Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3IZ1
DownloadVisualize
BU of 3iz1 by Molmil
C-alpha model fitted into the EM structure of Cx26M34A
Descriptor: Gap junction beta-2 protein
Authors:Oshima, A, Tani, K, Toloue, M.M, Hiroaki, Y, Smock, A, Inukai, S, Cone, A, Nicholson, B.J, Sosinsky, G.E, Fujiyoshi, Y.
Deposit date:2010-08-19
Release date:2010-11-03
Last modified:2024-02-21
Method:ELECTRON CRYSTALLOGRAPHY (6 Å)
Cite:Asymmetric configurations and N-terminal rearrangements in connexin26 gap junction channels.
J.Mol.Biol., 405, 2011
3IZ2
DownloadVisualize
BU of 3iz2 by Molmil
C-alpha model fitted into the EM structure of Cx26M34Adel2-7
Descriptor: Gap junction beta-2 protein
Authors:Oshima, A, Tani, K, Toloue, M.M, Hiroaki, Y, Smock, A, Inukai, S, Cone, A, Nicholson, B.J, Sosinsky, G.E, Fujiyoshi, Y.
Deposit date:2010-08-19
Release date:2010-11-03
Last modified:2024-02-21
Method:ELECTRON CRYSTALLOGRAPHY (10 Å)
Cite:Asymmetric configurations and N-terminal rearrangements in connexin26 gap junction channels.
J.Mol.Biol., 405, 2011
5H1R
DownloadVisualize
BU of 5h1r by Molmil
C. elegans INX-6 gap junction channel
Descriptor: Innexin-6
Authors:Oshima, A, Tani, K, Fujiyoshi, Y.
Deposit date:2016-10-11
Release date:2016-12-07
Last modified:2017-02-01
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Atomic structure of the innexin-6 gap junction channel determined by cryo-EM
Nat Commun, 7, 2016
5H1Q
DownloadVisualize
BU of 5h1q by Molmil
C. elegans INX-6 gap junction hemichannel
Descriptor: Innexin-6
Authors:Oshima, A, Tani, K, Fujiyoshi, Y.
Deposit date:2016-10-11
Release date:2016-12-07
Last modified:2017-02-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Atomic structure of the innexin-6 gap junction channel determined by cryo-EM
Nat Commun, 7, 2016
2ZW3
DownloadVisualize
BU of 2zw3 by Molmil
Structure of the connexin-26 gap junction channel at 3.5 angstrom resolution
Descriptor: Gap junction beta-2 protein
Authors:Maeda, S, Nakagawa, S, Suga, M, Yamashita, E, Oshima, A, Fujiyoshi, Y, Tsukihara, T.
Deposit date:2008-12-01
Release date:2009-04-07
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure of the connexin 26 gap junction channel at 3.5 A resolution
Nature, 458, 2009
7Y14
DownloadVisualize
BU of 7y14 by Molmil
Cryo-EM structure of MrgD-Gi complex with beta-alanine (local)
Descriptor: BETA-ALANINE, PALMITIC ACID, Soluble cytochrome b562,Mas-related G-protein coupled receptor member D
Authors:Suzuki, S, Iida, M, Kawamoto, A, Oshima, A.
Deposit date:2022-06-06
Release date:2022-07-20
Last modified:2022-11-23
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insight into the activation mechanism of MrgD with heterotrimeric Gi-protein revealed by cryo-EM.
Commun Biol, 5, 2022
7Y12
DownloadVisualize
BU of 7y12 by Molmil
Cryo-EM structure of MrgD-Gi complex with beta-alanine
Descriptor: BETA-ALANINE, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Suzuki, S, Iida, M, Kawamoto, A, Oshima, A.
Deposit date:2022-06-06
Release date:2022-07-20
Last modified:2023-02-15
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural insight into the activation mechanism of MrgD with heterotrimeric Gi-protein revealed by cryo-EM.
Commun Biol, 5, 2022
7Y13
DownloadVisualize
BU of 7y13 by Molmil
Cryo-EM structure of apo-state MrgD-Gi complex (local)
Descriptor: PALMITIC ACID, Soluble cytochrome b562,Mas-related G-protein coupled receptor member D
Authors:Suzuki, S, Iida, M, Kawamoto, A, Oshima, A.
Deposit date:2022-06-06
Release date:2022-07-20
Last modified:2022-11-23
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural insight into the activation mechanism of MrgD with heterotrimeric Gi-protein revealed by cryo-EM.
