Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
7Z28
DownloadVisualize
BU of 7z28 by Molmil
High-resolution crystal structure of ERAP1 with bound bestatin analogue inhibitor
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Giastas, P, Papakyriakou, A, Stratikos, E, Vourloumis, D.
Deposit date:2022-02-26
Release date:2022-07-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Discovery of Selective Nanomolar Inhibitors for Insulin-Regulated Aminopeptidase Based on alpha-Hydroxy-beta-amino Acid Derivatives of Bestatin.
J.Med.Chem., 65, 2022
7ZYF
DownloadVisualize
BU of 7zyf by Molmil
Insulin regulated aminopeptidase (IRAP) in complex with a nanomolar alpha hydroxy beta amino acid based inhibitor.
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Mpakali, A, Stratikos, E, Giastas, P, Papakyriakou, A.
Deposit date:2022-05-24
Release date:2022-07-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Discovery of Selective Nanomolar Inhibitors for Insulin-Regulated Aminopeptidase Based on alpha-Hydroxy-beta-amino Acid Derivatives of Bestatin.
J.Med.Chem., 65, 2022
2HU6
DownloadVisualize
BU of 2hu6 by Molmil
Crystal structure of human MMP-12 in complex with acetohydroxamic acid and a bicyclic inhibitor
Descriptor: (1S,5S,7R)-N~7~-(BIPHENYL-4-YLMETHYL)-N~3~-HYDROXY-6,8-DIOXA-3-AZABICYCLO[3.2.1]OCTANE-3,7-DICARBOXAMIDE, ACETOHYDROXAMIC ACID, CALCIUM ION, ...
Authors:Mannino, C, Nievo, M, Machetti, F, Papakyriakou, A, Calderone, V, Fragai, M, Guarna, A.
Deposit date:2006-07-26
Release date:2006-12-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Synthesis of bicyclic molecular scaffolds (BTAa): an investigation towards new selective MMP-12 inhibitors.
Bioorg.Med.Chem., 14, 2006
5K1V
DownloadVisualize
BU of 5k1v by Molmil
Crystal structure of Endoplasmic Reticulum aminopeptidase 2 (ERAP2) in complex with a diaminobenzoic acid derivative ligand.
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Endoplasmic reticulum aminopeptidase 2, ...
Authors:Saridakis, E, Papakyriakou, A, Giastas, P, Mpakali, A, Mavridis, I.M, Stratikos, E.
Deposit date:2016-05-18
Release date:2017-03-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.897 Å)
Cite:Crystal Structures of ERAP2 Complexed with Inhibitors Reveal Pharmacophore Requirements for Optimizing Inhibitor Potency.
ACS Med Chem Lett, 8, 2017
7BCX
DownloadVisualize
BU of 7bcx by Molmil
The adduct of NAMI-A with Hen Egg White Lysozyme at 8 hours.
Descriptor: CHLORIDE ION, DIMETHYL SULFOXIDE, IMIDAZOLE, ...
Authors:Chiniadis, L, Giastas, P, Bratsos, I, Papakyriakou, A.
Deposit date:2020-12-21
Release date:2021-07-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Insights into the Protein Ruthenation Mechanism by Antimetastatic Metallodrugs: High-Resolution X-ray Structures of the Adduct Formed between Hen Egg-White Lysozyme and NAMI-A at Various Time Points.
Inorg.Chem., 60, 2021
7BDM
DownloadVisualize
BU of 7bdm by Molmil
The adduct of NAMI-A with Hen Egg White Lysozyme at 98 hours.
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme, ...
Authors:Chiniadis, L, Giastas, P, Bratsos, I, Papakyriakou, A.
Deposit date:2020-12-22
Release date:2021-07-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:Insights into the Protein Ruthenation Mechanism by Antimetastatic Metallodrugs: High-Resolution X-ray Structures of the Adduct Formed between Hen Egg-White Lysozyme and NAMI-A at Various Time Points.
Inorg.Chem., 60, 2021
7BD0
DownloadVisualize
BU of 7bd0 by Molmil
The adduct of NAMI-A with Hen Egg White Lysozyme at 26 hours.
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, IMIDAZOLE, ...
Authors:Chiniadis, L, Giastas, P, Bratsos, I, Papakyriakou, A.
Deposit date:2020-12-21
Release date:2021-07-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Insights into the Protein Ruthenation Mechanism by Antimetastatic Metallodrugs: High-Resolution X-ray Structures of the Adduct Formed between Hen Egg-White Lysozyme and NAMI-A at Various Time Points.
Inorg.Chem., 60, 2021
7BCU
DownloadVisualize
BU of 7bcu by Molmil
The adduct of NAMI-A with Hen Egg White Lysozyme at 1.5 hours.
Descriptor: CHLORIDE ION, DIMETHYL SULFOXIDE, IMIDAZOLE, ...
Authors:Chiniadis, L, Giastas, P, Bratsos, I, Papakyriakou, A.
