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3HQJ
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BU of 3hqj by Molmil
Structure-function analysis of Mycobacterium tuberculosis acyl carrier protein synthase (AcpS).
Descriptor: COENZYME A, Holo-[acyl-carrier-protein] synthase, MAGNESIUM ION
Authors:Dym, O, Albeck, S, Peleg, Y, Schwarz, A, Shakked, Z, Burstein, Y, Zimhony, O, Israel Structural Proteomics Center (ISPC)
Deposit date:2009-06-07
Release date:2009-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure-function analysis of the acyl carrier protein synthase (AcpS) from Mycobacterium tuberculosis.
J.Mol.Biol., 393, 2009
7O4D
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BU of 7o4d by Molmil
QR2 inhibitor from a novel sulfanamide series to tackle age related oxidative stress and cognitive decline
Descriptor: 8-methyl-2-(4-methyl-3-piperazin-1-ylsulfonyl-phenyl)imidazo[1,2-a]pyridine, FLAVIN-ADENINE DINUCLEOTIDE, Ribosyldihydronicotinamide dehydrogenase [quinone], ...
Authors:Gould, N.L, Scherer, G.R, Carvalh, S, Shurrush, K, Edry, E, Elkobi, A, David, O, Dym, O, Albeck, S, Peleg, Y, Germain, N, Babaev, I, Sharir, H, Lefker, B, Subramanyam, C, Barr, H, Rosenblum, K.
Deposit date:2021-04-06
Release date:2022-08-17
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.249 Å)
Cite:Specific quinone reductase 2 inhibitors reduce metabolic burden and reverse Alzheimer's disease phenotype in mice.
J.Clin.Invest., 133, 2023
2V9D
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BU of 2v9d by Molmil
Crystal Structure of YagE, a prophage protein belonging to the dihydrodipicolinic acid synthase family from E. coli K12
Descriptor: YAGE
Authors:Manicka, S, Peleg, Y, Unger, T, Albeck, S, Dym, O, Greenblatt, H.M, Bourenkov, G, Lamzin, V, Krishnaswamy, S, Sussman, J.L.
Deposit date:2007-08-23
Release date:2008-03-04
Last modified:2019-11-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal Structure of Yage, a Putative Dhdps Like Protein from Escherichia Coli K12.
Proteins: Struct., Funct., Bioinf., 71, 2008
2V8Z
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BU of 2v8z by Molmil
Crystal Structure of YagE, a prophage protein belonging to the dihydrodipicolinic acid synthase family from E. coli K12
Descriptor: YAGE
Authors:Manicka, S, Peleg, Y, Unger, T, Albeck, S, Dym, O, Greenblatt, H.M, Bourenkov, G, Lamzin, V, Krishnaswamy, S, Sussman, J.L.
Deposit date:2007-08-16
Release date:2008-03-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Yage, a Putative Dhdps Like Protein from Escherichia Coli K12.
Proteins: Struct., Funct., Bioinf., 71, 2008
6HAP
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BU of 6hap by Molmil
Adenylate kinase
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE
Authors:Kantaev, R, Inbal, R, Goldenzweig, A, Barak, Y, Dym, O, Peleg, Y, Albek, S, Fleishman, S.J, Haran, G.
Deposit date:2018-08-08
Release date:2019-08-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Manipulating the Folding Landscape of a Multidomain Protein.
J.Phys.Chem.B, 122, 2018
6HAM
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BU of 6ham by Molmil
Adenylate kinase
Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE
Authors:Kantaev, R, Inbal, R, Goldenzweig, A, Barak, Y, Dym, O, Peleg, Y, Albek, S, Fleishman, S.J, Haran, G.
Deposit date:2018-08-08
Release date:2019-08-28
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Manipulating the Folding Landscape of a Multidomain Protein.
J.Phys.Chem.B, 122, 2018
7PL9
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BU of 7pl9 by Molmil
Cryo-EM structure of Bestrhodopsin (rhodopsin-rhodopsin-bestrophin) complex
Descriptor: RETINAL, Rhodopsin
Authors:Matzov, D, Kaczmarczyk, I, Shalev-Benami, M.
Deposit date:2021-08-29
Release date:2022-07-06
Method:ELECTRON MICROSCOPY (3.21 Å)
Cite:Rhodopsin-bestrophin fusion proteins from unicellular algae form gigantic pentameric ion channels.
