016
5CKI
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BU of 5cki by Molmil
Crystal structure of 9DB1* deoxyribozyme (Cobalt hexammine soaked crystals)
Descriptor: COBALT (II) ION, DNA (44-MER), MAGNESIUM ION, ...
Authors:Ponce-Salvatierra, A, Hoebartner, C, Pena, V.
Deposit date:2015-07-15
Release date:2016-01-13
Last modified:2016-01-20
Method:X-RAY DIFFRACTION (2.985 Å)
Cite:Crystal structure of a DNA catalyst.
Nature, 529, 2016
6EN4
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BU of 6en4 by Molmil
SF3b core in complex with a splicing modulator
Descriptor: PHD finger-like domain-containing protein 5A, Splicing factor 3B subunit 1, Splicing factor 3B subunit 3, ...
Authors:Cretu, C, Pena, V.
Deposit date:2017-10-04
Release date:2018-06-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Structural Basis of Splicing Modulation by Antitumor Macrolide Compounds.
Mol. Cell, 70, 2018
4F92
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BU of 4f92 by Molmil
Brr2 Helicase Region S1087L
Descriptor: SULFANILAMIDE, U5 small nuclear ribonucleoprotein 200 kDa helicase
Authors:Santos, K.F, Jovin, S.M, Weber, G, Pena, V, Luehrmann, R, Wahl, M.C.
Deposit date:2012-05-18
Release date:2012-10-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.662 Å)
Cite:Structural basis for functional cooperation between tandem helicase cassettes in Brr2-mediated remodeling of the spliceosome.
Proc.Natl.Acad.Sci.USA, 109, 2012
4F91
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BU of 4f91 by Molmil
Brr2 Helicase Region
Descriptor: U5 small nuclear ribonucleoprotein 200 kDa helicase
Authors:Santos, K.F, Jovin, S.M, Weber, G, Pena, V, Luehrmann, R, Wahl, M.C.
Deposit date:2012-05-18
Release date:2012-10-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.697 Å)
Cite:Structural basis for functional cooperation between tandem helicase cassettes in Brr2-mediated remodeling of the spliceosome.
Proc.Natl.Acad.Sci.USA, 109, 2012
4F93
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BU of 4f93 by Molmil
Brr2 Helicase Region S1087L, Mg-ATP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Santos, K.F, Jovin, S.M, Weber, G, Pena, V, Luehrmann, R, Wahl, M.C.
Deposit date:2012-05-18
Release date:2012-10-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Structural basis for functional cooperation between tandem helicase cassettes in Brr2-mediated remodeling of the spliceosome.
Proc.Natl.Acad.Sci.USA, 109, 2012
5M88
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BU of 5m88 by Molmil
Spliceosome component
Descriptor: Core
Authors:Moura, T.R, Pena, V.
Deposit date:2016-10-28
Release date:2018-02-28
Last modified:2018-03-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Prp19/Pso4 Is an Autoinhibited Ubiquitin Ligase Activated by Stepwise Assembly of Three Splicing Factors.
Mol. Cell, 69, 2018
5M89
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BU of 5m89 by Molmil
Spliceosome component
Descriptor: Spliceosome WD40 Sc
Authors:Moura, T.R, Pena, V.
Deposit date:2016-10-28
Release date:2018-03-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.605 Å)
Cite:Prp19/Pso4 Is an Autoinhibited Ubiquitin Ligase Activated by Stepwise Assembly of Three Splicing Factors.
Mol. Cell, 69, 2018
5M8C
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BU of 5m8c by Molmil
Spliceosome component
Descriptor: Pre-mRNA-processing factor 19
Authors:Moura, T.R, Pena, V.
Deposit date:2016-10-28
Release date:2018-02-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Prp19/Pso4 Is an Autoinhibited Ubiquitin Ligase Activated by Stepwise Assembly of Three Splicing Factors.
Mol. Cell, 69, 2018
6SP0
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BU of 6sp0 by Molmil
Structure of Esco2 acetyltransferase in complex with CoA
Descriptor: COENZYME A, N-acetyltransferase ESCO2, ZINC ION
Authors:De, I, Pena, V.
Deposit date:2019-08-30
Release date:2020-07-01
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Alternative catalytic residues in the active site of Esco acetyltransferases
Sci Rep, 2020
7B0I
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BU of 7b0i by Molmil
Structure of a minimal SF3B core in complex with spliceostatin A (form II)
Descriptor: PHD finger-like domain-containing protein 5A, Splicing factor 3B subunit 1, Splicing factor 3B subunit 3,Splicing factor 3B subunit 3,Splicing factor 3B subunit 3, ...
Authors:Cretu, C, Pena, V.
Deposit date:2020-11-19
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of intron selection by U2 snRNP in the presence of covalent inhibitors.
Nat Commun, 12, 2021
7B92
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BU of 7b92 by Molmil
Structure of a minimal SF3B core in complex with sudemycin D6 (form II)
Descriptor: PHD finger-like domain-containing protein 5A, Splicing factor 3B subunit 1, Splicing factor 3B subunit 3, ...
Authors:Cretu, C, Pena, V.
Deposit date:2020-12-14
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of intron selection by U2 snRNP in the presence of covalent inhibitors.
Nat Commun, 12, 2021
7B9C
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BU of 7b9c by Molmil
Structure of a minimal SF3B core in complex with spliceostatin A (form I)
Descriptor: PHD finger-like domain-containing protein 5A, Splicing factor 3B subunit 1, Splicing factor 3B subunit 3, ...
Authors:Cretu, C, Pena, V.
Deposit date:2020-12-14
Release date:2021-08-04
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis of intron selection by U2 snRNP in the presence of covalent inhibitors.
Nat Commun, 12, 2021

 

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