Author results

1IMJ
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CRYSTAL STRUCTURE OF THE HUMAN CCG1/TAFII250-INTERACTING FACTOR B (CIB)
Descriptor:CCG1-INTERACTING FACTOR B, SULFATE ION
Authors:Padmanabhan, B., Kuzuhara, T., Horikoshi, M.
Deposit date:2001-05-11
Release date:2002-05-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of CCG1/TAF(II)250-interacting factor B (CIB)
J.Biol.Chem., 279, 2004
1IXV
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CRYSTAL STRUCTURE ANALYSIS OF HOMOLOG OF ONCOPROTEIN GANKYRIN, AN INTERACTOR OF RB AND CDK4/6
Descriptor:Probable 26S proteasome regulatory subunit p28
Authors:Padmanabhan, B., Adachi, N., Kataoka, K., Horikoshi, M.
Deposit date:2002-07-09
Release date:2003-12-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the homolog of the oncoprotein gankyrin, an interactor of Rb and CDK4/6
J.BIOL.CHEM., 279, 2004
1KP0
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THE CRYSTAL STRUCTURE ANALYSIS OF CREATINE AMIDINOHYDROLASE FROM ACTINOBACILLUS
Descriptor:CREATINE AMIDINOHYDROLASE
Authors:Padmanabhan, B., Paehler, A., Horikoshi, M.
Deposit date:2001-12-26
Release date:2002-07-31
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of creatine amidinohydrolase from Actinobacillus.
Acta Crystallogr.,Sect.D, 58, 2002
1WG3
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STRUCTURAL ANALYSIS OF YEAST NUCLEOSOME-ASSEMBLY FACTOR CIA1P
Descriptor:Anti-silencing protein 1
Authors:Padmanabhan, B., Kataoka, K., Umehara, T., Adachi, N., Yokoyama, S., Horikoshi, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-27
Release date:2005-06-14
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Similarity between Histone Chaperone Cia1p/Asf1p and DNA-Binding Protein NF-{kappa}B
J.Biochem.(Tokyo), 138, 2005
1X2J
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STRUCTURAL BASIS FOR THE DEFECTS OF HUMAN LUNG CANCER SOMATIC MUTATIONS IN THE REPRESSION ACTIVITY OF KEAP1 ON NRF2
Descriptor:Kelch-like ECH-associated protein 1, SULFATE ION
Authors:Padmanabhan, B., Tong, K.I., Nakamura, Y., Ohta, T., Scharlock, M., Kobayashi, A., Ohtsuji, M., Kang, M.-I., Yamamoto, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-04-25
Release date:2006-03-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for defects of keap1 activity provoked by its point mutations in lung cancer
Mol.Cell, 21, 2006
1X2R
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STRUCTURAL BASIS FOR THE DEFECTS OF HUMAN LUNG CANCER SOMATIC MUTATIONS IN THE REPRESSION ACTIVITY OF KEAP1 ON NRF2
Descriptor:Kelch-like ECH-associated protein 1, Nuclear factor erythroid 2 related factor 2, SULFATE ION
Authors:Padmanabhan, B., Tong, K.I., Nakamura, Y., Ohta, T., Scharlock, M., Kobayashi, A., Ohtsuji, M., Kang, M.-I., Yamamoto, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-04-26
Release date:2006-03-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for defects of keap1 activity provoked by its point mutations in lung cancer
Mol.Cell, 21, 2006
2DVV
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CRYSTAL STRUCTURE OF THE SECOND BROMODOMAIN OF THE HUMAN BRD2 PROTEIN
Descriptor:Bromodomain-containing protein 2, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
Authors:Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-01
Release date:2007-08-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the second bromodomain of the human Brd2 protein
To be Published
2DWW
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CRYSTAL STRUCTURE OF BROMODOMAIN-CONTAINING PROTEIN 4
Descriptor:Bromodomain-containing protein 4, CHLORIDE ION
Authors:Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-21
Release date:2007-08-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Bromodomain-containing protein 4
To be Published
2DZE
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CRYSTAL STRUCTURE OF HISTONE CHAPERONE ASF1 IN COMPLEX WITH A C-TERMINUS OF HISTONE H3
Descriptor:Histone chaperone cia1, 10-mer peptide from Histone H3.1/H3.2, TRIETHYLENE GLYCOL
Authors:Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-28
Release date:2007-10-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of histone chaperone Asf1 in complex with a C-terminus of histone H3
To be Published
2E3K
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CRYSTAL STRUCTURE OF THE HUMAN BRD2 SECOND BROMODOMAIN IN COMPLEXED WITH THE ACETYLATED HISTONE H4 PEPTIDE
Descriptor:Bromodomain-containing protein 2, 15-mer peptide from Histone H4
Authors:Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-11-27
Release date:2007-12-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for diacetylated histone H4 tail recognition by the second bromodomain of human BRD2
To be Published
2YXD
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CRYSTAL STRUCTURE OF COBALAMIN BIOSYNTHESIS PRECORRIN 8W DECARBOXYLASE (CBIT)
Descriptor:Probable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating], SULFATE ION, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
Authors:Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Cobalamin biosynthesis precorrin 8W decarboxylase (cbiT)
To be Published
2YXE
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CRYSTAL STRUCTURE OF L-ISOASPARTYL PROTEIN CARBOXYL METHYLTRANFERASE
Descriptor:Protein-L-isoaspartate O-methyltransferase, ACETATE ION
Authors:Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of L-isoaspartyl protein carboxyl methyltranferase
To be Published
2YXG
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CRYSTAL STRUCTURE OF DIHYRODIPICOLINATE SYNTHASE (DAPA)
Descriptor:Dihydrodipicolinate synthase
Authors:Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of dihydrodipicolinate synthase from Methanocaldococcus jannaschii.
