Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6MJP
DownloadVisualize
BU of 6mjp by Molmil
LptB(E163Q)FGC from Vibrio cholerae
Descriptor: 2-(2-ETHOXYETHOXY)ETHANOL, 6-cyclohexylhexyl beta-D-glucopyranoside, ABC transporter ATP-binding protein, ...
Authors:Owens, T.W, Kahne, D, Kruse, A.C.
Deposit date:2018-09-21
Release date:2019-03-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structural basis of unidirectional export of lipopolysaccharide to the cell surface.
Nature, 567, 2019
6MIT
DownloadVisualize
BU of 6mit by Molmil
LptBFGC from Enterobacter cloacae
Descriptor: CHLORIDE ION, LPS export ABC transporter permease LptF, Lipopolysaccharide export system ATP-binding protein, ...
Authors:Owens, T.W, Kahne, D, Kruse, A.C.
Deposit date:2018-09-20
Release date:2019-03-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis of unidirectional export of lipopolysaccharide to the cell surface.
Nature, 567, 2019
6U0O
DownloadVisualize
BU of 6u0o by Molmil
Crystal structure of a peptidoglycan release complex, SagB-SpdC, in lipidic cubic phase
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-(2-ETHOXYETHOXY)ETHANOL, CITRATE ANION, ...
Authors:Owens, T.W, Schaefer, K, Kahne, D, Walker, S.
Deposit date:2019-08-14
Release date:2020-09-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure and reconstitution of a hydrolase complex that may release peptidoglycan from the membrane after polymerization.
Nat Microbiol, 6, 2021
6MBN
DownloadVisualize
BU of 6mbn by Molmil
LptB E163Q in complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, Lipopolysaccharide export system ATP-binding protein LptB, ...
Authors:Owens, T.W, Ruiz, N, Kahne, D.
Deposit date:2018-08-30
Release date:2019-08-14
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.957 Å)
Cite:Combining Mutations That Inhibit Two Distinct Steps of the ATP Hydrolysis Cycle Restores Wild-Type Function in the Lipopolysaccharide Transporter and Shows that ATP Binding Triggers Transport.
Mbio, 10, 2019
6MPT
DownloadVisualize
BU of 6mpt by Molmil
TagT bound to LI-WTA
Descriptor: 2-(acetylamino)-2-deoxy-1-O-[(S)-{[(R)-{[(2Z,6Z,10E,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-alpha-D-glucopyranose, CHLORIDE ION, Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagT
Authors:Owens, T.W, Schaefer, K, Kahne, D, Walker, S.
Deposit date:2018-10-08
Release date:2018-10-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.649 Å)
Cite:Substrate Preferences Establish the Order of Cell Wall Assembly in Staphylococcus aureus.
J. Am. Chem. Soc., 140, 2018
6MPS
DownloadVisualize
BU of 6mps by Molmil
TagT bound to LIIa-WTA
Descriptor: 2-(acetylamino)-4-O-[2-(acetylamino)-2-deoxy-beta-D-mannopyranosyl]-2-deoxy-1-O-[(S)-{[(R)-{[(2Z,6Z,10Z,14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaen-1-yl]oxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-alpha-D-glucopyranose, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Owens, T.W, Schaefer, K, Kahne, D, Walker, S.
Deposit date:2018-10-08
Release date:2018-10-17
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Substrate Preferences Establish the Order of Cell Wall Assembly in Staphylococcus aureus.
J. Am. Chem. Soc., 140, 2018
6P26
DownloadVisualize
BU of 6p26 by Molmil
Escherichia coli tRNA synthetase in complex with compound 1
Descriptor: N-benzyl-2-(cyclohex-1-en-1-yl)ethan-1-amine, Phenylalanine--tRNA ligase alpha subunit, Phenylalanine--tRNA ligase beta subunit
Authors:Kahne, D, Baidin, V, Owens, T.W.
Deposit date:2019-05-21
Release date:2020-11-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.16 Å)
Cite:Simple Secondary Amines Inhibit Growth of Gram-Negative Bacteria through Highly Selective Binding to Phenylalanyl-tRNA Synthetase.