Nat.Struct.Mol.Biol., 29, 2022
6QJZ
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BU of 6qjz by Molmil
Identificationand Characterization of an Oxalylfrom Grass pea (Lathyrus sativusCoA-Synthetase L.)
Descriptor: ADENOSINE MONOPHOSPHATE, oxalyl CoA-synthetase
Authors:Dym, O.
Deposit date:2019-01-28
Release date:2020-08-26
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The identification and characterization of an oxalyl-CoA synthetase from grass pea ( Lathyrus sativus L.).
Rsc Chem Biol, 3, 2022
3D3M
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BU of 3d3m by Molmil
The Crystal Structure of the C-terminal region of Death Associated Protein 5(DAP5)
Descriptor: Eukaryotic translation initiation factor 4 gamma 2
Authors:Dym, O, Israel Structural Proteomics Center (ISPC)
Deposit date:2008-05-12
Release date:2008-10-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of the C-terminal DAP5/p97 domain sheds light on the molecular basis for its processing by caspase cleavage.
J.Mol.Biol., 383, 2008
6YBH
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BU of 6ybh by Molmil
Deoxyribonucleoside Kinase
Descriptor: Deoxynucleoside kinase, GLYCEROL, Pyrrolo-dC, ...
Authors:Allouche-Arnon, H, Bar-Shir, A, Dym, O.
Deposit date:2020-03-17
Release date:2021-03-31
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Computationally designed dual-color MRI reporters for noninvasive imaging of transgene expression.
Nat.Biotechnol., 40, 2022
5HPZ
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BU of 5hpz by Molmil
type II water soluble Chl binding proteins
Descriptor: 13'2-hydroxyl-Chlorophyll a, Water-soluble chlorophyll protein
Authors:Bednarczyk, D, Dym, O, Prabahard, V, Noy, D.
Deposit date:2016-01-21
Release date:2016-05-04
Last modified:2019-05-29
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Fine Tuning of Chlorophyll Spectra by Protein-Induced Ring Deformation.
Angew.Chem.Int.Ed.Engl., 55, 2016
6ZBS
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BU of 6zbs by Molmil
Beta ODAP Synthetase (BOS)
Descriptor: Beta ODAP Synthetase (BOS), DI(HYDROXYETHYL)ETHER, MAGNESIUM ION
Authors:Dym, O.
Deposit date:2020-06-09
Release date:2022-01-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Identification and characterization of the key enzyme in the biosynthesis of the neurotoxin beta-ODAP in grass pea.
J.Biol.Chem., 298, 2022
7AUE
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BU of 7aue by Molmil
Melanocortin receptor 4 (MC4R) Gs protein complex
Descriptor: AMINOSERINE, CALCIUM ION, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Degtjarik, O, Israeli, H, Prabahar, V, Shalev-Benami, M.
Deposit date:2020-11-02
Release date:2021-04-28
Last modified:2023-03-15
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:Structure reveals the activation mechanism of the MC4 receptor to initiate satiation signaling.
Science, 372, 2021
4PTN
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BU of 4ptn by Molmil
Crystal Structure of YagE, a KDG aldolase protein in complex with Magnesium cation coordinated L-glyceraldehyde
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, L-glyceraldehyde, ...
Authors:Manoj Kumar, P, Baskar, V, Manicka, S, Krishnaswamy, S.
Deposit date:2014-03-11
Release date:2014-12-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal structure of YagE, a putative DHDPS-like protein from Escherichia coli K12.
Proteins, 71, 2008
6GG1
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BU of 6gg1 by Molmil
Structure of PROSS-edited human interleukin 24
Descriptor: Interleukin-24, NICKEL (II) ION, SULFATE ION
Authors:Kolenko, P, Zahradnik, J, Kolarova, L, Schneider, B.
Deposit date:2018-05-02
Release date:2019-05-15
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Flexible regions govern promiscuous binding of IL-24 to receptors IL-20R1 and IL-22R1.
Febs J., 286, 2019
6GJC
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BU of 6gjc by Molmil
Structure of Mycobacterium tuberculosis Fatty Acid Synthase - I
Descriptor: FLAVIN MONONUCLEOTIDE, Fatty acid synthase
Authors:Elad, N, Baron, S, Shakked, Z, Zimhony, O, Diskin, R.
