Author results

1IRD
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CRYSTAL STRUCTURE OF HUMAN CARBONMONOXY-HAEMOGLOBIN AT 1.25 A RESOLUTION
Descriptor:Hemoglobin alpha chain, Hemoglobin beta chain, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Park, S.-Y., Tame, J.R.H.
Deposit date:2001-09-27
Release date:2001-10-17
Last modified:2019-08-21
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Carbonmonoxy-Haemoglobin at 1.25 A Resolution
To be Published
1UIW
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CRYSTAL STRUCTURES OF UNLIGANDED AND HALF-LIGANDED HUMAN HEMOGLOBIN DERIVATIVES CROSS-LINKED BETWEEN LYS 82BETA1 AND LYS 82BETA2
Descriptor:Hemoglobin alpha chain, Hemoglobin beta chain, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Park, S.-Y., Shibayama, N., Tame, J.R.H.
Deposit date:2003-07-23
Release date:2003-08-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of unliganded and half-liganded human hemoglobin derivatives cross-linked between Lys 82beta1 and Lys 82beta2
Biochemistry, 43, 2004
2DN1
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1.25A RESOLUTION CRYSTAL STRUCTURE OF HUMAN HEMOGLOBIN IN THE OXY FORM
Descriptor:Hemoglobin alpha subunit, Hemoglobin beta subunit, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Park, S.-Y., Yokoyama, T., Shibayama, N., Shiro, Y., Tame, J.R.
Deposit date:2006-04-25
Release date:2006-05-09
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:1.25 a resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms.
J.Mol.Biol., 360, 2006
2DN2
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1.25A RESOLUTION CRYSTAL STRUCTURE OF HUMAN HEMOGLOBIN IN THE DEOXY FORM
Descriptor:Hemoglobin alpha subunit, Hemoglobin beta subunit, PROTOPORPHYRIN IX CONTAINING FE
Authors:Park, S.-Y., Yokoyama, T., Shibayama, N., Shiro, Y., Tame, J.R.
Deposit date:2006-04-25
Release date:2006-05-09
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:1.25 a resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms.
J.Mol.Biol., 360, 2006
2DN3
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1.25A RESOLUTION CRYSTAL STRUCTURE OF HUMAN HEMOGLOBIN IN THE CARBONMONOXY FORM
Descriptor:Hemoglobin alpha subunit, Hemoglobin beta subunit, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Park, S.-Y., Yokoyama, T., Shibayama, N., Shiro, Y., Tame, J.R.
Deposit date:2006-04-25
Release date:2006-05-09
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:1.25 a resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms.
J.Mol.Biol., 360, 2006
2E46
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CRYSTAL STRUCTURE ANALYSIS OF THE CLOCK PROTEIN EA4
Descriptor:Time interval measuring enzyme TIME, COPPER (II) ION, ZINC ION
Authors:Park, S.-Y., Hiraki, T.
Deposit date:2006-12-05
Release date:2008-02-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:the clock protein EA4 ticks away with movement of a mobile copper ion
To be Published
2E47
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CRYSTAL STRUCTURE ANALYSIS OF THE CLOCK PROTEIN EA4 (GLYCOSYLATION FORM)
Descriptor:Time interval measuring enzyme TIME, N-ACETYL-D-GLUCOSAMINE, ALPHA-D-MANNOSE, ...
Authors:Park, S.-Y., Hiraki, T.
Deposit date:2006-12-05
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:the clock protein EA4 ticks away with movement of a mobile copper ion
To be Published
4YUS
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CRYSTAL STRUCTURE OF PHOTOACTIVATED ADENYLYL CYCLASE OF A CYANOBACTERIAOSCILLATORIA ACUMINATA IN HEXAGONAL FORM
Descriptor:Family 3 adenylate cyclase, FLAVIN MONONUCLEOTIDE
Authors:Park, S.-Y., Ohki, M., Sugiyama, K., Kawai, F., Iseki, M.
Deposit date:2015-03-19
Release date:2016-06-01
Last modified:2016-06-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insight into photoactivation of an adenylate cyclase from a photosynthetic cyanobacterium
Proc.Natl.Acad.Sci.USA, 113, 2016
4YUT
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CRYSTAL STRUCTURE OF PHOTOACTIVATED ADENYLYL CYCLASE OF A CYANOBACTERIAOSCILLATORIA ACUMINATA IN ORTHORHOMBIC FORM
Descriptor:Family 3 adenylate cyclase, FLAVIN MONONUCLEOTIDE
Authors:Park, S.-Y., Ohki, M., Sugiyama, K., Kawai, F., Iseki, M.
Deposit date:2015-03-19
Release date:2016-06-01
Last modified:2016-06-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural insight into photoactivation of an adenylate cyclase from a photosynthetic cyanobacterium
Proc.Natl.Acad.Sci.USA, 113, 2016
6AB9
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THE CRYSTAL STRUCTURE OF THE RELAXED STATE OF NONLABENS MARINUS RHODOPSIN 3
Descriptor:Chloride pumping rhodopsin, CHLORIDE ION, RETINAL, ...
Authors:Yun, J.-H., Ohki, M., Park, J.-H., Jin, Z., Lee, W., Liu, H., Tame, J.R.H., Shibayama, N., Park, S.-Y.
Deposit date:2018-07-20
Release date:2019-07-31
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The pumping mechanism of NM-R3, a light-driven cyanobacterial chloride importer in the rhodopsin family
To Be Published
6ABA
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THE CRYSTAL STRUCTURE OF THE PHOTOACTIVATED STATE OF NONLABENS MARINUS RHODOPSIN 3
Descriptor:Chloride pumping rhodopsin, CHLORIDE ION, RETINAL, ...
Authors:Yun, J.-H., Ohki, M., Park, J.-H., Jin, Z., Lee, W., Liu, H., Tame, J.R.H., Shibayama, N., Park, S.-Y.
Deposit date:2018-07-20
Release date:2019-07-31
Method:X-RAY DIFFRACTION (1.797 Å)
Cite:The pumping mechanism of NM-R3, a light-driven marine bacterial chloride importer in the rhodopsin family
To Be Published
1F24
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CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ALA MUTANTS OF CYTOCHROME P450NOR
Descriptor:NITRIC OXIDE REDUCTASE, PROTOPORPHYRIN IX CONTAINING FE, NITRIC OXIDE, ...
Authors:Shimizu, H., Park, S.-Y.
Deposit date:2000-05-23
Release date:2000-11-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Mutation effects of a conserved threonine (Thr243) of cytochrome P450nor on its structure and function.
J.Inorg.Biochem., 82, 2000
1F25
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CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ASN MUTANTS OF CYTOCHROME P450NOR
Descriptor:NITRIC OXIDE REDUCTASE, PROTOPORPHYRIN IX CONTAINING FE, NITRIC OXIDE, ...
Authors:Shimizu, H., Park, S.-Y.
Deposit date:2000-05-23
Release date:2000-11-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Mutation effects of a conserved threonine (Thr243) of cytochrome P450nor on its structure and function.
J.Inorg.Biochem., 82, 2000
1F26
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CRYSTAL STRUCTURE OF NO COMPLEX OF THR243VAL MUTANTS OF CYTOCHROME P450NOR
Descriptor:NITRIC OXIDE REDUCTASE, PROTOPORPHYRIN IX CONTAINING FE, NITRIC OXIDE, ...
Authors:Shimizu, H., Park, S.-Y.
Deposit date:2000-05-23
Release date:2000-11-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Mutation effects of a conserved threonine (Thr243) of cytochrome P450nor on its structure and function.
J.Inorg.Biochem., 82, 2000
1D06
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STRUCTURAL BASIS OF DIMERIZATION AND SENSORY MECHANISMS OF OXYGEN-SENSING DOMAIN OF RHIZOBIUM MELILOTI FIXL DETERMINED AT 1.4A RESOLUTION
Descriptor:nitrogen fixation regulatory protein fixL, PROTOPORPHYRIN IX CONTAINING FE
Authors:Miyatake, H., Mukai, M., Park, S.-Y., Adachi, S., Tamura, K., Nakamura, H., Nakamura, K., Tsuchiya, T., Iizuka, T., Shiro, Y.
Deposit date:1999-09-09
Release date:2000-03-15
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies
J.MOL.BIOL., 301, 2000
1EW0
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CRYSTAL STRUCTURE ANALYSIS OF THE SENSOR DOMAIN OF RMFIXL(FERROUS FORM)
Descriptor:FIXL, PROTOPORPHYRIN IX CONTAINING FE
Authors:Miyatake, H., Mukai, M., Park, S.-Y., Adachi, S., Tamura, K., Nakamura, H., Nakamura, K., Tsuchiya, T., Iizuka, T., Shiro, Y.
Deposit date:2000-04-21
Release date:2000-05-10
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Sensory mechanism of oxygen sensor FixL from Rhizobium meliloti: crystallographic, mutagenesis and resonance Raman spectroscopic studies
J.MOL.BIOL., 301, 2000
1GED
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A POSITIVE CHARGE ROUTE FOR THE ACCESS OF NADH TO HEME FORMED IN THE DISTAL HEME POCKET OF CYTOCHROME P450NOR
Descriptor:CYTOCHROME P450 55A1, BROMIDE ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kudo, T., Takaya, N., Park, S.-Y., Shiro, Y., Shoun, H.
