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4YZO
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BU of 4yzo by Molmil
Crystal Structure Analysis of Thiolase-like protein, ST0096 from Sulfolobus Tokodaii
Descriptor: ACETATE ION, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Padmanabhan, B, Manjula, R, Yokoyama, S, Bessho, Y.
Deposit date:2015-03-25
Release date:2016-03-30
Last modified:2020-02-19
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure Analysis of Thiolase-like protein, ST0096 from Sulfolobus Tokodaii
To Be Published
8H1I
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BU of 8h1i by Molmil
Crystal structure of PlyGRCS, a bacteriophage Endolysin in complex with Cold shock protein C
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Cold shock-like protein CspC, ...
Authors:Padmanabhan, B, Gopinatha, K, Mandal, M, Saranya, G, Sudhagar, B.
Deposit date:2022-10-03
Release date:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of PlyGRCS, a bacteriophage Endolysin in complex with Cold shock protein C
To Be Published
7EXI
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BU of 7exi by Molmil
Crystal structure of the BTB domain human Keap1
Descriptor: Kelch-like ECH-associated protein 1
Authors:Padmanabhan, B, Deshmukh, P, Gopinath, K, Unni, S.
Deposit date:2021-05-27
Release date:2021-12-01
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Crystal structure of the BTB domain human Keap1
To Be Published
1IMJ
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BU of 1imj by Molmil
CRYSTAL STRUCTURE OF THE HUMAN CCG1/TAFII250-INTERACTING FACTOR B (CIB)
Descriptor: CCG1-INTERACTING FACTOR B, SULFATE ION
Authors:Padmanabhan, B, Kuzuhara, T, Horikoshi, M.
Deposit date:2001-05-11
Release date:2002-05-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of CCG1/TAF(II)250-interacting factor B (CIB)
J.Biol.Chem., 279, 2004
2YXD
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BU of 2yxd by Molmil
Crystal Structure of Cobalamin biosynthesis precorrin 8W decarboxylase (cbiT)
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating], SULFATE ION
Authors:Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Cobalamin biosynthesis precorrin 8W decarboxylase (cbiT)
To be Published
2YXH
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BU of 2yxh by Molmil
Crystal structure of mazG-related protein from Thermotoga maritima
Descriptor: MAGNESIUM ION, MazG-related protein
Authors:Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2007-10-30
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of mazG-related protein from Thermotoga maritima
To be Published
2YXG
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BU of 2yxg by Molmil
Crystal structure of Dihyrodipicolinate Synthase (dapA)
Descriptor: Dihydrodipicolinate synthase
Authors:Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2007-10-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of dihydrodipicolinate synthase from Methanocaldococcus jannaschii.
Acta Crystallogr.,Sect.F, 65, 2009
2YXE
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BU of 2yxe by Molmil
Crystal structure of L-isoaspartyl protein carboxyl methyltranferase
Descriptor: ACETATE ION, Protein-L-isoaspartate O-methyltransferase
Authors:Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2007-10-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of L-isoaspartyl protein carboxyl methyltranferase
To be Published
2Z32
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BU of 2z32 by Molmil
Crystal structure of Keap1 complexed with Prothymosin alpha
Descriptor: Kelch-like ECH-associated protein 1, Prothymosin alpha, SULFATE ION
Authors:Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-31
Release date:2008-03-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural analysis of the complex of Keap1 with a prothymosin alpha peptide
Acta Crystallogr.,Sect.F, 64, 2008
2ZG6
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BU of 2zg6 by Molmil
Crystal structure of Hypothetical protein; probable 2-haloalkanoic acid dehalogenase from Sulfolobus tokodaii
Descriptor: Putative uncharacterized protein ST2620
Authors:Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-01-18
Release date:2008-07-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of Hypothetical protein; probable 2-haloalkanoic acid dehalogenase from Sulfolobus tokodaii
To be Published
2ZAD
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BU of 2zad by Molmil
Crystal Structure of Muconate Cycloisomerase from Thermotoga maritima MSB8
Descriptor: DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, Muconate cycloisomerase, ...
Authors:Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-10-03
Release date:2008-04-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Muconate Cycloisomerase from Thermotoga maritima MSB8
To be Published
2ZGI
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BU of 2zgi by Molmil
Crystal Structure of Putative 4-amino-4-deoxychorismate lyase
Descriptor: DI(HYDROXYETHYL)ETHER, PYRIDOXAL-5'-PHOSPHATE, Putative 4-amino-4-deoxychorismate lyase, ...
Authors:Padmanabhan, B, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-01-22
Release date:2008-07-22
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structure of putative 4-amino-4-deoxychorismate lyase from Thermus thermophilus HB8.