Deposit date:2018-05-16
Release date:2018-09-05
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of Type-I Mycobacterium tuberculosis fatty acid synthase at 3.3 angstrom resolution.
Nat Commun, 9, 2018
3TPP
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BU of 3tpp by Molmil
Crystal structure of BACE1 complexed with an inhibitor
Descriptor: Beta-secretase 1, CHLORIDE ION, N-[(1S,2R)-1-BENZYL-3-(CYCLOPROPYLAMINO)-2-HYDROXYPROPYL]-5-[METHYL(METHYLSULFONYL)AMINO]-N'-[(1R)-1-PHENYLETHYL]ISOPHTHALAMIDE, ...
Authors:Xu, Y.C, Li, M.J, Greenblatt, H, Chen, T.T, Silman, I, Sussman, J.L.
Deposit date:2011-09-08
Release date:2011-11-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Flexibility of the flap in the active site of BACE1 as revealed by crystal structures and molecular dynamics simulations
Acta Crystallogr.,Sect.D, 68, 2012
3TPJ
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BU of 3tpj by Molmil
APO structure of BACE1
Descriptor: Beta-secretase 1, CHLORIDE ION, SULFATE ION, ...
Authors:Xu, Y.C, Li, M.J, Greenblatt, H, Chen, T.T, Silman, I, Sussman, J.L.
Deposit date:2011-09-08
Release date:2011-11-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Flexibility of the flap in the active site of BACE1 as revealed by crystal structures and molecular dynamics simulations
Acta Crystallogr.,Sect.D, 68, 2012
3TPR
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BU of 3tpr by Molmil
Crystal structure of BACE1 complexed with an inhibitor
Descriptor: Beta-secretase 1, CHLORIDE ION, N-[(1S,2R)-1-BENZYL-3-(CYCLOPROPYLAMINO)-2-HYDROXYPROPYL]-5-[METHYL(METHYLSULFONYL)AMINO]-N'-[(1R)-1-PHENYLETHYL]ISOPHTHALAMIDE
Authors:Xu, Y.C, Li, M.J, Greenblatt, H, Chen, T.T, Silman, I, Sussman, J.L.
Deposit date:2011-09-08
Release date:2011-11-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Flexibility of the flap in the active site of BACE1 as revealed by crystal structures and molecular dynamics simulations
Acta Crystallogr.,Sect.D, 68, 2012
3TPL
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BU of 3tpl by Molmil
APO Structure of BACE1
Descriptor: Beta-secretase 1, CHLORIDE ION, SULFATE ION
Authors:Xu, Y.C, Li, M.J, Greenblatt, H, Chen, T.T, Silman, I, Sussman, J.L.
Deposit date:2011-09-08
Release date:2011-11-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Flexibility of the flap in the active site of BACE1 as revealed by crystal structures and molecular dynamics simulations
Acta Crystallogr.,Sect.D, 68, 2012
4OE7
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BU of 4oe7 by Molmil
Crystal structure of YagE, a KDG aldolase protein, in complex with aldol condensed product of pyruvate and glyoxal
Descriptor: (4R)-4-hydroxy-2,5-dioxopentanoic acid, (4S)-4-hydroxy-2,5-dioxopentanoic acid, 1,2-ETHANEDIOL, ...
Authors:Manoj Kumar, P, Baskar, V, Manicka, S, Krishnaswamy, S.
Deposit date:2014-01-12
Release date:2014-12-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Crystal structure of YagE, a KDG aldolase protein, in complex with aldol condensed product of pyruvate and glyoxal
To be Published
4ONV
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BU of 4onv by Molmil
Crystal structure of YagE, a KDG aldolase protein in complex with 2-Keto-3-deoxy gluconate
Descriptor: 1,2-ETHANEDIOL, 2-KETO-3-DEOXYGLUCONATE, GLYCEROL, ...
Authors:Manoj Kumar, P, Bhaskar, V, Manicka, S, Krishnaswamy, S.
Deposit date:2014-01-29
Release date:2015-01-14
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Crystal structure of YagE, a KDG aldolase protein in complex with 2-Keto-3-deoxy gluconate
To be Published

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