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6MH3
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BU of 6mh3 by Molmil
The crystal structure of Zika virus NS3 helicase domain
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, PHOSPHATE ION, ...
Authors:Oliva, G, Mesquita, N, Godoy, A.
Deposit date:2018-09-17
Release date:2018-10-10
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:The crystal structure of Zika virus NS3 helicase domain
To Be Published
1DEA
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BU of 1dea by Molmil
STRUCTURE AND CATALYTIC MECHANISM OF GLUCOSAMINE 6-PHOSPHATE DEAMINASE FROM ESCHERICHIA COLI AT 2.1 ANGSTROMS RESOLUTION
Descriptor: GLUCOSAMINE 6-PHOSPHATE DEAMINASE, PHOSPHATE ION
Authors:Oliva, G, Fontes, M.R.M, Garratt, R.C, Altamirano, M.M, Calcagno, M.L, Horjales, E.
Deposit date:1995-09-13
Release date:1996-01-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and catalytic mechanism of glucosamine 6-phosphate deaminase from Escherichia coli at 2.1 A resolution.
Structure, 3, 1995
1HOT
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BU of 1hot by Molmil
GLUCOSAMINE 6-PHOSPHATE DEAMINASE COMPLEXED WITH THE ALLOSTERIC ACTIVATOR N-ACETYL-GLUCOSAMINE-6-PHOSPHATE
Descriptor: 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, GLUCOSAMINE 6-PHOSPHATE DEAMINASE, PHOSPHATE ION
Authors:Oliva, G, Fontes, M.L, Garratt, R, Altamirano, M.M, Calcagno, M.L, Horjales, E.
Deposit date:1995-11-17
Release date:1996-04-03
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure and catalytic mechanism of glucosamine 6-phosphate deaminase from Escherichia coli at 2.1 A resolution.
Structure, 3, 1995
1HOR
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BU of 1hor by Molmil
STRUCTURE AND CATALYTIC MECHANISM OF GLUCOSAMINE 6-PHOSPHATE DEAMINASE FROM ESCHERICHIA COLI AT 2.1 ANGSTROMS RESOLUTION
Descriptor: 2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE, GLUCOSAMINE 6-PHOSPHATE DEAMINASE, PHOSPHATE ION
Authors:Oliva, G, Fontes, M.R.M, Garratt, R.C, Altamirano, M.M, Calcagno, M.L, Horjales, E.
Deposit date:1995-09-13
Release date:1996-01-29
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure and catalytic mechanism of glucosamine 6-phosphate deaminase from Escherichia coli at 2.1 A resolution.
Structure, 3, 1995
1CD5
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BU of 1cd5 by Molmil
GLUCOSAMINE-6-PHOSPHATE DEAMINASE FROM E.COLI, T CONFORMER
Descriptor: PROTEIN (GLUCOSAMINE 6-PHOSPHATE DEAMINASE)
Authors:Horjales, E, Altamirano, M.M, Calcagno, M.L, Garratt, R.C, Oliva, G.
Deposit date:1999-03-05
Release date:2000-03-06
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The allosteric transition of glucosamine-6-phosphate deaminase: the structure of the T state at 2.3 A resolution.
Structure Fold.Des., 7, 1999
1YRR
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BU of 1yrr by Molmil
Crystal Structure Of The N-Acetylglucosamine-6-Phosphate Deacetylase From Escherichia Coli K12 at 2.0 A Resolution
Descriptor: GLYCEROL, N-acetylglucosamine-6-phosphate deacetylase, PHOSPHATE ION
Authors:Ferreira, F.M, Aparicio, R, Mendoza-Hernandez, G, Calcagno, M.L, Oliva, G.
Deposit date:2005-02-04
Release date:2006-03-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural analysis of N-acetylglucosamine-6-phosphate deacetylase apoenzyme from Escherichia coli.