Acta Crystallogr.,Sect.F, 65, 2009
1X2J
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BU of 1x2j by Molmil
Structural basis for the defects of human lung cancer somatic mutations in the repression activity of Keap1 on Nrf2
Descriptor: Kelch-like ECH-associated protein 1, SULFATE ION
Authors:Padmanabhan, B, Tong, K.I, Nakamura, Y, Ohta, T, Scharlock, M, Kobayashi, A, Ohtsuji, M, Kang, M.-I, Yamamoto, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-04-25
Release date:2006-03-07
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for defects of keap1 activity provoked by its point mutations in lung cancer
Mol.Cell, 21, 2006
1X2R
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BU of 1x2r by Molmil
Structural basis for the defects of human lung cancer somatic mutations in the repression activity of Keap1 on Nrf2
Descriptor: Kelch-like ECH-associated protein 1, Nuclear factor erythroid 2 related factor 2, SULFATE ION
Authors:Padmanabhan, B, Tong, K.I, Nakamura, Y, Ohta, T, Scharlock, M, Kobayashi, A, Ohtsuji, M, Kang, M.-I, Yamamoto, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-04-26
Release date:2006-03-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for defects of keap1 activity provoked by its point mutations in lung cancer
Mol.Cell, 21, 2006
1WG3
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BU of 1wg3 by Molmil
Structural analysis of yeast nucleosome-assembly factor CIA1p
Descriptor: Anti-silencing protein 1
Authors:Padmanabhan, B, Kataoka, K, Umehara, T, Adachi, N, Yokoyama, S, Horikoshi, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-27
Release date:2005-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Similarity between Histone Chaperone Cia1p/Asf1p and DNA-Binding Protein NF-{kappa}B
J.Biochem.(Tokyo), 138, 2005
2DWW
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BU of 2dww by Molmil
Crystal structure of Bromodomain-containing protein 4
Descriptor: Bromodomain-containing protein 4, CHLORIDE ION
Authors:Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-21
Release date:2007-08-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Bromodomain-containing protein 4
To be Published
2DVV
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BU of 2dvv by Molmil
Crystal structure of the second bromodomain of the human Brd2 protein
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Bromodomain-containing protein 2
Authors:Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-01
Release date:2007-08-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the second bromodomain of the human Brd2 protein
To be Published
2E3K
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BU of 2e3k by Molmil
Crystal structure of the human Brd2 second bromodomain in complexed with the acetylated histone H4 peptide
Descriptor: 15-mer peptide from Histone H4, Bromodomain-containing protein 2
Authors:Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-11-27
Release date:2007-12-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for diacetylated histone H4 tail recognition by the second bromodomain of human BRD2
To be Published
2DZE
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BU of 2dze by Molmil
Crystal structure of histone chaperone Asf1 in complex with a C-terminus of histone H3
Descriptor: 10-mer peptide from Histone H3.1/H3.2, Histone chaperone cia1, TRIETHYLENE GLYCOL
Authors:Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-28
Release date:2007-10-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of histone chaperone Asf1 in complex with a C-terminus of histone H3
To be Published
1IXV
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BU of 1ixv by Molmil
Crystal Structure Analysis of homolog of oncoprotein gankyrin, an interactor of Rb and CDK4/6
Descriptor: Probable 26S proteasome regulatory subunit p28
Authors:Padmanabhan, B, Adachi, N, Kataoka, K, Horikoshi, M.
Deposit date:2002-07-09
Release date:2003-12-16
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the homolog of the oncoprotein gankyrin, an interactor of Rb and CDK4/6
J.BIOL.CHEM., 279, 2004
1KP0
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BU of 1kp0 by Molmil
The Crystal Structure Analysis of Creatine Amidinohydrolase from Actinobacillus
Descriptor: CREATINE AMIDINOHYDROLASE
Authors:Padmanabhan, B, Paehler, A, Horikoshi, M.
Deposit date:2001-12-26
Release date:2002-07-31
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of creatine amidinohydrolase from Actinobacillus.
Acta Crystallogr.,Sect.D, 58, 2002
7C5E
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BU of 7c5e by Molmil
Crystal structure of Keap1 in complex with fumarate (FUM)
Descriptor: ACETATE ION, FUMARIC ACID, Kelch-like ECH-associated protein 1, ...
Authors:Padmanabhan, B, Unni, S, Deshmukh, P.
Deposit date:2020-05-19
Release date:2020-08-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural insights into the multiple binding modes of Dimethyl Fumarate (DMF) and its analogs to the Kelch domain of Keap1.
Febs J., 288, 2021
6JKE
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BU of 6jke by Molmil
Discovery and the crystal structure of NS5 in complex with the N-terminal bromodomain of BRD2.
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 7-chloranyl-2-[(3-chlorophenyl)amino]pyrano[3,4-e][1,3]oxazine-4,5-dione, Bromodomain-containing protein 2, ...
Authors:Padmanabhan, B, Mathur, S, Deshmukh, P.
Deposit date:2019-02-28
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Novel pyrano 1,3 oxazine based ligand inhibits the epigenetic reader hBRD2 in glioblastoma.
Biochem.J., 477, 2020
6LRZ
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BU of 6lrz by Molmil
Crystal structure of Keap1 in complex with dimethyl fumarate (DMF)
Descriptor: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, ACETATE ION, Keap1-DC, ...
Authors:Padmanabhan, B, Unni, S, Deshmukh, P.
Deposit date:2020-01-16
Release date:2020-08-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structural insights into the multiple binding modes of Dimethyl Fumarate (DMF) and its analogs to the Kelch domain of Keap1.
Febs J., 288, 2021
7ENZ
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BU of 7enz by Molmil
Crystal structure of Phenanthredinone moiety in complex with the second bromodomain of BRD2 (BRD2-BD2).
Descriptor: Bromodomain-containing protein 2, TRIETHYLENE GLYCOL, phenanthridin-6(5H)-one
Authors:Padmanabhan, B, Arole, A, Deshmukh, P, Ashok, S.
Deposit date:2021-04-21
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural investigation of a pyrano-1,3-oxazine derivative and the phenanthridinone core moiety against BRD2 bromodomains.
Acta Crystallogr.,Sect.F, 78, 2022

 

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