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3KB5
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BU of 3kb5 by Molmil
PRY-SPRY domain of human TRIM72
Descriptor: Tripartite motif-containing protein 72
Authors:Park, E.Y, Kwon, O.-B, Jeong, B.-C, Song, H.K.
Deposit date:2009-10-20
Release date:2009-12-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of PRY-SPRY domain of human TRIM72
Proteins, 2009
2H8G
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BU of 2h8g by Molmil
5'-Methylthioadenosine Nucleosidase from Arabidopsis thaliana
Descriptor: 5'-Methylthioadenosine Nucleosidase, ADENINE
Authors:Park, E.Y, Oh, S.I, Nam, M.J, Shin, J.S, Kim, K.N, Song, H.K.
Deposit date:2006-06-07
Release date:2006-10-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of 5'-methylthioadenosine nucleosidase from Arabidopsis thaliana at 1.5-A resolution
Proteins, 65, 2006
2DS6
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BU of 2ds6 by Molmil
Structure of the ZBD in the tetragonal crystal form
Descriptor: ATP-dependent Clp protease ATP-binding subunit clpX, ZINC ION
Authors:Park, E.Y, Lee, B.G, Hong, S.B, Song, H.K.
Deposit date:2006-06-22
Release date:2007-02-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX.
J.Mol.Biol., 367, 2007
2DS8
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BU of 2ds8 by Molmil
Structure of the ZBD-XB complex
Descriptor: ATP-dependent Clp protease ATP-binding subunit clpX, SspB-tail peptide, ZINC ION
Authors:Park, E.Y, Lee, B.G, Hong, S.B, Kim, H.W, Song, H.K.
Deposit date:2006-06-22
Release date:2007-02-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX.
J.Mol.Biol., 367, 2007
2DS7
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BU of 2ds7 by Molmil
Structure of the ZBD in the hexagonal crystal form
Descriptor: ATP-dependent Clp protease ATP-binding subunit clpX, ZINC ION
Authors:Park, E.Y, Lee, B.G, Hong, S.B, Song, H.K.
Deposit date:2006-06-22
Release date:2007-02-13
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX.
J.Mol.Biol., 367, 2007
2DS5
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BU of 2ds5 by Molmil
Structure of the ZBD in the orthorhomibic crystal from
Descriptor: ATP-dependent Clp protease ATP-binding subunit clpX, CALCIUM ION, TETRAETHYLENE GLYCOL, ...
Authors:Song, H.K, Park, E.Y, Lee, B.G, Hong, S.B.
Deposit date:2006-06-22
Release date:2007-02-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Basis of SspB-tail Recognition by the Zinc Binding Domain of ClpX.
J.Mol.Biol., 367, 2007
1TX6
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BU of 1tx6 by Molmil
trypsin:BBI complex
Descriptor: Bowman-Birk type trypsin inhibitor, CALCIUM ION, Trypsin
Authors:Song, H.K, Park, E.Y, Kim, J.A, Kim, H.W, Kim, Y.S.
Deposit date:2004-07-02
Release date:2005-03-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the Bowman-Birk inhibitor from barley seeds in ternary complex with porcine trypsin
J.Mol.Biol., 343, 2004
3BSF
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BU of 3bsf by Molmil
Crystal Structure of the MTA/SAH nucleosidase
Descriptor: ADENINE, At4g34840
Authors:Song, H.K, Park, E.Y, Choi, W.-S.
Deposit date:2007-12-23
Release date:2009-02-24
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of the MTA/SAH nucleosidase
To be Published
7WLG
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BU of 7wlg by Molmil
Cryo-EM structure of GH31 alpha-1,3-glucosidase from Lactococcus lactis subsp. cremoris
Descriptor: Alpha-xylosidase
Authors:Ikegaya, M, Moriya, T, Adachi, N, Kawasaki, M, Park, E.Y, Miyazaki, T.
Deposit date:2022-01-13
Release date:2022-03-30
Last modified:2022-05-11
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Structural basis of the strict specificity of a bacterial GH31 alpha-1,3-glucosidase for nigerooligosaccharides.
J.Biol.Chem., 298, 2022
1R6L
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BU of 1r6l by Molmil
Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Ribonuclease PH, SULFATE ION
Authors:Choi, J.M, Park, E.Y, Kim, J.H, Chang, S.K, Cho, Y.
Deposit date:2003-10-15
Release date:2004-02-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Probing the functional importance of the hexameric ring structure of RNase PH
J.BIOL.CHEM., 279, 2004
1R6M
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BU of 1r6m by Molmil
Crystal Structure Of The tRNA Processing Enzyme Rnase pH From Pseudomonas Aeruginosa In Complex With Phosphate
Descriptor: PHOSPHATE ION, Ribonuclease PH
Authors:Choi, J.M, Park, E.Y, Kim, J.H, Chang, S.K, Cho, Y.
Deposit date:2003-10-15
Release date:2004-02-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Probing the functional importance of the hexameric ring structure of RNase PH
J.BIOL.CHEM., 279, 2004
5ZOH
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BU of 5zoh by Molmil
Crystal structure of a far-red light-absorbing form of AnPixJg2_BV4 in complex with biliverdin
Descriptor: BILIVERDINE IX ALPHA, GLYCEROL, Methyl-accepting chemotaxis protein
Authors:Miyazaki, T, Fushimi, K, Narikawa, R.