Commun Biol, 5, 2022
7Y15
DownloadVisualize
BU of 7y15 by Molmil
Cryo-EM structure of apo-state MrgD-Gi complex
Descriptor: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, Guanine nucleotide-binding protein G(i) subunit alpha-1, ...
Authors:Suzuki, S, Iida, M, Kawamoto, A, Oshima, A.
Deposit date:2022-06-06
Release date:2022-07-20
Last modified:2022-11-23
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Structural insight into the activation mechanism of MrgD with heterotrimeric Gi-protein revealed by cryo-EM.
Commun Biol, 5, 2022
6KFG
DownloadVisualize
BU of 6kfg by Molmil
Undocked INX-6 hemichannel in detergent
Descriptor: Innexin-6
Authors:Burendei, B, Shinozaki, R, Watanabe, M, Terada, T, Tani, K, Fujiyoshi, Y, Oshima, A.
Deposit date:2019-07-07
Release date:2020-02-12
Last modified:2020-03-11
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structures of undocked innexin-6 hemichannels in phospholipids.
Sci Adv, 6, 2020
6KFF
DownloadVisualize
BU of 6kff by Molmil
Undocked INX-6 hemichannel in a nanodisc
Descriptor: Innexin-6
Authors:Burendei, B, Shinozaki, R, Watanabe, M, Terada, T, Tani, K, Fujiyoshi, Y, Oshima, A.
Deposit date:2019-07-07
Release date:2020-02-12
Last modified:2020-03-11
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structures of undocked innexin-6 hemichannels in phospholipids.
Sci Adv, 6, 2020
6KFH
DownloadVisualize
BU of 6kfh by Molmil
Undocked hemichannel of an N-terminal deletion mutant of INX-6 in a nanodisc
Descriptor: Innexin-6
Authors:Burendei, B, Shinozaki, R, Watanabe, M, Terada, T, Tani, K, Fujiyoshi, Y, Oshima, A.
Deposit date:2019-07-07
Release date:2020-02-12
Last modified:2020-03-11
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structures of undocked innexin-6 hemichannels in phospholipids.
Sci Adv, 6, 2020
7WSV
DownloadVisualize
BU of 7wsv by Molmil
Cryo-EM structure of the N-terminal deletion mutant of human pannexin-1 in a nanodisc
Descriptor: Pannexin-1
Authors:Kuzuya, M, Hirano, H, Hayashida, K, Watanabe, M, Kobayashi, K, Tani, K, Fujiyoshi, Y, Oshima, A.
Deposit date:2022-02-01
Release date:2022-02-16
Last modified:2022-02-23
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Structures of human pannexin-1 in nanodiscs reveal gating mediated by dynamic movement of the N terminus and phospholipids.
Sci.Signal., 15, 2022
7F8O
DownloadVisualize
BU of 7f8o by Molmil
Cryo-EM structure of the C-terminal deletion mutant of human PANX1 in a nanodisc
Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, Pannexin-1
Authors:Kuzuya, M, Hirano, H, Hayashida, K, Watanabe, M, Kobayashi, K, Tani, K, Fujiyoshi, Y, Oshima, A.
Deposit date:2021-07-02
Release date:2022-01-26
Last modified:2022-02-23
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structures of human pannexin-1 in nanodiscs reveal gating mediated by dynamic movement of the N terminus and phospholipids.
Sci.Signal., 15, 2022
7F8J
DownloadVisualize
BU of 7f8j by Molmil
Cryo-EM structure of human pannexin-1 in a nanodisc
Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, Pannexin-1
Authors:Kuzuya, M, Hirano, H, Hayashida, K, Watanabe, M, Kobayashi, K, Tani, K, Fujiyoshi, Y, Oshima, A.
Deposit date:2021-07-02
Release date:2022-01-26
Last modified:2022-02-23
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structures of human pannexin-1 in nanodiscs reveal gating mediated by dynamic movement of the N terminus and phospholipids.
Sci.Signal., 15, 2022
7F8N
DownloadVisualize
BU of 7f8n by Molmil
Human pannexin-1 showing a conformational change in the N-terminal domain and blocked pore
Descriptor: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, Pannexin-1
Authors:Kuzuya, M, Hirano, H, Hayashida, K, Watanabe, M, Kobayashi, K, Tani, K, Fujiyoshi, Y, Oshima, A.
