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1TM9
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BU of 1tm9 by Molmil
NMR Structure of gene target number gi3844938 from Mycoplasma genitalium: Berkeley Structural Genomics Center
Descriptor: Hypothetical protein MG354
Authors:Pelton, J.G, Shi, J, Yokota, H, Kim, R, Wemmer, D.E, Berkeley Structural Genomics Center (BSGC)
Deposit date:2004-06-10
Release date:2004-08-10
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:NMR Structure of Gene Target gi3844938 from Mycoplasma genitalium
To be Published
1NTC
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BU of 1ntc by Molmil
SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF NTRC WITH THREE ALANINE SUBSTITUTIONS
Descriptor: PROTEIN (NITROGEN REGULATION PROTEIN (NTRC))
Authors:Pelton, J.G, Kustu, S, Wemmer, D.E.
Deposit date:1999-05-26
Release date:1999-06-04
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure of the DNA-binding domain of NtrC with three alanine substitutions.
J.Mol.Biol., 292, 1999
3HSF
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BU of 3hsf by Molmil
HEAT SHOCK TRANSCRIPTION FACTOR (HSF)
Descriptor: HEAT SHOCK TRANSCRIPTION FACTOR
Authors:Damberger, F.F, Pelton, J.G, Liu, C, Cho, H, Harrison, C.J, Nelson, H.C.M, Wemmer, D.E.
Deposit date:1995-08-07
Release date:1995-11-14
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Refined solution structure and dynamics of the DNA-binding domain of the heat shock factor from Kluyveromyces lactis.
J.Mol.Biol., 254, 1995
1F4V
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BU of 1f4v by Molmil
CRYSTAL STRUCTURE OF ACTIVATED CHEY BOUND TO THE N-TERMINUS OF FLIM
Descriptor: BERYLLIUM TRIFLUORIDE ION, CHEMOTAXIS CHEY PROTEIN, FLAGELLAR MOTOR SWITCH PROTEIN, ...
Authors:Lee, S.Y, Cho, H.S, Pelton, J.G, Yan, D, Henderson, R.K, King, D, Huang, L.S, Kustu, S, Berry, E.A, Wemmer, D.E.
Deposit date:2000-06-10
Release date:2001-01-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Crystal structure of an activated response regulator bound to its target.
Nat.Struct.Biol., 8, 2001
4FTH
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BU of 4fth by Molmil
Crystal Structure of NtrC4 DNA-binding domain bound to double-stranded DNA
Descriptor: 5'-D(*AP*CP*TP*TP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*AP*AP*AP*TP*GP*CP*AP*T)-3', 5'-D(P*GP*AP*TP*GP*CP*AP*TP*TP*TP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*AP*A)-3', Transcriptional regulator (NtrC family)
Authors:Vidangos, N.K, Heideker, J, Lyubimov, A.Y, Lamers, M, Huo, Y, Pelton, J.G, Ton, J, Gralla, J.D, Kuriyan, J, Berger, J.M, Wemmer, D.E.
Deposit date:2012-06-27
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.004 Å)
Cite:DNA Recognition by a sigma (54) Transcriptional Activator from Aquifex aeolicus.
J.Mol.Biol., 426, 2014
1DJM
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BU of 1djm by Molmil
SOLUTION STRUCTURE OF BEF3-ACTIVATED CHEY FROM ESCHERICHIA COLI
Descriptor: CHEMOTAXIS PROTEIN Y
Authors:Cho, H.S, Lee, S.Y, Yan, D, Pan, X, Parkinson, J.S, Kustu, S, Wemmer, D.E, Pelton, J.G.
Deposit date:1999-12-03
Release date:2000-04-05
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:NMR structure of activated CheY.
J.Mol.Biol., 297, 2000
1FQW
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BU of 1fqw by Molmil
CRYSTAL STRUCTURE OF ACTIVATED CHEY
Descriptor: BERYLLIUM TRIFLUORIDE ION, CHEMOTAXIS CHEY PROTEIN, MANGANESE (II) ION
Authors:Lee, S.Y, Cho, H.S, Pelton, J.G, Yan, D, Berry, E.A, Wemmer, D.E.
Deposit date:2000-09-07
Release date:2001-07-18
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Crystal structure of activated CheY. Comparison with other activated receiver domains.
J.Biol.Chem., 276, 2001
3B39
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BU of 3b39 by Molmil
Structure of the DnaG primase catalytic domain bound to ssDNA
Descriptor: DNA (5'-D(*DCP*DAP*DAP*DAP*DGP*DCP*DCP*DAP*DAP*DAP*DAP*DGP*DGP*DAP*DC)-3'), DNA primase
Authors:Corn, J.E, Pelton, J.G, Berger, J.M.
Deposit date:2007-10-19
Release date:2008-01-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Identification of a DNA primase template tracking site redefines the geometry of primer synthesis.