J.Am.Chem.Soc., 143, 2021
6P24
DownloadVisualize
BU of 6p24 by Molmil
Escherichia coli tRNA synthetase
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
Authors:Kahne, D, Baidin, V, Owens, T.W.
Deposit date:2019-05-20
Release date:2020-11-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Simple Secondary Amines Inhibit Growth of Gram-Negative Bacteria through Highly Selective Binding to Phenylalanyl-tRNA Synthetase.
J.Am.Chem.Soc., 143, 2021
6OZ5
DownloadVisualize
BU of 6oz5 by Molmil
Escherichia coli tRNA synthetase in complex with compound 3
Descriptor: 1,2-ETHANEDIOL, 2-({[(2S)-1-cyclohexylpropan-2-yl]amino}methyl)phenol, DI(HYDROXYETHYL)ETHER, ...
Authors:Kahne, D, Baidin, V, Owens, T.W.
Deposit date:2019-05-15
Release date:2020-11-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Simple Secondary Amines Inhibit Growth of Gram-Negative Bacteria through Highly Selective Binding to Phenylalanyl-tRNA Synthetase.
J.Am.Chem.Soc., 143, 2021
6P8T
DownloadVisualize
BU of 6p8t by Molmil
Acinetobacter baumannii tRNA synthetase in complex with compound 1
Descriptor: MAGNESIUM ION, N-benzyl-2-(cyclohex-1-en-1-yl)ethan-1-amine, Phenylalanine--tRNA ligase alpha subunit, ...
Authors:Kahne, D, Baidin, V, Owens, T.W.
Deposit date:2019-06-07
Release date:2020-11-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Simple Secondary Amines Inhibit Growth of Gram-Negative Bacteria through Highly Selective Binding to Phenylalanyl-tRNA Synthetase.
J.Am.Chem.Soc., 143, 2021
6B89
DownloadVisualize
BU of 6b89 by Molmil
E. coli LptB in complex with ADP and novobiocin
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Lipopolysaccharide export system ATP-binding protein LptB, MAGNESIUM ION, ...
Authors:May, J.M, Lazarus, M.B, Sherman, D.J, Owens, T.W, Mandler, M.D, Kahne, D.K.
Deposit date:2017-10-05
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Antibiotic Novobiocin Binds and Activates the ATPase That Powers Lipopolysaccharide Transport.
J. Am. Chem. Soc., 139, 2017
6B8B
DownloadVisualize
BU of 6b8b by Molmil
E. coli LptB in complex with ADP and a novobiocin derivative
Descriptor: (3s,5s,7s)-N-{7-[(3-O-carbamoyl-6-deoxy-5-methyl-4-O-methyl-beta-D-gulopyranosyl)oxy]-4-hydroxy-8-methyl-2-oxo-2H-1-ben zopyran-3-yl}tricyclo[3.3.1.1~3,7~]decane-1-carboxamide, ADENOSINE-5'-DIPHOSPHATE, Lipopolysaccharide export system ATP-binding protein LptB, ...
Authors:Mandler, M.D, Owens, T.W, Lazarus, M.B, May, J.M, Kahne, D.K.
Deposit date:2017-10-06
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The Antibiotic Novobiocin Binds and Activates the ATPase That Powers Lipopolysaccharide Transport.
J. Am. Chem. Soc., 139, 2017
5N6W
DownloadVisualize
BU of 5n6w by Molmil
Retinoschisin R141H Mutant
Descriptor: Retinoschisin
Authors:Ramsay, E.P, Collins, R.F, Owens, T.W, Siebert, C.A, Jones, R.P.O, Roseman, A, Wang, T, Baldock, C.
Deposit date:2017-02-16
Release date:2017-04-12
Last modified:2017-08-30
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structural analysis of X-linked retinoschisis mutations reveals distinct classes which differentially effect retinoschisin function
Human Molecular Genetics, 25, 2016
6MGF
DownloadVisualize
BU of 6mgf by Molmil
untagged, wild-type LptB in complex with ADP
Descriptor: (3s,5s,7s)-N-{7-[(3-O-carbamoyl-6-deoxy-5-methyl-4-O-methyl-beta-D-gulopyranosyl)oxy]-4-hydroxy-8-methyl-2-oxo-2H-1-ben zopyran-3-yl}tricyclo[3.3.1.1~3,7~]decane-1-carboxamide, ADENOSINE-5'-DIPHOSPHATE, Lipopolysaccharide export system ATP-binding protein LptB, ...
Authors:Mandler, M.D, Owens, T.W, Ruiz, N, Kahne, D.
Deposit date:2018-09-13
Release date:2019-09-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.982 Å)
Cite:Bypassing the requirement for coupling of ATP binding and hydrolysis in the lipopolysaccharide ABC transporte
not published
7KDT
DownloadVisualize
BU of 7kdt by Molmil
Human Tom70 in complex with SARS CoV2 Orf9b
Descriptor: Mitochondrial import receptor subunit TOM70, ORF9b protein
Authors:QCRG Structural Biology Consortium
Deposit date:2020-10-09
Release date:2020-10-21
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.
Science, 370, 2020
7KQP
DownloadVisualize
BU of 7kqp by Molmil
Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ADP-ribose (P43 crystal form)
Descriptor: Non-structural protein 3, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-11-17
Release date:2020-12-09
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (0.88 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
7KQW
DownloadVisualize
BU of 7kqw by Molmil
Crystal structure of SARS-CoV-2 NSP3 macrodomain (C2 crystal form, methylated)
Descriptor: Non-structural protein 3
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-11-17
Release date:2020-12-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (0.93 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
7KQO
DownloadVisualize
BU of 7kqo by Molmil
Crystal structure of SARS-CoV-2 NSP3 macrodomain (P43 crystal form)
Descriptor: Non-structural protein 3
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-11-17
Release date:2020-12-09
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
7KR0
DownloadVisualize
BU of 7kr0 by Molmil
Crystal structure of SARS-CoV-2 NSP3 macrodomain (C2 crystal form, 100 K)
Descriptor: Non-structural protein 3
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-11-18
Release date:2020-12-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (0.77 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
7KR1
DownloadVisualize
BU of 7kr1 by Molmil
Crystal structure of SARS-CoV-2 NSP3 macrodomain (C2 crystal form, 310 K)
Descriptor: Non-structural protein 3
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-11-18
Release date:2020-12-09
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
5RSO
DownloadVisualize
BU of 5rso by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000000226
Descriptor: Non-structural protein 3, PARA ACETAMIDO BENZOIC ACID
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-09-28
Release date:2020-12-16
Last modified:2022-05-25
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
5RT7
DownloadVisualize
BU of 5rt7 by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000015442276
Descriptor: 1H-PYRROLO[2,3-B]PYRIDINE, Non-structural protein 3
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-09-28
Release date:2020-12-16
Last modified:2022-05-25
Method:X-RAY DIFFRACTION (1 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
5RTO
DownloadVisualize
BU of 5rto by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000388302
Descriptor: 4-PIPERIDINO-PIPERIDINE, Non-structural protein 3
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-09-28
Release date:2020-12-16
Last modified:2022-05-25
Method:X-RAY DIFFRACTION (1 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
5RU6
DownloadVisualize
BU of 5ru6 by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000001442764
Descriptor: Non-structural protein 3, naphthalene-2-carboximidamide
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-09-28
Release date:2020-12-16
Last modified:2022-05-25
Method:X-RAY DIFFRACTION (1 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
5RUO
DownloadVisualize
BU of 5ruo by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000001683100
Descriptor: 4-chloro-1H-indole-2-carboxylic acid, Non-structural protein 3
Authors:Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
Deposit date:2020-09-28
Release date:2020-12-16
Last modified:2022-05-25
Method:X-RAY DIFFRACTION (1 Å)
Cite:Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon