Author results

1VD4
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SOLUTION STRUCTURE OF THE ZINC FINGER DOMAIN OF TFIIE ALPHA
Descriptor:Transcription initiation factor IIE, alpha subunit, ZINC ION
Authors:Okuda, M., Tanaka, A., Arai, Y., Satoh, M., Okamura, H., Nagadoi, A., Hanaoka, F., Ohkuma, Y., Nishimura, Y.
Deposit date:2004-03-18
Release date:2004-10-05
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:A novel zinc finger structure in the large subunit of human general transcription factor TFIIE.
J.Biol.Chem., 279, 2004
2RNQ
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SOLUTION STRUCTURE OF THE C-TERMINAL ACIDIC DOMAIN OF TFIIE ALPHA
Descriptor:Transcription initiation factor IIE subunit alpha
Authors:Okuda, M., Nishimura, Y.
Deposit date:2008-01-31
Release date:2008-04-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH
Embo J., 27, 2008
2RNR
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SOLUTION STRUCTURE OF THE COMPLEX BETWEEN TFIIE ALPHA C-TERMINAL ACIDIC DOMAIN AND TFIIH P62 PH DOMAIN
Descriptor:Transcription initiation factor IIE subunit alpha, TFIIH basal transcription factor complex p62 subunit
Authors:Okuda, M., Nishimura, Y.
Deposit date:2008-01-31
Release date:2008-04-01
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH
Embo J., 27, 2008
1D8J
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SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA
Descriptor:GENERAL TRANSCRIPTION FACTOR TFIIE-BETA
Authors:Okuda, M., Watanabe, Y., Okamura, H., Hanaoka, F., Ohkuma, Y., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1999-10-25
Release date:2000-04-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.
EMBO J., 19, 2000
1D8K
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SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA
Descriptor:GENERAL TRANSCRIPTION FACTOR TFIIE-BETA
Authors:Okuda, M., Watanabe, Y., Okamura, H., Hanaoka, F., Ohkuma, Y., Nishimura, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:1999-10-25
Release date:2000-04-26
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.
EMBO J., 19, 2000
2DY7
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SOLUTION STRUCTURE OF THE FIRST CHROMODOMAIN OF YEAST CHD1
Descriptor:Chromo domain protein 1
Authors:Okuda, M., Nishimura, Y.
Deposit date:2006-09-07
Release date:2006-11-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Polymorphism of Chromodomains in Chd1
J.Mol.Biol., 365, 2007
2DY8
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SOLUTION STRUCTURE OF THE SECOND CHROMODOMAIN OF YEAST CHD1
Descriptor:Chromo domain protein 1
Authors:Okuda, M., Nishimura, Y.
Deposit date:2006-09-07
Release date:2006-11-28
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Structural Polymorphism of Chromodomains in Chd1
J.Mol.Biol., 365, 2007
2RUK
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SOLUTION STRUCTURE OF THE COMPLEX BETWEEN P53 TRANSACTIVATION DOMAIN 2 AND TFIIH P62 PH DOMAIN
Descriptor:Cellular tumor antigen p53, General transcription factor IIH subunit 1
Authors:Okuda, M., Nishimura, Y.
Deposit date:2014-09-24
Release date:2014-10-15
Method:SOLUTION NMR
Cite:Extended String Binding Mode of the Phosphorylated Transactivation Domain of Tumor Suppressor p53
J.Am.Chem.Soc., 2014
2RVB
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SOLUTION STRUCTURE OF THE COMPLEX BETWEEN XPC ACIDIC DOMAIN AND TFIIH P62 PH DOMAIN
Descriptor:DNA repair protein complementing XP-C cells, General transcription factor IIH subunit 1
Authors:Okuda, M., Nishimura, Y.
Deposit date:2015-07-01
Release date:2015-09-09
Last modified:2017-06-07
Method:SOLUTION NMR
Cite:Structural Insight into the Mechanism of TFIIH Recognition by the Acidic String of the Nucleotide Excision Repair Factor XPC.
Structure, 23, 2015
5GOW
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SOLUTION STRUCTURE OF THE COMPLEX BETWEEN DP1 ACIDIC REGION AND TFIIH P62 PH DOMAIN
Descriptor:DP1, General transcription factor IIH subunit 1
Authors:Okuda, M., Nishimura, Y.
Deposit date:2016-07-29
Release date:2016-12-07
Last modified:2016-12-14
Method:SOLUTION NMR
Cite:The Interaction Mode of the Acidic Region of the Cell Cycle Transcription Factor DP1 with TFIIH
J. Mol. Biol., 428, 2016
5XV8
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SOLUTION STRUCTURE OF THE COMPLEX BETWEEN UVSSA ACIDIC REGION AND TFIIH P62 PH DOMAIN
Descriptor:UV-stimulated scaffold protein A, General transcription factor IIH subunit 1
Authors:Okuda, M., Nishimura, Y.