J.Mol.Biol., 359, 2006
3OIS
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BU of 3ois by Molmil
Crystal Structure Xylellain, a cysteine protease from Xylella fastidiosa
Descriptor: Cysteine protease, URIDINE-5'-DIPHOSPHATE
Authors:Leite, N.R, Faro, A.R, Oliva, M.A.V, Thiemann, O.H, Oliva, G.
Deposit date:2010-08-19
Release date:2011-08-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The crystal structure of the cysteine protease Xylellain from Xylella fastidiosa reveals an intriguing activation mechanism.
Febs Lett., 587, 2013
8UM3
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BU of 8um3 by Molmil
PanDDA analysis -- Crystal Structure of Zika virus NS3 Helicase in complex with Z203039992
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 6-chlorotetrazolo[1,5-b]pyridazine, ...
Authors:Godoy, A.S, Noske, G.D, Fairhead, M, Lithgo, R.M, Koekemoer, L, Aschenbrenner, J.C, Balcomb, B.H, Marples, P.G, Ni, X, Tomlinson, C.W.E, Wild, C, Mesquita, N.C.M.R, Oliva, G, Fearon, D, Walsh, M.A, von Delft, F.
Deposit date:2023-10-17
Release date:2023-11-01
Method:X-RAY DIFFRACTION (1.925 Å)
Cite:PanDDA analysis -- Crystal Structure of Zika virus NS3 Helicase in complex with Z203039992
To Be Published
8V7R
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BU of 8v7r by Molmil
PanDDA analysis -- Crystal Structure of Zika virus NS3 Helicase in complex with Z56772132
Descriptor: (5R)-5-[2-(4-methoxyphenyl)ethyl]-5-methylimidazolidine-2,4-dione, 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, ...
Authors:Godoy, A.S, Noske, G.D, Fairhead, M, Lithgo, R.M, Koekemoer, L, Aschenbrenner, J.C, Balcomb, B.H, Marples, P.G, Ni, X, Tomlinson, C.W.E, Wild, C, Mesquita, N.C.M.R, Oliva, G, Fearon, D, Walsh, M.A, von Delft, F.
Deposit date:2023-12-04
Release date:2023-12-20
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:PanDDA analysis -- Crystal Structure of Zika virus NS3 Helicase in complex with Z56772132
To Be Published
8V7U
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BU of 8v7u by Molmil
PanDDA analysis -- Crystal Structure of Zika virus NS3 Helicase in complex with Z729726784
Descriptor: 1,2-ETHANEDIOL, 2-cyclopentyl-N-(3-methyl-1,2,4-oxadiazol-5-yl)acetamide, DIMETHYL SULFOXIDE, ...
Authors:Godoy, A.S, Noske, G.D, Fairhead, M, Lithgo, R.M, Koekemoer, L, Aschenbrenner, J.C, Balcomb, B.H, Marples, P.G, Ni, X, Tomlinson, C.W.E, Wild, C, Mesquita, N.C.M.R, Oliva, G, Fearon, D, Walsh, M.A, von Delft, F.
Deposit date:2023-12-04
Release date:2023-12-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:PanDDA analysis -- Crystal Structure of Zika virus NS3 Helicase in complex with Z729726784
To Be Published
7RB2
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BU of 7rb2 by Molmil
Cryo-EM structure of SARS-CoV-2 NSP15 NendoU in BIS-Tris pH 6.0
Descriptor: Uridylate-specific endoribonuclease
Authors:Godoy, A.S, Song, Y, Nakamura, A.M, Noske, G.D, Gawriljuk, V.O, Fernandes, R.S, Oliva, G.
Deposit date:2021-07-05
Release date:2021-07-14
Last modified:2023-06-21
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Allosteric regulation and crystallographic fragment screening of SARS-CoV-2 NSP15 endoribonuclease.
Nucleic Acids Res., 51, 2023
7RB0
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BU of 7rb0 by Molmil
Cryo-EM structure of SARS-CoV-2 NSP15 NendoU at pH 7.5
Descriptor: Uridylate-specific endoribonuclease
Authors:Godoy, A.S, Song, Y, Nakamura, A.M, Noske, G.D, Gawriljuk, V.O, Fernandes, R.S, Oliva, G.
Deposit date:2021-07-05
Release date:2021-07-14
Last modified:2023-06-21
Method:ELECTRON MICROSCOPY (2.98 Å)
Cite:Allosteric regulation and crystallographic fragment screening of SARS-CoV-2 NSP15 endoribonuclease.
Nucleic Acids Res., 51, 2023
7S82
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BU of 7s82 by Molmil
Cryo-EM structure of SARS-CoV-2 Main protease C145S in complex with N-terminal peptide
Descriptor: 3C-like proteinase
Authors:Noske, G.D, Song, Y, Fernandes, R.S, Oliva, G, Godoy, A.S.
Deposit date:2021-09-17
Release date:2022-03-30
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Cryo-EM structure of SARS-CoV-2 Main protease C145S in complex with N-terminal peptide
To Be Published
8DH6
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BU of 8dh6 by Molmil
Cryo-EM structure of Saccharomyces cerevisiae cytochrome c oxidase (Complex IV) extracted in lipid nanodiscs
Descriptor: CALCIUM ION, COPPER (II) ION, Cytochrome c oxidase subunit 1, ...
Authors:Godoy, A.S, Song, Y, Cheruvara, H, Quigley, A, Oliva, G.
Deposit date:2022-06-25
Release date:2022-07-20
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Cryo-EM structure of Saccharomyces cerevisiae cytochrome c oxidase (Complex IV) extracted in lipid nanodiscs
To Be Published
8DH7
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BU of 8dh7 by Molmil
Cryo-EM structure of Saccharomyces cerevisiae Succinyl-CoA:acetate CoA-transferase (Ach1p)
Descriptor: Acetyl-CoA hydrolase
Authors:Godoy, A.S, Song, Y, Cheruvara, H, Quigley, A, Oliva, G.
Deposit date:2022-06-25
Release date:2022-07-20
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Cryo-EM structure of Saccharomyces cerevisiae cytochrome c oxidase (Complex IV) extracted in lipid nanodiscs
To Be Published
3IDS
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BU of 3ids by Molmil
Structure of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase from Trypanosoma cruzi in complex with the irreversible iodoacetamide inhibitor
Descriptor: ACETAMIDE, GLYCEROL, Glyceraldehyde-3-phosphate dehydrogenase, ...
Authors:Balliano, T.L, Guido, R.V.C, Andricopulo, A.D, Oliva, G.
Deposit date:2009-07-21
Release date:2009-08-11
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase from Trypanosoma cruzi in complex with the irreversible iodoacetamide inhibitor
To be Published
3IEX
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BU of 3iex by Molmil
Schistosoma Purine nucleoside phosphorylase in complex with guanosine
Descriptor: ACETATE ION, DIMETHYL SULFOXIDE, GUANOSINE, ...
Authors:Castilho, M.S, Pereira, H.M, Oliva, G, Andricopulo, A.D.
Deposit date:2009-07-23
Release date:2010-03-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural basis for selective inhibition of purine nucleoside phosphorylase from Schistosoma mansoni: kinetic and structural studies
Bioorg.Med.Chem., 18, 2010
3K1E
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BU of 3k1e by Molmil
Crystal structure of odorant binding protein 1 (AaegOBP1) from Aedes aegypti
Descriptor: 2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Leite, N.R, Krogh, R, Leal, W.S, Iulek, J, Oliva, G.
Deposit date:2009-09-27
Release date:2009-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of an odorant-binding protein from the mosquito Aedes aegypti suggests a binding pocket covered by a pH-sensitive "Lid".
Plos One, 4, 2009
6URV
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BU of 6urv by Molmil
Crystal structure of Yellow Fever Virus NS2B-NS3 protease domain
Descriptor: NS2B, NS3 protease
Authors:Noske, G.D, Gawriljuk, V.F.O, Fernandes, R.S, Oliva, G, Godoy, A.S.
Deposit date:2019-10-24
Release date:2020-01-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural characterization and polymorphism analysis of the NS2B-NS3 protease from the 2017 Brazilian circulating strain of Yellow Fever virus.
Biochim Biophys Acta Gen Subj, 1864, 2020
3O7T
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BU of 3o7t by Molmil
Crystal Structure of Cyclophilin A from Moniliophthora perniciosa
Descriptor: Cyclophilin A
Authors:Monzani, P.S, Pereira, H.M, Gramacho, K.P, Meirelles, F.V, Oliva, G, Cascardo, J.C.M.
Deposit date:2010-07-31
Release date:2011-08-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal Structures of apo-cyclophilin and bounded cyclosporine A from Moniliophthora perniciosa
To be Published
3PMP
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BU of 3pmp by Molmil
Crystal Structure of Cyclophilin A from Moniliophthora perniciosa in complex with Cyclosporin A
Descriptor: CYCLOSPORIN A, Cyclophilin A
Authors:Monzani, P, Pereira, H.M, Gramacho, K.P, Meirelles, F.V, Oliva, G, Cascardo, J.C.C.
Deposit date:2010-11-17
Release date:2011-11-23
Last modified:2023-05-31
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Crystal Structure of Cyclophilin A from Moniliophthora perniciosa
To be Published
8E25
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BU of 8e25 by Molmil
Crystal Structure of SARS-CoV-2 Main Protease M49I mutant in complex with Nirmatrelvir
Descriptor: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, DIMETHYL SULFOXIDE, Replicase polyprotein 1ab
Authors:Noske, G.D, Godoy, A.S, Oliva, G.
Deposit date:2022-08-14
Release date:2022-10-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.868 Å)
Cite:Structural basis of nirmatrelvir and ensitrelvir activity against naturally occurring polymorphisms of the SARS-CoV-2 main protease.
J.Biol.Chem., 299, 2023
8E26
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BU of 8e26 by Molmil
Crystal Structure of SARS-CoV-2 Main Protease N142S mutant in complex with Nirmatrelvir
Descriptor: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5, DIMETHYL SULFOXIDE
Authors:Noske, G.D, Godoy, A.S, Oliva, G.
Deposit date:2022-08-14
Release date:2022-10-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.845 Å)
Cite:Structural basis of nirmatrelvir and ensitrelvir activity against naturally occurring polymorphisms of the SARS-CoV-2 main protease.
J.Biol.Chem., 299, 2023
8EYJ
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BU of 8eyj by Molmil
Crystal Structure of uncleaved SARS-CoV-2 Main Protease C145S mutant in complex with Nirmatrelvir
Descriptor: (1R,2S,5S)-N-{(1E,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide, 3C-like proteinase nsp5
Authors:Noske, G.D, Godoy, A.S, Oliva, G.
Deposit date:2022-10-27
Release date:2022-11-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.738 Å)
Cite:An in-solution snapshot of SARS-COV-2 main protease maturation process and inhibition.
Nat Commun, 14, 2023
1SAC
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BU of 1sac by Molmil
THE STRUCTURE OF PENTAMERIC HUMAN SERUM AMYLOID P COMPONENT
Descriptor: ACETIC ACID, CALCIUM ION, SERUM AMYLOID P COMPONENT
Authors:White, H.E, Emsley, J, O'Hara, B.P, Oliva, G, Srinivasan, N, Tickle, I.J, Blundell, T.L, Pepys, M.B, Wood, S.P.
Deposit date:1994-01-27
Release date:1994-05-31
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of pentameric human serum amyloid P component.
Nature, 367, 1994

217705

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