Deposit date:2020-12-21
Release date:2021-07-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Insights into the Protein Ruthenation Mechanism by Antimetastatic Metallodrugs: High-Resolution X-ray Structures of the Adduct Formed between Hen Egg-White Lysozyme and NAMI-A at Various Time Points.
Inorg.Chem., 60, 2021
6TVL
DownloadVisualize
BU of 6tvl by Molmil
Hen Egg White Lysozyme in complex with a "half sandwich"-type Ru(II) coordination compound
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
Authors:Chiniadis, L, Giastas, P, Bratsos, I, Papakyriakou, A.
Deposit date:2020-01-10
Release date:2020-04-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.395 Å)
Cite:High-resolution crystal structures of a "half sandwich"-type Ru(II) coordination compound bound to hen egg-white lysozyme and proteinase K.
J.Biol.Inorg.Chem., 25, 2020
6TXG
DownloadVisualize
BU of 6txg by Molmil
Proteinase K in complex with a "half sandwich"-type Ru(II) coordination compound
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, NITRATE ION, ...
Authors:Chiniadis, L, Giastas, P, Bratsos, I, Papakyriakou, A.
Deposit date:2020-01-14
Release date:2020-04-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.372 Å)
Cite:High-resolution crystal structures of a "half sandwich"-type Ru(II) coordination compound bound to hen egg-white lysozyme and proteinase K.
J.Biol.Inorg.Chem., 25, 2020
5OQF
DownloadVisualize
BU of 5oqf by Molmil
Crystal structure of a single chain trimer composed of the MHC 1 heavy chain H2-Kb WT, beta-2microglobulin, and ovalbumin derived peptide
Descriptor: Beta-2-microglobulin,H-2 class I histocompatibility antigen, K-B alpha chain
Authors:Mikolajek, H, Werner, J.M.
Deposit date:2017-08-11
Release date:2018-04-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:The partial dissociation of MHC class I-bound peptides exposes their N terminus to trimming by endoplasmic reticulum aminopeptidase 1.
J. Biol. Chem., 293, 2018
5OQG
DownloadVisualize
BU of 5oqg by Molmil
Crystal structure of a single chain trimer composed of the MHC I heavy chain H-2Kb W167A, beta-2microglobulin, and and ovalbumin-derived peptide.
Descriptor: Beta-2-microglobulin,H-2 class I histocompatibility antigen, K-B alpha chain
Authors:Mikolajek, H, Werner, J.M.
Deposit date:2017-08-11
Release date:2018-04-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The partial dissociation of MHC class I-bound peptides exposes their N terminus to trimming by endoplasmic reticulum aminopeptidase 1.
J. Biol. Chem., 293, 2018
5OQH
DownloadVisualize
BU of 5oqh by Molmil
Crystal Structure of a disulfide trapped single chain trimer composed of the MHC I heavy chain H-2Kb Y84C K66A mutant, beta-2microglobulin, and ovalbumin-derived peptide
Descriptor: Beta-2-microglobulin,H-2 class I histocompatibility antigen, K-B alpha chain
Authors:Mikolajek, H, Werner, J.M, Beton, M.E.
Deposit date:2017-08-11
Release date:2018-04-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The partial dissociation of MHC class I-bound peptides exposes their N terminus to trimming by endoplasmic reticulum aminopeptidase 1.
J. Biol. Chem., 293, 2018
5OQI
DownloadVisualize
BU of 5oqi by Molmil
Crystal Structure of a disulfide trapped single chain trimer composed of the MHC I heavy chain H-2Kb Y84C E63A mutant, beta-2microglobulin, and ovalbumin-derived peptide
Descriptor: Beta-2-microglobulin,H-2 class I histocompatibility antigen, K-B alpha chain
Authors:Mikolajek, H, Werner, J.M, Beton, M.E.
Deposit date:2017-08-11
Release date:2018-04-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The partial dissociation of MHC class I-bound peptides exposes their N terminus to trimming by endoplasmic reticulum aminopeptidase 1.
J. Biol. Chem., 293, 2018
6HBY
DownloadVisualize
BU of 6hby by Molmil
HLA class II peptide flanking residues tune the immunogenicity of a human tumor-derived epitope
Descriptor: 1,2-ETHANEDIOL, ARRPPLAELAALNLSGSRL 5T4 tumour epitope, HLA class II histocompatibility antigen, ...
Authors:MacLachlan, B, Rizkallah, P.J, Sewell, A.K, Cole, D.K, Godkin, A.J.
Deposit date:2018-08-13
Release date:2019-08-14
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Human leukocyte antigen (HLA) class II peptide flanking residues tune the immunogenicity of a human tumor-derived epitope.
J.Biol.Chem., 294, 2019
4E36
DownloadVisualize
BU of 4e36 by Molmil
Crystal structure of the human Endoplasmic Reticulum Aminopeptidase 2 variant N392K
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Birtley, J.R, Saridakis, E, Pegias, P, Stratikos, E, Mavridis, I.M.