Deposit date:2017-06-27
Release date:2017-11-08
Last modified:2017-12-27
Method:SOLUTION NMR
Cite:Common TFIIH recruitment mechanism in global genome and transcription-coupled repair subpathways
Nucleic Acids Res., 45, 2017
3AJV
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SPLICING ENDONUCLEASE FROM AEROPYRUM PERNIX
Descriptor:Putative uncharacterized protein, tRNA-splicing endonuclease, GLYCEROL, ...
Authors:Yoshinari, S., Watanabe, Y., Okuda, M., Shiba, T., Inaoka, K.D., Kurisu, G.
Deposit date:2010-06-19
Release date:2010-11-17
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A Conserved Lysine Residue in the Crenarchaea-Specific Loop is Important for the Crenarchaeal Splicing Endonuclease Activity.
J.Mol.Biol., 405, 2011
2RNZ
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SOLUTION STRUCTURE OF THE PRESUMED CHROMODOMAIN OF THE YEAST HISTONE ACETYLTRANSFERASE, ESA1
Descriptor:Histone acetyltransferase ESA1
Authors:Shimojo, H., Sano, N., Moriwaki, Y., Okuda, M., Horikoshi, M., Nishimura, Y.
Deposit date:2008-03-01
Release date:2008-04-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
J.Mol.Biol., 378, 2008
2RO0
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SOLUTION STRUCTURE OF THE KNOTTED TUDOR DOMAIN OF THE YEAST HISTONE ACETYLTRANSFERASE, ESA1
Descriptor:Histone acetyltransferase ESA1
Authors:Shimojo, H., Sano, N., Moriwaki, Y., Okuda, M., Horikoshi, M., Nishimura, Y.
Deposit date:2008-03-01
Release date:2008-04-29
Last modified:2011-07-13
Method:SOLUTION NMR
Cite:Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
J.Mol.Biol., 378, 2008
6HUI
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THE STRUCTURE OF DPS FROM LISTERIA INNOCUA SOAKED WITH ZINC
Descriptor:DNA protection during starvation protein, ZINC ION
Authors:Zeth, K., Okuda, M.
Deposit date:2018-10-08
Release date:2019-09-04
Last modified:2019-09-11
Method:X-RAY DIFFRACTION (2.995 Å)
Cite:Metal Positions and Translocation Pathways of the Dodecameric Ferritin-like Protein Dps.
Inorg.Chem., 58, 2019
6HV1
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THE STRUCTURE OF DPS FROM LISTERIA INNOCUA SOAKED BEFORE SOAKING EXPERIMENTS WITH ZN, CO AND LA
Descriptor:DNA protection during starvation protein
Authors:Zeth, K., Okuda, M.
Deposit date:2018-10-10
Release date:2018-11-14
Last modified:2019-09-18
Method:X-RAY DIFFRACTION (2.547 Å)
Cite:Metal Positions and Translocation Pathways of the Dodecameric Ferritin-like Protein Dps.
Inorg.Chem., 58, 2019
6HVQ
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THE STRUCTURE OF DPS FROM LISTERIA INNOCUA SOAKED BEFORE SOAKING EXPERIMENTS WITH ZN, CO AND LA
Descriptor:DNA protection during starvation protein, LANTHANUM (III) ION
Authors:Zeth, K., Okuda, M.
Deposit date:2018-10-11
Release date:2019-09-04
Last modified:2019-09-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Metal Positions and Translocation Pathways of the Dodecameric Ferritin-like Protein Dps.
Inorg.Chem., 58, 2019
6HX2
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THE STRUCTURE OF DPS FROM LISTERIA INNOCUA SOAKED WITH COBALT
Descriptor:DNA protection during starvation protein, COBALT (II) ION
Authors:Zeth, K., Okuda, M.
Deposit date:2018-10-15
Release date:2019-09-04
Last modified:2019-11-20
Method:X-RAY DIFFRACTION (1.597 Å)
Cite:Metal Positions and Translocation Pathways of the Dodecameric Ferritin-like Protein Dps.
Inorg.Chem., 58, 2019
6SEV
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STRUCTURE OF DPS FROM LISTERIA INNOCUA SOAKED WITH 10 MM ZINC FOR 120 MINUTES
Descriptor:DNA starvation/stationary phase protection protein, ZINC ION
Authors:Zeth, K., Okuda, M.
Deposit date:2019-07-30
Release date:2019-09-25
Last modified:2019-10-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Metal Positions and Translocation Pathways of the Dodecameric Ferritin-like Protein Dps.
Inorg.Chem., 58, 2019