Deposit date:2018-04-13
Release date:2019-04-17
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Rational conversion of chromophore selectivity of cyanobacteriochromes to accept mammalian intrinsic biliverdin.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
7FE4
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BU of 7fe4 by Molmil
Crystal structure of GH65 alpha-1,2-glucosidase from Flavobacterium johnsoniae in complex with glucose
Descriptor: Candidate alpha glycoside phosphorylase Glycoside hydrolase family 65, beta-D-glucopyranose
Authors:Nakamura, S, Miyazaki, T.
Deposit date:2021-07-19
Release date:2021-11-10
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of a bacterial alpha-1,2-glucosidase defines mechanisms of hydrolysis and substrate specificity in GH65 family hydrolases.
J.Biol.Chem., 297, 2021
7FE3
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BU of 7fe3 by Molmil
Crystal structure of GH65 alpha-1,2-glucosidase from Flavobacterium johnsoniae
Descriptor: 1,2-ETHANEDIOL, Candidate alpha glycoside phosphorylase Glycoside hydrolase family 65
Authors:Nakamura, S, Miyazaki, T.
Deposit date:2021-07-19
Release date:2021-11-10
Last modified:2021-12-08
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structure of a bacterial alpha-1,2-glucosidase defines mechanisms of hydrolysis and substrate specificity in GH65 family hydrolases.
J.Biol.Chem., 297, 2021
3KTJ
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BU of 3ktj by Molmil
Structure of ClpP in complex with ADEP2 in monoclinic crystal form
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ATP-dependent Clp protease proteolytic subunit, Acyldepsipeptide 2
Authors:Lee, B.-G, Brotz-Oesterhelt, H, Song, H.K.
Deposit date:2009-11-25
Release date:2010-03-23
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism
Nat.Struct.Mol.Biol., 17, 2010
3KTI
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BU of 3kti by Molmil
Structure of ClpP in complex with ADEP1
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ATP-dependent Clp protease proteolytic subunit, Acyldepsipeptide 1, ...
Authors:Lee, B.-G, Brotz-Oesterhelt, H, Song, H.K.
Deposit date:2009-11-25
Release date:2010-03-23
Last modified:2013-02-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism
Nat.Struct.Mol.Biol., 17, 2010
3KTK
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BU of 3ktk by Molmil
Structure of ClpP in complex with ADEP2 in triclinic crystal form
Descriptor: ATP-dependent Clp protease proteolytic subunit, Acyldepsipeptide 2
Authors:Lee, B.-G, Brotz-Oesterhelt, H, Song, H.K.
Deposit date:2009-11-25
Release date:2010-03-23
Last modified:2012-12-12
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism
Nat.Struct.Mol.Biol., 17, 2010
3KTG
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BU of 3ktg by Molmil
Structure of ClpP from Bacillus subtilis in monoclinic crystal form
Descriptor: ATP-dependent Clp protease proteolytic subunit
Authors:Lee, B.-G, Brotz-Oesterhelt, H, Song, H.K.
Deposit date:2009-11-25
Release date:2010-03-23
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism
Nat.Struct.Mol.Biol., 17, 2010
3KTH
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BU of 3kth by Molmil
Structure of ClpP from Bacillus subtilis in orthorombic crystal form
Descriptor: ATP-dependent Clp protease proteolytic subunit
Authors:Lee, B.-G, Brotz-Oesterhelt, H, Song, H.K.
Deposit date:2009-11-25
Release date:2010-03-23
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structures of ClpP in complex with acyldepsipeptide antibiotics reveal its activation mechanism
Nat.Struct.Mol.Biol., 17, 2010
8IU8
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BU of 8iu8 by Molmil
Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae
Descriptor: Candidate dextranase Glycoside hydrolase family 66, GLYCEROL
Authors:Nakamura, S, Miyazaki, T.
Deposit date:2023-03-24
Release date:2023-06-14
Last modified:2023-07-12
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8IUB
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BU of 8iub by Molmil
Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with isomaltotriose
Descriptor: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, SULFATE ION, ...
Authors:Nakamura, S, Miyazaki, T.
Deposit date:2023-03-24
Release date:2023-06-14
Last modified:2023-07-12
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8IU9
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BU of 8iu9 by Molmil
Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with glucose
Descriptor: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, alpha-D-glucopyranose, ...
Authors:Nakamura, S, Miyazaki, T.
Deposit date:2023-03-24
Release date:2023-06-14
Last modified:2023-07-12
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8IUA
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BU of 8iua by Molmil
Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with isomaltose
Descriptor: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose, ...
Authors:Nakamura, S, Miyazaki, T.
Deposit date:2023-03-24
Release date:2023-06-14
Last modified:2023-07-12
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023
8J50
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BU of 8j50 by Molmil
Crystal structure of Flavihumibacter petaseus GH31 alpha-galactosidase
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, GH31 alpha-galactosidase
Authors:Ikegaya, M, Miyazaki, T.
Deposit date:2023-04-21
Release date:2023-07-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-function analysis of bacterial GH31 alpha-galactosidases specific for alpha-(1→4)-galactobiose.
Febs J., 290, 2023
8IUC
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BU of 8iuc by Molmil
Crystal structure of GH65 alpha-1,2-glucosidase from Flavobacterium johnsoniae in complex with isomaltose
Descriptor: 1,2-ETHANEDIOL, Candidate alpha glycoside phosphorylase Glycoside hydrolase family 65, alpha-D-glucopyranose-(1-6)-beta-D-glucopyranose
Authors:Nakamura, S, Miyazaki, T.
Deposit date:2023-03-24
Release date:2023-06-14
Last modified:2023-07-12
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria.
J.Biol.Chem., 299, 2023

 

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