Acta Crystallogr.,Sect.F, 65, 2009
2YXH
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CRYSTAL STRUCTURE OF MAZG-RELATED PROTEIN FROM THERMOTOGA MARITIMA
Descriptor:MazG-related protein, MAGNESIUM ION
Authors:Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-26
Release date:2007-10-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of mazG-related protein from Thermotoga maritima
To be Published
2Z32
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CRYSTAL STRUCTURE OF KEAP1 COMPLEXED WITH PROTHYMOSIN ALPHA
Descriptor:Kelch-like ECH-associated protein 1, Prothymosin alpha, SULFATE ION
Authors:Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-31
Release date:2008-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural analysis of the complex of Keap1 with a prothymosin alpha peptide
Acta Crystallogr.,Sect.F, 64, 2008
2ZAD
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CRYSTAL STRUCTURE OF MUCONATE CYCLOISOMERASE FROM THERMOTOGA MARITIMA MSB8
Descriptor:Muconate cycloisomerase, MANGANESE (II) ION, PENTAETHYLENE GLYCOL, ...
Authors:Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-10-03
Release date:2008-04-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Muconate Cycloisomerase from Thermotoga maritima MSB8
To be Published
2ZG6
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CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN; PROBABLE 2-HALOALKANOIC ACID DEHALOGENASE FROM SULFOLOBUS TOKODAII
Descriptor:Putative uncharacterized protein ST2620
Authors:Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-01-18
Release date:2008-07-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of Hypothetical protein; probable 2-haloalkanoic acid dehalogenase from Sulfolobus tokodaii
To be Published
2ZGI
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CRYSTAL STRUCTURE OF PUTATIVE 4-AMINO-4-DEOXYCHORISMATE LYASE
Descriptor:Putative 4-amino-4-deoxychorismate lyase, SULFATE ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Padmanabhan, B., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-01-22
Release date:2008-07-22
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structure of putative 4-amino-4-deoxychorismate lyase from Thermus thermophilus HB8.
Acta Crystallogr.,Sect.F, 65, 2009
4YZO
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CRYSTAL STRUCTURE ANALYSIS OF THIOLASE-LIKE PROTEIN, ST0096 FROM SULFOLOBUS TOKODAII
Descriptor:Putative acyl-CoA acyltransferase, DI(HYDROXYETHYL)ETHER, IMIDAZOLE, ...
Authors:Padmanabhan, B., Manjula, R., Yokoyama, S., Bessho, Y.
Deposit date:2015-03-25
Release date:2016-03-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal Structure Analysis of Thiolase-like protein, ST0096 from Sulfolobus Tokodaii
To Be Published
5XHE
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CRYSTAL STRUCTURE ANALYSIS OF THE SECOND BROMODOMAIN OF BRD2 COVALENTLY LINKED TO B-MERCAPTOETHANOL
Descriptor:Bromodomain-containing protein 2, TRIETHYLENE GLYCOL, GLYCEROL
Authors:Padmanabhan, B., Mathur, S., Tripathi, S.K., Deshmukh, P.
Deposit date:2017-04-20
Release date:2017-09-06
Last modified:2018-08-01
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Insights into the crystal structure of BRD2-BD2 - phenanthridinone complex and theoretical studies on phenanthridinone analogs.
J. Biomol. Struct. Dyn., 36, 2018
5XHK
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CRYSTAL STRUCTURE OF THE BRD2-BD2 IN COMPLEX WITH PHENANTHRIDINONE
Descriptor:Bromodomain-containing protein 2, GLYCEROL, METHOXYETHANE, ...
Authors:Padmanabhan, B., Mathur, S., Tripathi, S., Deshmukh, P.
Deposit date:2017-04-21
Release date:2017-09-06
Last modified:2018-08-01
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Insights into the crystal structure of BRD2-BD2 - phenanthridinone complex and theoretical studies on phenanthridinone analogs.
J. Biomol. Struct. Dyn., 36, 2018
2CU9
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CRYSTAL STRUCTURE OF HISTONE CHAPERONE CIA1
Descriptor:Histone chaperone cia1, 2-(2-METHOXYETHOXY)ETHANOL
Authors:Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-25
Release date:2006-08-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of Fission Yeast Histone Chaperone Asf1 Complexed with the Hip1 B-domain or the Cac2 C Terminus
J.Biol.Chem., 283, 2008
2DWZ
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STRUCTURE OF THE ONCOPROTEIN GANKYRIN IN COMPLEX WITH S6 ATPASE OF THE 26S PROTEASOME
Descriptor:26S proteasome non-ATPase regulatory subunit 10, 26S protease regulatory subunit 6B, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
Authors:Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-22
Release date:2007-08-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
To be Published
2DX8
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CRYSTAL STRUCTURE ANALYSIS OF THE PHD DOMAIN OF THE TRANSCRIPTION COACTIVATOR PYGOPHUS
Descriptor:Pygopus homolog 1, ZINC ION
Authors:Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-08-24
Release date:2007-05-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structure Analysis of the PHD Domain of the Transcription Coactivator Pygopus
To be Published
2DYH
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CRYSTAL STRUCTURE OF THE KEAP1 PROTEIN IN COMPLEXED WITH THE N-TERMINAL REGION OF THE NRF2 TRANSCRIPTION FACTOR
Descriptor:Kelch-like ECH-associated protein 1, Nrf2/Neh2 peptide from Nuclear factor erythroid 2-related factor 2, SULFATE ION
Authors:Padmanabhan, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-14
Release date:2007-09-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Different electrostatic potentials define ETGE and DLG motifs as hinge and latch in oxidative stress response
Mol.Cell.Biol., 27, 2007
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