Deposit date:2012-03-09
Release date:2012-08-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.22 Å)
Cite:A common single nucleotide polymorphism in endoplasmic reticulum aminopeptidase 2 induces a specificity switch that leads to altered antigen processing.
J.Immunol., 189, 2012
5J6S
DownloadVisualize
BU of 5j6s by Molmil
Crystal structure of Endoplasmic Reticulum Aminopeptidase 2 (ERAP2) in complex with a hydroxamic derivative ligand
Descriptor: (2S)-N~1~-benzyl-2-[(4-fluorophenyl)methyl]-N~3~-hydroxypropanediamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Saridakis, E, Giastas, P, Mpakali, A, Deprez-Poulain, R, Stratikos, E.
Deposit date:2016-04-05
Release date:2017-03-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structures of ERAP2 Complexed with Inhibitors Reveal Pharmacophore Requirements for Optimizing Inhibitor Potency.
ACS Med Chem Lett, 8, 2017
4Z7I
DownloadVisualize
BU of 4z7i by Molmil
Crystal structure of insulin regulated aminopeptidase in complex with ligand
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DG025 transition-state analogue enzyme inhibitor, ...
Authors:Mpakali, A, Saridakis, E, Harlos, K, Zhao, Y, Stratikos, E.
Deposit date:2015-04-07
Release date:2015-08-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.31 Å)
Cite:Crystal Structure of Insulin-Regulated Aminopeptidase with Bound Substrate Analogue Provides Insight on Antigenic Epitope Precursor Recognition and Processing.
J Immunol., 195, 2015
5C97
DownloadVisualize
BU of 5c97 by Molmil
Insulin regulated aminopeptidase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Leucyl-cystinyl aminopeptidase, ...
Authors:Mpakali, A, Saridakis, E, Harlos, K, Zhao, Y, Stratikos, E.
Deposit date:2015-06-26
Release date:2015-08-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.37 Å)
Cite:Crystal Structure of Insulin-Regulated Aminopeptidase with Bound Substrate Analogue Provides Insight on Antigenic Epitope Precursor Recognition and Processing.
J Immunol., 195, 2015
4HJ2
DownloadVisualize
BU of 4hj2 by Molmil
Crystal Structure Analysis of GSTA1-1 in complex with chlorambucil
Descriptor: Glutathione S-transferase A1, L-gamma-glutamyl-S-(2-{[4-(3-carboxypropyl)phenyl](2-chloroethyl)amino}ethyl)-L-cysteinylglycine
Authors:Karpusas, M, Chiniadis, L, Labrou, N.E.
Deposit date:2012-10-12
Release date:2013-03-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The interaction of the chemotherapeutic drug chlorambucil with human glutathione transferase A1-1: kinetic and structural analysis.
Plos One, 8, 2013
6HY7
DownloadVisualize
BU of 6hy7 by Molmil
Crystal structure of alpha9 nAChR extracellular domain in complex with alpha-conotoxin RgIA
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-conotoxin RgIA, ...
Authors:Giastas, P, Zouridakis, M.
Deposit date:2018-10-19
Release date:2019-05-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Crystal Structure of the Monomeric Extracellular Domain of alpha 9 Nicotinic Receptor Subunit in Complex With alpha-Conotoxin RgIA: Molecular Dynamics Insights Into RgIA Binding to alpha 9 alpha 10 Nicotinic Receptors.
Front Pharmacol, 10, 2019
8A5U
DownloadVisualize
BU of 8a5u by Molmil
Crystal structure of the beta3 subunit extracellular domain of nicotinic acetylcholine receptor
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, BICINE, ...
Authors:Giastas, P, Zouridakis, M.
Deposit date:2022-06-16
Release date:2022-08-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Insights into the Role of beta 3 nAChR Subunit in the Activation of Nicotinic Receptors.
Molecules, 27, 2022
6RQX
DownloadVisualize
BU of 6rqx by Molmil
High-resolution crystal structure of ERAP1 in complex with 10mer phosphinic peptide
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Giastas, P, Stratikos, E.
Deposit date:2019-05-16
Release date:2019-12-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Mechanism for antigenic peptide selection by endoplasmic reticulum aminopeptidase 1.
Proc.Natl.Acad.Sci.USA, 2019
6RYF
DownloadVisualize
BU of 6ryf by Molmil
High-resolution crystal structure of ERAP1 in complex with 15mer phosphinic peptide
Descriptor: 1,2-ETHANEDIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Giastas, P, Stratikos, E.
Deposit date:2019-06-10
Release date:2019-12-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Mechanism for antigenic peptide selection by endoplasmic reticulum aminopeptidase 1.
Proc.Natl.Acad.Sci.USA, 2019
6SEQ
DownloadVisualize
BU of 6seq by Molmil
Lemur tyrosine kinase 3 (LMTK3)
Descriptor: Serine/threonine-protein kinase LMTK3
Authors:Roe, S.M, Owen, R.
Deposit date:2019-07-30
Release date:2020-11-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The structure-function relationship of oncogenic LMTK3.
Sci Adv, 6, 2020

 

12>

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon