Author results

1NTC
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SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF NTRC WITH THREE ALANINE SUBSTITUTIONS
Descriptor:PROTEIN (NITROGEN REGULATION PROTEIN (NTRC))
Authors:Pelton, J.G., Kustu, S., Wemmer, D.E.
Deposit date:1999-05-26
Release date:1999-06-04
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of the DNA-binding domain of NtrC with three alanine substitutions.
J.Mol.Biol., 292, 1999
1TM9
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NMR STRUCTURE OF GENE TARGET NUMBER GI3844938 FROM MYCOPLASMA GENITALIUM: BERKELEY STRUCTURAL GENOMICS CENTER
Descriptor:Hypothetical protein MG354
Authors:Pelton, J.G., Shi, J., Yokota, H., Kim, R., Wemmer, D.E., Berkeley Structural Genomics Center (BSGC)
Deposit date:2004-06-10
Release date:2004-08-10
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR Structure of Gene Target gi3844938 from Mycoplasma genitalium
To be Published
1F4V
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CRYSTAL STRUCTURE OF ACTIVATED CHEY BOUND TO THE N-TERMINUS OF FLIM
Descriptor:CHEMOTAXIS CHEY PROTEIN, FLAGELLAR MOTOR SWITCH PROTEIN, MAGNESIUM ION, ...
Authors:Lee, S.Y., Cho, H.S., Pelton, J.G., Yan, D., Henderson, R.K., King, D., Huang, L.S., Kustu, S., Berry, E.A., Wemmer, D.E.
Deposit date:2000-06-10
Release date:2001-01-17
Last modified:2018-04-18
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Crystal structure of an activated response regulator bound to its target.
Nat.Struct.Biol., 8, 2001
1DJM
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SOLUTION STRUCTURE OF BEF3-ACTIVATED CHEY FROM ESCHERICHIA COLI
Descriptor:CHEMOTAXIS PROTEIN Y
Authors:Cho, H.S., Lee, S.Y., Yan, D., Pan, X., Parkinson, J.S., Kustu, S., Wemmer, D.E., Pelton, J.G.
Deposit date:1999-12-03
Release date:2000-04-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of activated CheY.
J.Mol.Biol., 297, 2000
1FQW
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CRYSTAL STRUCTURE OF ACTIVATED CHEY
Descriptor:CHEMOTAXIS CHEY PROTEIN, MANGANESE (II) ION, BERYLLIUM TRIFLUORIDE ION
Authors:Lee, S.Y., Cho, H.S., Pelton, J.G., Yan, D., Berry, E.A., Wemmer, D.E.
Deposit date:2000-09-07
Release date:2001-07-18
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Crystal structure of activated CheY. Comparison with other activated receiver domains.
J.Biol.Chem., 276, 2001
2M20
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EGFR TRANSMEMBRANE - JUXTAMEMBRANE (TM-JM) SEGMENT IN BICELLES: MD GUIDED NMR REFINED STRUCTURE.
Descriptor:Epidermal growth factor receptor
Authors:Endres, N.F., Das, R., Smith, A., Arkhipov, A., Kovacs, E., Huang, Y., Pelton, J.G., Shan, Y., Shaw, D.E., Wemmer, D.E., Groves, J.T., Kuriyan, J.
Deposit date:2012-12-11
Release date:2013-02-20
Method:SOLUTION NMR
Cite:Conformational Coupling across the Plasma Membrane in Activation of the EGF Receptor.
Cell(Cambridge,Mass.), 152, 2013
3HSF
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HEAT SHOCK TRANSCRIPTION FACTOR (HSF)
Descriptor:HEAT SHOCK TRANSCRIPTION FACTOR
Authors:Damberger, F.F., Pelton, J.G., Liu, C., Cho, H., Harrison, C.J., Nelson, H.C.M., Wemmer, D.E.
Deposit date:1995-08-07
Release date:1995-11-14
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Refined solution structure and dynamics of the DNA-binding domain of the heat shock factor from Kluyveromyces lactis.
J.Mol.Biol., 254, 1995
1PA4
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SOLUTION STRUCTURE OF A PUTATIVE RIBOSOME-BINDING FACTOR FROM MYCOPLASMA PNEUMONIAE (MPN156)
Descriptor:Probable ribosome-binding factor A
Authors:Rubin, S.M., Pelton, J.G., Yokota, H., Kim, R., Wemmer, D.E., Berkeley Structural Genomics Center (BSGC)
Deposit date:2003-05-13
Release date:2004-03-02
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution structure of a putative ribosome binding protein from Mycoplasma pneumoniae and comparison to a distant homolog.
J.STRUCT.FUNCT.GENOM., 4, 2003
1ZIT
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STRUCTURE OF THE RECEIVER DOMAIN OF NTRC4 FROM AQUIFEX AEOLICUS
Descriptor:transcriptional regulator (NtrC family)
Authors:Matsubara, K., Pelton, J.G., Wemmer, D.E.
Deposit date:2005-04-27
Release date:2006-05-09
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure and consequences of activiation of the receiver domain of NtrC4 from Aquifex aeolicus
To be Published
2AHQ
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SOLUTION STRUCTURE OF THE C-TERMINAL RPON DOMAIN OF SIGMA-54 FROM AQUIFEX AEOLICUS
Descriptor:RNA polymerase sigma factor RpoN
Authors:Doucleff, M., Malak, L.T., Pelton, J.G., Wemmer, D.E.
Deposit date:2005-07-28
Release date:2005-10-11
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:The C-terminal RpoN domain of sigma54 forms an unpredicted helix-turn-helix motif similar to domains of sigma70.
J.Biol.Chem., 280, 2005
2JMP
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STRUCTURE FOR THE N-TERMINUS OF CHROMOSOMAL REPLICATION INITIATION PROTEIN DNAA FROM M. GENITALIUM
Descriptor:Chromosomal replication initiator protein dnaA
Authors:Lowery, T.J., Pelton, J.G., Wemmer, D.E., Berkeley Structural Genomics Center (BSGC)
Deposit date:2006-11-27
Release date:2007-07-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:NMR structure of the N-terminal domain of the replication initiator protein DnaA.
J.Struct.Funct.Genom., 8, 2007
2KIC
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N-NAFY. N-TERMINAL DOMAIN OF NAFY
Descriptor:Nitrogenase gamma subunit
Authors:Phillips, A.H., Hernandez, J.A., Erbil, K., Pelton, J.G., Wemmer, D.E., Rubio, L.M.
Deposit date:2009-05-01
Release date:2010-12-08
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Biological activity and solution structure of the apo-dinitrogenase binding domain of NafY
J.Biol.Chem., 2010
2MXD
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SOLUTION STRUCTURE OF VPG OF PORCINE SAPOVIRUS
Descriptor:Viral protein genome-linked
Authors:Kim, J., Hwang, H., Min, H., Yun, H., Cho, K., Pelton, J.G., Wemmer, D.E., Lee, C.
Deposit date:2014-12-24
Release date:2015-04-15
Method:SOLUTION NMR
Cite:Solution structure of the porcine sapovirus VPg core reveals a stable three-helical bundle with a conserved surface patch.
Biochem.Biophys.Res.Commun., 459, 2015
2O8K
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NMR STRUCTURE OF THE SIGMA-54 RPON DOMAIN BOUND TO THE-24 PROMOTER ELEMENT
Descriptor:5'-D(*TP*TP*TP*TP*GP*GP*CP*AP*CP*GP*TP*TP*TP*C)-3', 5'-D(*GP*AP*AP*AP*CP*GP*TP*GP*CP*CP*AP*AP*AP*A)-3', RNA polymerase sigma factor RpoN
Authors:Doucleff, M., Pelton, J.G., Lee, P.S., Wemmer, D.E.
Deposit date:2006-12-12
Release date:2007-07-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis of DNA recognition by the alternative sigma-factor, sigma54.
J.Mol.Biol., 369, 2007
2O9L
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AMBER REFINED NMR STRUCTURE OF THE SIGMA-54 RPON DOMAIN BOUND TO THE-24 PROMOTER ELEMENT
Descriptor:5'-D(*TP*TP*TP*TP*GP*GP*CP*AP*CP*GP*TP*TP*TP*C)-3', 5'-D(*GP*AP*AP*AP*CP*GP*TP*GP*CP*CP*AP*AP*AP*A)-3', RNA polymerase sigma factor RpoN
Authors:Doucleff, M., Pelton, J.G., Lee, P.S., Wemmer, D.E.
Deposit date:2006-12-13
Release date:2007-07-17
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural basis of DNA recognition by the alternative sigma-factor, sigma54.
J.Mol.Biol., 369, 2007
3B39
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STRUCTURE OF THE DNAG PRIMASE CATALYTIC DOMAIN BOUND TO SSDNA
Descriptor:DNA (5'-D(*DCP*DAP*DAP*DAP*DGP*DCP*DCP*DAP*DAP*DAP*DAP*DGP*DGP*DAP*DC)-3'), DNA primase
Authors:Corn, J.E., Pelton, J.G., Berger, J.M.
Deposit date:2007-10-19
Release date:2008-01-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Identification of a DNA primase template tracking site redefines the geometry of primer synthesis.
Nat.Struct.Mol.Biol., 15, 2008
3DZD
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CRYSTAL STRUCTURE OF SIGMA54 ACTIVATOR NTRC4 IN THE INACTIVE STATE
Descriptor:Transcriptional regulator (NtrC family), ADENOSINE-5'-DIPHOSPHATE, SODIUM ION
Authors:Batchelor, J.D., Doucleff, M., Lee, C.-J., Matsubara, K., De Carlo, S., Heideker, J., Lamers, M.M., Pelton, J.G., Wemmer, D.E.
Deposit date:2008-07-29
Release date:2008-11-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure and regulatory mechanism of Aquifex aeolicus NtrC4: variability and evolution in bacterial transcriptional regulation.
J.Mol.Biol., 384, 2008
3E7L
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CRYSTAL STRUCTURE OF SIGMA54 ACTIVATOR NTRC4'S DNA BINDING DOMAIN
Descriptor:Transcriptional regulator (NtrC family), ZINC ION
Authors:Batchelor, J.D., Doucleff, M., Lee, C.-J., Matsubara, K., De Carlo, S., Heideker, J., Lamers, M.M., Pelton, J.G., Wemmer, D.E.
Deposit date:2008-08-18
Release date:2008-11-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.252 Å)
Cite:Structure and regulatory mechanism of Aquifex aeolicus NtrC4: variability and evolution in bacterial transcriptional regulation.
J.Mol.Biol., 384, 2008
4FTH
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CRYSTAL STRUCTURE OF NTRC4 DNA-BINDING DOMAIN BOUND TO DOUBLE-STRANDED DNA
Descriptor:Transcriptional regulator (NtrC family), 5'-D(*AP*CP*TP*TP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*AP*AP*AP*TP*GP*CP*AP*T)-3', 5'-D(P*GP*AP*TP*GP*CP*AP*TP*TP*TP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*AP*A)-3'
Authors:Vidangos, N.K., Heideker, J., Lyubimov, A.Y., Lamers, M., Huo, Y., Pelton, J.G., Ton, J., Gralla, J.D., Kuriyan, J., Berger, J.M., Wemmer, D.E.
Deposit date:2012-06-27
Release date:2012-08-29
Last modified:2014-11-12
Method:X-RAY DIFFRACTION (3.004 Å)
Cite:DNA Recognition by a sigma (54) Transcriptional Activator from Aquifex aeolicus.
J.Mol.Biol., 426, 2014
4L4U
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CRYSTAL STRUCTURE OF CONSTRUCT CONTAINING A. AEOLICUS NTRC1 RECEIVER, CENTRAL AND DNA BINDING DOMAINS
Descriptor:Transcriptional regulator (NtrC family)
Authors:Vidangos, N.K., Maris, A.E., Young, A., Hong, E., Pelton, J.G., Batchelor, J.D., Wemmer, D.E.
Deposit date:2013-06-09
Release date:2013-08-28
Last modified:2013-10-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure, function, and tethering of DNA-binding domains in sigma (54) transcriptional activators.
Biopolymers, 99, 2013
4L5E
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CRYSTAL STRUCTURE OF A. AEOLICUS NTRC1 DNA BINDING DOMAIN
Descriptor:Transcriptional regulator (NtrC family), SULFATE ION
Authors:Young, A., Maris, A.E., Vidangos, N.K., Hong, E., Pelton, J.G., Batchelor, J.D., Wemmer, D.E.
Deposit date:2013-06-10
Release date:2013-08-28
Last modified:2013-10-23
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structure, function, and tethering of DNA-binding domains in sigma (54) transcriptional activators.
Biopolymers, 99, 2013
4L9M
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AUTOINHIBITED STATE OF THE RAS-SPECIFIC EXCHANGE FACTOR RASGRP1
Descriptor:RAS guanyl-releasing protein 1, CITRIC ACID, GLYCEROL, ...
Authors:Iwig, J.S., Vercoulen, Y., Das, R., Barros, T., Limnander, A., Che, Y., Pelton, J.G., Wemmer, D.E., Roose, J.P., Kuriyan, J.
Deposit date:2013-06-18
Release date:2013-08-21
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural analysis of autoinhibition in the Ras-specific exchange factor RasGRP1.
Elife, 2, 2013
4L9U
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STRUCTURE OF C-TERMINAL COILED COIL OF RASGRP1
Descriptor:RAS guanyl-releasing protein 1, GLYCEROL, SULFATE ION
Authors:Iwig, J.S., Vercoulen, Y., Das, R., Barros, T., Limnander, A., Che, Y., Pelton, J.G., Wemmer, D.E., Roose, J.P., Kuriyan, J.
Deposit date:2013-06-18
Release date:2013-08-21
Method:X-RAY DIFFRACTION (1.6014 Å)
Cite:Structural analysis of autoinhibition in the Ras-specific exchange factor RasGRP1.
Elife, 2, 2013
1ZDM
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CRYSTAL STRUCTURE OF ACTIVATED CHEY BOUND TO XE
Descriptor:Chemotaxis protein cheY, MANGANESE (II) ION, XENON
Authors:Lowery, T.J., Doucleff, M., Ruiz, E.J., Rubin, S.M., Pines, A., Wemmer, D.E.
Deposit date:2005-04-14
Release date:2005-04-26
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Distinguishing multiple chemotaxis Y protein conformations with laser-polarized 129Xe NMR.
Protein Sci., 14, 2005
2JRL
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SOLUTION STRUCTURE OF THE BERYLLOFLUORIDE-ACTIVATED NTRC4 RECEIVER DOMAIN DIMER
Descriptor:Transcriptional regulator (NtrC family)
Authors:Lee, C., Hong, E., Doucleff, M., Pelton, J.G., Wemmer, D.E., Berkeley Structural Genomics Center (BSGC)
Deposit date:2007-06-27
Release date:2008-07-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Solution Structure of the Beryllofluoride-Activated NtrC4 Receiver Domain Dimer.
To be Published
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