Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7PVB
DownloadVisualize
BU of 7pvb by Molmil
Structure of Viscotoxin A3 from Viscum Album in the complex with DPC micelles
Descriptor: Viscotoxin-A3
Authors:Paramonov, A.S, Shenkarev, Z.O.
Deposit date:2021-10-01
Release date:2021-12-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Spatial structure and oligomerization of viscotoxin A3 in detergent micelles: Implication for mechanisms of ion channel formation and membrane lysis.
Biochem.Biophys.Res.Commun., 585, 2021
6ZZE
DownloadVisualize
BU of 6zze by Molmil
Structure of the trans-(Tyr39-Pro40) form of the Human Secreted Ly-6/uPAR Related Protein-1 (SLURP-1)
Descriptor: Secreted Ly-6/uPAR-related protein 1
Authors:Paramonov, A.S, Lyukmanova, E.N, Shenkarev, Z.O.
Deposit date:2020-08-04
Release date:2021-01-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Diversity and Dynamics of Human Three-Finger Proteins Acting on Nicotinic Acetylcholine Receptors.
Int J Mol Sci, 21, 2020
6ZZF
DownloadVisualize
BU of 6zzf by Molmil
Structure of the cis-(Tyr39-Pro40) form of the Human Secreted Ly-6/uPAR Related Protein-1 (SLURP-1)
Descriptor: Secreted Ly-6/uPAR-related protein 1
Authors:Paramonov, A.S, Lyukmanova, E.N, Shenkarev, Z.O.
Deposit date:2020-08-04
Release date:2021-01-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Diversity and Dynamics of Human Three-Finger Proteins Acting on Nicotinic Acetylcholine Receptors.
Int J Mol Sci, 21, 2020
2MJ0
DownloadVisualize
BU of 2mj0 by Molmil
Spatial structure of P33A mutant of non-conventional toxin WTX from Naja kaouthia
Descriptor: Weak tryptophan-containing neurotoxin
Authors:Paramonov, A.S, Shenkarev, Z.O, Lyukmanova, E.N.
Deposit date:2013-12-23
Release date:2014-12-24
Method:SOLUTION NMR
Cite:Interaction of Weak Toxin from Naja kaouthia with Muscarinic Acetylcholine Receptors: Mutagenesis, NMR and Modeling Study
To be Published
6IB6
DownloadVisualize
BU of 6ib6 by Molmil
Solution structure of the water-soluble LU-domain of human Lypd6 protein
Descriptor: Ly6/PLAUR domain-containing protein 6
Authors:Tsarev, A.V, Kulbatskii, D.S, Paramonov, A.S, Lyukmanova, E.N, Shenkarev, Z.O.
Deposit date:2018-11-29
Release date:2019-12-18
Last modified:2021-01-13
Method:SOLUTION NMR
Cite:Structural Diversity and Dynamics of Human Three-Finger Proteins Acting on Nicotinic Acetylcholine Receptors.
Int J Mol Sci, 21, 2020
2N99
DownloadVisualize
BU of 2n99 by Molmil
Solution structure of the SLURP-2, a secreted isoform of Lynx1
Descriptor: Ly-6/neurotoxin-like protein 1
Authors:Paramonov, A.S, Shenkarev, Z.O, Lyukmanova, E.N, Arseniev, A.S.
Deposit date:2015-11-11
Release date:2016-09-21
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Secreted Isoform of Human Lynx1 (SLURP-2): Spatial Structure and Pharmacology of Interactions with Different Types of Acetylcholine Receptors.
Sci Rep, 6, 2016
6ZSO
DownloadVisualize
BU of 6zso by Molmil
Solution structure of the water-soluble LU-domain of human Lypd6b protein
Descriptor: Ly6/PLAUR domain-containing protein 6B
Authors:Tsarev, A.V, Kulbatskii, D.S, Paramonov, A.S, Lyukmanova, E.N, Shenkarev, Z.O.
Deposit date:2020-07-16
Release date:2021-01-13
Method:SOLUTION NMR
Cite:Structural Diversity and Dynamics of Human Three-Finger Proteins Acting on Nicotinic Acetylcholine Receptors.
Int J Mol Sci, 21, 2020
6ZSS
DownloadVisualize
BU of 6zss by Molmil
NMR structure of water-soluble domain of human Lynx2 (Lypd1) protein
Descriptor: Ly6/PLAUR domain-containing protein 1
Authors:Kocharovskaya, M.V, Paramonov, A.S, Lyukmanova, E.N, Shenkarev, Z.O.
Deposit date:2020-07-16
Release date:2021-01-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Diversity and Dynamics of Human Three-Finger Proteins Acting on Nicotinic Acetylcholine Receptors.
Int J Mol Sci, 21, 2020
6HN9
DownloadVisualize
BU of 6hn9 by Molmil
Nicomicin-1 -- Novel antimicrobial peptides from the Arctic polychaeta Nicomache minor provide new molecular insight into biological role of the BRICHOS domain
Descriptor: Nicomicin-1
Authors:Panteleev, P.V, Tsarev, A.V, Bolosov, I.A, Paramonov, A.S, Marggraf, M.B, Sychev, S.V, Shenkarev, Z.O, Ovchinnikova, T.V.
Deposit date:2018-09-14
Release date:2018-11-07
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Novel Antimicrobial Peptides from the Arctic PolychaetaNicomache minorProvide New Molecular Insight into Biological Role of the BRICHOS Domain.
Mar Drugs, 16, 2018
8B4R