Nat.Struct.Mol.Biol., 15, 2008
3DZD
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BU of 3dzd by Molmil
Crystal structure of sigma54 activator NTRC4 in the inactive state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, SODIUM ION, Transcriptional regulator (NtrC family)
Authors:Batchelor, J.D, Doucleff, M, Lee, C.-J, Matsubara, K, De Carlo, S, Heideker, J, Lamers, M.M, Pelton, J.G, Wemmer, D.E.
Deposit date:2008-07-29
Release date:2008-11-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure and regulatory mechanism of Aquifex aeolicus NtrC4: variability and evolution in bacterial transcriptional regulation.
J.Mol.Biol., 384, 2008
3E7L
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BU of 3e7l by Molmil
Crystal structure of sigma54 activator NtrC4's DNA binding domain
Descriptor: Transcriptional regulator (NtrC family), ZINC ION
Authors:Batchelor, J.D, Doucleff, M, Lee, C.-J, Matsubara, K, De Carlo, S, Heideker, J, Lamers, M.M, Pelton, J.G, Wemmer, D.E.
Deposit date:2008-08-18
Release date:2008-11-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.252 Å)
Cite:Structure and regulatory mechanism of Aquifex aeolicus NtrC4: variability and evolution in bacterial transcriptional regulation.
J.Mol.Biol., 384, 2008
1PA4
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BU of 1pa4 by Molmil
Solution structure of a putative ribosome-binding factor from Mycoplasma pneumoniae (MPN156)
Descriptor: Probable ribosome-binding factor A
Authors:Rubin, S.M, Pelton, J.G, Yokota, H, Kim, R, Wemmer, D.E, Berkeley Structural Genomics Center (BSGC)
Deposit date:2003-05-13
Release date:2004-03-02
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of a putative ribosome binding protein from Mycoplasma pneumoniae and comparison to a distant homolog.
J.STRUCT.FUNCT.GENOM., 4, 2003
4L5E
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BU of 4l5e by Molmil
Crystal structure of A. aeolicus NtrC1 DNA binding domain
Descriptor: SULFATE ION, Transcriptional regulator (NtrC family)
Authors:Young, A, Maris, A.E, Vidangos, N.K, Hong, E, Pelton, J.G, Batchelor, J.D, Wemmer, D.E.
Deposit date:2013-06-10
Release date:2013-08-28
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structure, function, and tethering of DNA-binding domains in sigma (54) transcriptional activators.
Biopolymers, 99, 2013
4L9U
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BU of 4l9u by Molmil
Structure of C-terminal coiled coil of RasGRP1
Descriptor: GLYCEROL, RAS guanyl-releasing protein 1, SULFATE ION
Authors:Iwig, J.S, Vercoulen, Y, Das, R, Barros, T, Limnander, A, Che, Y, Pelton, J.G, Wemmer, D.E, Roose, J.P, Kuriyan, J.
Deposit date:2013-06-18
Release date:2013-08-21
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.6014 Å)
Cite:Structural analysis of autoinhibition in the Ras-specific exchange factor RasGRP1.
Elife, 2, 2013
4L9M
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BU of 4l9m by Molmil
Autoinhibited state of the Ras-specific exchange factor RasGRP1
Descriptor: CITRIC ACID, GLYCEROL, RAS guanyl-releasing protein 1, ...
Authors:Iwig, J.S, Vercoulen, Y, Das, R, Barros, T, Limnander, A, Che, Y, Pelton, J.G, Wemmer, D.E, Roose, J.P, Kuriyan, J.
Deposit date:2013-06-18
Release date:2013-08-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural analysis of autoinhibition in the Ras-specific exchange factor RasGRP1.
Elife, 2, 2013
4L4U
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BU of 4l4u by Molmil
Crystal structure of construct containing A. aeolicus NtrC1 receiver, central and DNA binding domains
Descriptor: Transcriptional regulator (NtrC family)
Authors:Vidangos, N.K, Maris, A.E, Young, A, Hong, E, Pelton, J.G, Batchelor, J.D, Wemmer, D.E.
Deposit date:2013-06-09
Release date:2013-08-28
Last modified:2013-10-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure, function, and tethering of DNA-binding domains in sigma (54) transcriptional activators.
Biopolymers, 99, 2013
1ZIT
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BU of 1zit by Molmil
Structure of the receiver domain of NtrC4 from Aquifex aeolicus
Descriptor: transcriptional regulator (NtrC family)
Authors:Matsubara, K, Pelton, J.G, Wemmer, D.E.
Deposit date:2005-04-27
Release date:2006-05-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure and consequences of activiation of the receiver domain of NtrC4 from Aquifex aeolicus
To be Published
2AHQ
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BU of 2ahq by Molmil
Solution Structure of the C-terminal RpoN Domain of Sigma-54 from Aquifex aeolicus
Descriptor: RNA polymerase sigma factor RpoN
Authors:Doucleff, M, Malak, L.T, Pelton, J.G, Wemmer, D.E.
Deposit date:2005-07-28
Release date:2005-10-11
Last modified:2022-03-09
Method:SOLUTION NMR
Cite:The C-terminal RpoN domain of sigma54 forms an unpredicted helix-turn-helix motif similar to domains of sigma70.
J.Biol.Chem., 280, 2005
2M20
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BU of 2m20 by Molmil
EGFR transmembrane - juxtamembrane (TM-JM) segment in bicelles: MD guided NMR refined structure.
Descriptor: Epidermal growth factor receptor
Authors:Endres, N.F, Das, R, Smith, A, Arkhipov, A, Kovacs, E, Huang, Y, Pelton, J.G, Shan, Y, Shaw, D.E, Wemmer, D.E, Groves, J.T, Kuriyan, J.
Deposit date:2012-12-11
Release date:2013-02-20
Method:SOLUTION NMR
Cite:Conformational Coupling across the Plasma Membrane in Activation of the EGF Receptor.
Cell(Cambridge,Mass.), 152, 2013
2JMP
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BU of 2jmp by Molmil
Structure for the N-terminus of chromosomal replication initiation protein dnaA from M. genitalium
Descriptor: Chromosomal replication initiator protein dnaA
Authors:Lowery, T.J, Pelton, J.G, Wemmer, D.E, Berkeley Structural Genomics Center (BSGC)
Deposit date:2006-11-27
Release date:2007-07-17
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:NMR structure of the N-terminal domain of the replication initiator protein DnaA.
J.Struct.Funct.Genom., 8, 2007
2KIC
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BU of 2kic by Molmil
n-NafY. N-terminal domain of NafY
Descriptor: Nitrogenase gamma subunit
Authors:Phillips, A.H, Hernandez, J.A, Erbil, K, Pelton, J.G, Wemmer, D.E, Rubio, L.M.
Deposit date:2009-05-01
Release date:2010-12-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Biological activity and solution structure of the apo-dinitrogenase binding domain of NafY
J.Biol.Chem., 2010
2MXD
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BU of 2mxd by Molmil
Solution structure of VPg of porcine sapovirus
Descriptor: Viral protein genome-linked
Authors:Kim, J, Hwang, H, Min, H, Yun, H, Cho, K, Pelton, J.G, Wemmer, D.E, Lee, C.
Deposit date:2014-12-24
Release date:2015-04-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Solution structure of the porcine sapovirus VPg core reveals a stable three-helical bundle with a conserved surface patch.
Biochem.Biophys.Res.Commun., 459, 2015
2O8K
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BU of 2o8k by Molmil
NMR Structure of the Sigma-54 RpoN Domain Bound to the-24 Promoter Element
Descriptor: 5'-D(*GP*AP*AP*AP*CP*GP*TP*GP*CP*CP*AP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*GP*CP*AP*CP*GP*TP*TP*TP*C)-3', RNA polymerase sigma factor RpoN
Authors:Doucleff, M, Pelton, J.G, Lee, P.S, Wemmer, D.E.
Deposit date:2006-12-12
Release date:2007-07-17
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structural basis of DNA recognition by the alternative sigma-factor, sigma54.
J.Mol.Biol., 369, 2007
2O9L
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BU of 2o9l by Molmil
AMBER refined NMR Structure of the Sigma-54 RpoN Domain Bound to the-24 Promoter Element
Descriptor: 5'-D(*GP*AP*AP*AP*CP*GP*TP*GP*CP*CP*AP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*GP*CP*AP*CP*GP*TP*TP*TP*C)-3', RNA polymerase sigma factor RpoN
Authors:Doucleff, M, Pelton, J.G, Lee, P.S, Wemmer, D.E.
Deposit date:2006-12-13
Release date:2007-07-17
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structural basis of DNA recognition by the alternative sigma-factor, sigma54.
J.Mol.Biol., 369, 2007
7JSD
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BU of 7jsd by Molmil
Hydroxylase homolog of BesD with Fe(II), alpha-ketoglutarate, and lysine
Descriptor: 2-OXOGLUTARIC ACID, FE (II) ION, LYSINE, ...
Authors:Kissman, E.N, Neugebauer, M.E, Chang, M.C.Y.
Deposit date:2020-08-14
Release date:2021-08-25
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Reaction pathway engineering converts a radical hydroxylase into a halogenase.
Nat.Chem.Biol., 18, 2022
6NIE
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BU of 6nie by Molmil
BesD with Fe(II), chloride, and alpha-ketoglutarate
Descriptor: 2-OXOGLUTARIC ACID, BesD, lysine halogenase, ...
Authors:Neugebauer, M.E, Chang, M.C.Y.
Deposit date:2018-12-27
Release date:2019-10-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A family of radical halogenases for the engineering of amino-acid-based products.
Nat.Chem.Biol., 15, 2019

 

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