Deposit date:2000-11-02
Release date:2000-11-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:A positively charged cluster formed in the heme-distal pocket of cytochrome P450nor is essential for interaction with NADH
J.Biol.Chem., 276, 2001
1IT2
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HAGFISH DEOXY HEMOGLOBIN
Descriptor:hemoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Mito, M., Chong, K.T., Park, S.-Y., Tame, J.R.
Deposit date:2002-01-05
Release date:2002-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of deoxy- and carbonmonoxyhemoglobin F1 from the hagfish Eptatretus burgeri
J.Biol.Chem., 277, 2002
1IT3
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HAGFISH CO LIGAND HEMOGLOBIN
Descriptor:hemoglobin, PROTOPORPHYRIN IX CONTAINING FE, CARBON MONOXIDE
Authors:Mito, M., Chong, K.T., Park, S.-Y., Tame, J.R.
Deposit date:2002-01-05
Release date:2002-01-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of deoxy- and carbonmonoxyhemoglobin F1 from the hagfish Eptatretus burgeri
J.Biol.Chem., 277, 2002
1IUJ
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THE STRUCTURE OF TT1380 PROTEIN FROM THERMUS THERMOPHILUS
Descriptor:hypothetical protein TT1380, ZINC ION
Authors:Wada, T., Shirouzu, M., Park, S.-Y., Tame, J.R.H., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-05
Release date:2003-09-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the conserved hypothetical protein TT1380 from Thermus thermophilus HB8
Proteins, 55, 2004
1IWH
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CRYSTAL STRUCTURE OF HORSE CARBONMONOXYHEMOGLOBIN-BEZAFIBRATE COMPLEX AT 1.55A RESOLUTION: A NOVEL ALLOSTERIC BINDING SITE IN R-STATE HEMOGLOBIN
Descriptor:Hemoglobin alpha chain, Hemoglobin beta chain, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Shibayama, N., Miura, S., Tame, J.R.H., Yonetani, T., Park, S.-Y.
Deposit date:2002-05-15
Release date:2002-10-02
Last modified:2011-11-16
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structure of Horse Carbonmonoxyhemoglobin-Bezafibrate Complex at 1.55A Resolution. A Novel Allosteric Binding Site in R-State Hemoglobin
J.BIOL.CHEM., 277, 2002
1IWI
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PUTIDAREDOXIN-BINDING STABLILIZES AN ACTIVE CONFORMER OF CYTOCHROME P450CAM IN ITS REDUCED STATE; CRYSTAL STRUCTURE OF CYTOCHROME P450CAM
Descriptor:CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE, CAMPHOR
Authors:Nagano, S., Shimada, H., Tarumi, A., Hishiki, T., Kimata-Ariga, Y., Egawa, T., Park, S.-Y., Adachi, S., Shiro, Y., Ishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-05-15
Release date:2002-06-05
Last modified:2019-10-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam
Biochemistry, 42, 2003
1IWJ
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PUTIDAREDOXIN-BINDING STABLILIZES AN ACTIVE CONFORMER OF CYTOCHROME P450CAM IN ITS REDUCED STATE; CRYSTAL STRUCTURE OF MUTANT(109K) CYTOCHROME P450CAM
Descriptor:CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE, CAMPHOR
Authors:Nagano, S., Shimada, H., Tarumi, A., Hishiki, T., Kimata-Ariga, Y., Egawa, T., Park, S.-Y., Adachi, S., Shiro, Y., Ishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-05-15
Release date:2002-06-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam
Biochemistry, 42, 2003
1IWK
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PUTIDAREDOXIN-BINDING STABLILIZES AN ACTIVE CONFORMER OF CYTOCHROME P450CAM IN ITS REDUCED STATE; CRYSTAL STRUCTURE OF MUTANT(112K) CYTOCHROME P450CAM
Descriptor:CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE
Authors:Nagano, S., Shimada, H., Tarumi, A., Hishiki, T., Kimata-Ariga, Y., Egawa, T., Park, S.-Y., Adachi, S., Shiro, Y., Ishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-05-15
Release date:2002-06-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam
Biochemistry, 42, 2003
1J3M
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CRYSTAL STRUCTURE OF THE CONSERVED HYPOTHETICAL PROTEIN TT1751 FROM THERMUS THERMOPHILUS HB8
Descriptor:the conserved hypothetical protein TT1751, SULFITE ION
Authors:Kishishita, S., Terada, T., Shirouzu, M., Kuramitsu, S., Park, S.-Y., Tame, R.H., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-02-05
Release date:2004-05-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8
Proteins, 57, 2004