DownloadVisualize
BU of 8b4r by Molmil
Antimicrobial peptide capitellacin from polychaeta Capitella teleta in DPC (dodecylphosphocholine) micelles, monomeric form
Descriptor: BRICHOS domain-containing protein
Authors:Mironov, P.A, Reznikova, O.V, Paramonov, A.S, Shenkarev, Z.O.
Deposit date:2022-09-21
Release date:2023-10-04
Last modified:2024-04-10
Method:SOLUTION NMR
Cite:Dimerization of the beta-Hairpin Membrane-Active Cationic Antimicrobial Peptide Capitellacin from Marine Polychaeta: An NMR Structural and Thermodynamic Study.
Biomolecules, 14, 2024
8C5J
DownloadVisualize
BU of 8c5j by Molmil
Spatial structure of Lch-alpha peptide from two-component lantibiotic system Lichenicidin VK21
Descriptor: Lantibiotic lichenicidin VK21 A1
Authors:Mineev, K.S, Paramonov, A.S, Arseniev, A.S, Ovchinnikova, T.V, Shenkarev, Z.O.
Deposit date:2023-01-09
Release date:2023-03-22
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Specific Binding of the alpha-Component of the Lantibiotic Lichenicidin to the Peptidoglycan Precursor Lipid II Predetermines Its Antimicrobial Activity.
Int J Mol Sci, 24, 2023
2L8X
DownloadVisualize
BU of 2l8x by Molmil
Spatial structure of antimicrobial peptide Arenicin-2 dimer in DPC micelles
Descriptor: Arenicin-2
Authors:Shenkarev, Z.O, Trunov, K.I, Paramonov, A.S, Arseniev, A.S.
Deposit date:2011-01-27
Release date:2011-12-14
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Molecular mechanism of action of beta-hairpin antimicrobial peptide arenicin: oligomeric structure in dodecylphosphocholine micelles and pore formation in planar lipid bilayers
Biochemistry, 50, 2011
8B4S
DownloadVisualize
BU of 8b4s by Molmil
Antimicrobial peptide capitellacin from polychaeta Capitella teleta in DPC (dodecylphosphocholine) micelles, dimeric form
Descriptor: BRICHOS domain-containing protein
Authors:Mironov, P.A, Reznikova, O.V, Paramonov, A.S, Shenkarev, Z.O.
Deposit date:2022-09-21
Release date:2023-10-04
Last modified:2024-04-10
Method:SOLUTION NMR
Cite:Dimerization of the beta-Hairpin Membrane-Active Cationic Antimicrobial Peptide Capitellacin from Marine Polychaeta: An NMR Structural and Thermodynamic Study.
Biomolecules, 14, 2024
8BWB
DownloadVisualize
BU of 8bwb by Molmil
Spider toxin Pha1b (PnTx3-6) from Phoneutria nigriventer targeting CaV2.x calcium channels and TRPA1 channel
Descriptor: Omega-ctenitoxin-Pn4a
Authors:Mironov, P.A, Chernaya, E.M, Paramonov, A.S, Shenkarev, Z.O.
Deposit date:2022-12-06
Release date:2023-06-21
Last modified:2023-07-05
Method:SOLUTION NMR
Cite:Recombinant Production, NMR Solution Structure, and Membrane Interaction of the Ph alpha 1 beta Toxin, a TRPA1 Modulator from the Brazilian Armed Spider Phoneutria nigriventer .
Toxins, 15, 2023
2M1F
DownloadVisualize
BU of 2m1f by Molmil
NMR Structure of Antiamoebin I (peptaibol antibiotic) bound to DMPC/DHPC bicelles
Descriptor: Antiamoebin I
Authors:Shenkarev, Z.O, Paramonov, A.S, Gizatullina, A.K.
Deposit date:2012-11-27
Release date:2012-12-12
Last modified:2013-10-02
Method:SOLUTION NMR
Cite:Peptaibol antiamoebin I: spatial structure, backbone dynamics, interaction with bicelles and lipid-protein nanodiscs, and pore formation in context of barrel-stave model.
Chem.Biodivers., 10, 2013
2MQU
DownloadVisualize
BU of 2mqu by Molmil
Spatial structure of Hm-3, a membrane-active spider toxin affecting sodium channels
Descriptor: Neurotoxin Hm-3
Authors:Myshkin, M.Y, Shenkarev, Z.O, Paramonov, A.S, Berkut, A.A, Grishin, E.V, Vassilevski, A.A.
Deposit date:2014-06-27
Release date:2014-11-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure of membrane-active toxin from crab spider Heriaeus melloteei suggests parallel evolution of sodium channel gating modifiers in Araneomorphae and Mygalomorphae.
J. Biol. Chem., 290, 2015
2N81
DownloadVisualize
BU of 2n81 by Molmil
Solution Structure of Lipid Transfer Protein From Pea Pisum Sativum
Descriptor: Lipid Transfer Protein
Authors:Paramonov, A.S, Rumynskiy, E.I, Bogdanov, I.V, Finkina, E.I, Melnikova, D.N, Ovchinnikova, T.V, Shenkarev, Z.O, Arseniev, A.S.
Deposit date:2015-09-30
Release date:2016-05-11
Last modified:2017-12-20
Method:SOLUTION NMR
Cite:A novel lipid transfer protein from the pea Pisum sativum: isolation, recombinant expression, solution structure, antifungal activity, lipid binding, and allergenic properties.
BMC Plant Biol, 16

218196

PDB entries from 2024-04-10

PDB statisticsPDBj update infoContact PDBjnumon