Deposit date:2021-07-02
Release date:2022-01-26
Last modified:2022-02-23
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structures of human pannexin-1 in nanodiscs reveal gating mediated by dynamic movement of the N terminus and phospholipids.
Sci.Signal., 15, 2022
8IF4
DownloadVisualize
BU of 8if4 by Molmil
Structure of human alpha-2/delta-1 without mirogabalin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Voltage-dependent calcium channel subunit alpha-2/delta-1
Authors:Kozai, D, Numoto, N, Fujiyoshi, Y.
Deposit date:2023-02-17
Release date:2023-04-05
Last modified:2023-04-12
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Recognition Mechanism of a Novel Gabapentinoid Drug, Mirogabalin, for Recombinant Human alpha 2 delta 1, a Voltage-Gated Calcium Channel Subunit.
J.Mol.Biol., 435, 2023
8IF3
DownloadVisualize
BU of 8if3 by Molmil
Structure of human alpha-2/delta-1 with mirogabalin
Descriptor: 2-[(1R,5S,6S)-6-(aminomethyl)-3-ethyl-6-bicyclo[3.2.0]hept-3-enyl]acetic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Kozai, D, Numoto, N, Fujiyoshi, Y.
Deposit date:2023-02-17
Release date:2023-04-05
Last modified:2023-04-12
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Recognition Mechanism of a Novel Gabapentinoid Drug, Mirogabalin, for Recombinant Human alpha 2 delta 1, a Voltage-Gated Calcium Channel Subunit.
J.Mol.Biol., 435, 2023
8H9W
DownloadVisualize
BU of 8h9w by Molmil
Crystal structure of voltage-gated sodium channel NavAb N49K mutant in calcium ion condition
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CALCIUM ION, CHAPSO, ...
Authors:Irie, K.
Deposit date:2022-10-25
Release date:2023-07-26
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structural basis of divalent cation block in a tetrameric prokaryotic sodium channel.
Nat Commun, 14, 2023
8H9X
DownloadVisualize
BU of 8h9x by Molmil
Crystal structure of voltage-gated sodium channel NavAb N49K/L176Q mutant in sodium ion condition
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CHAPSO, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Irie, K, Oda, Y.
Deposit date:2022-10-25
Release date:2023-07-26
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:The structural basis of divalent cation block in a tetrameric prokaryotic sodium channel.
Nat Commun, 14, 2023
8HA2
DownloadVisualize
BU of 8ha2 by Molmil
Crystal structure of voltage-gated sodium channel NavAb N49K/L176G mutant in calcium ion condition
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CALCIUM ION, CHAPSO, ...
Authors:Irie, K, Oda, Y.
Deposit date:2022-10-26
Release date:2023-07-26
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The structural basis of divalent cation block in a tetrameric prokaryotic sodium channel.
Nat Commun, 14, 2023
8H9Y
DownloadVisualize
BU of 8h9y by Molmil
Crystal structure of voltage-gated sodium channel NavAb N49K/L176Q mutant in calcium ion condition
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CALCIUM ION, CHAPSO, ...
Authors:Irie, K, Oda, Y.
Deposit date:2022-10-25
Release date:2023-07-26
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:The structural basis of divalent cation block in a tetrameric prokaryotic sodium channel.
Nat Commun, 14, 2023
8H9O
DownloadVisualize
BU of 8h9o by Molmil
Crystal structure of voltage-gated sodium channel NavAb N49K mutant in sodium ion condition
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CHAPSO, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Irie, K.
Deposit date:2022-10-25
Release date:2023-07-26
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The structural basis of divalent cation block in a tetrameric prokaryotic sodium channel.
Nat Commun, 14, 2023
8HA1
DownloadVisualize
BU of 8ha1 by Molmil
Crystal structure of voltage-gated sodium channel NavAb N49K/L176G mutant in sodium ion condition
Descriptor: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CHAPSO, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Irie, K, Oda, Y.
Deposit date:2022-10-26
Release date:2023-07-26
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:The structural basis of divalent cation block in a tetrameric prokaryotic sodium channel.
Nat Commun, 14, 2023
8IHJ
DownloadVisualize
BU of 8ihj by Molmil
Cryo-EM structure of HCA3-Gi complex with acifran
Descriptor: (5~{S})-5-methyl-4-oxidanylidene-5-phenyl-furan-2-carboxylic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y.
Deposit date:2023-02-22
Release date:2023-08-30
Last modified:2023-12-06
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding.
Nat Commun, 14, 2023

 

123>

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon