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2CYY
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BU of 2cyy by Molmil
Crystal structure of PH1519 from Pyrococcus horikosii OT3
Descriptor: CALCIUM ION, GLUTAMINE, Putative HTH-type transcriptional regulator PH1519
Authors:Okazaki, N, Nakano, N, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-07-08
Release date:2006-09-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of PH1519 from Pyrococcus horikosii OT3
To be Published
2DSY
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BU of 2dsy by Molmil
Crystal structure of TTHA0281 from thermus thermophilus HB8
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Hypothetical protein TTHA0281, MAGNESIUM ION
Authors:Okazaki, N, Kumei, M, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-07
Release date:2007-03-27
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a UPF0150-family protein from Thermus thermophilus HB8
ACTA CRYSTALLOGR.,SECT.F, 63, 2007
2EJ5
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BU of 2ej5 by Molmil
Crystal structure of GK2038 protein (enoyl-CoA hydratase subunit II) from Geobacillus kaustophilus
Descriptor: Enoyl-CoA hydratase subunit II
Authors:Okazaki, N, Agari, Y, Ebihara, A, Chen, L, Fu, Z.Q, Chrzas, J, Wang, B.C, Kuramitsu, S, Yamamoto, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-15
Release date:2007-09-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of GK2038 protein (enoyl-CoA hydratase subunit II) from Geobacillus kaustophilus
To be Published
2EA9
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BU of 2ea9 by Molmil
Crystal structure of a hypothetical protein JW2626 from E.coli
Descriptor: Hypothetical protein yfjZ
Authors:Okazaki, N, Kuramitsu, S, Yamamoto, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-31
Release date:2007-07-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of a hypothetical protein JW2626 from E.coli
To be Published
3VGB
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BU of 3vgb by Molmil
Crystal structure of glycosyltrehalose trehalohydrolase (GTHase) from Sulfolobus solfataricus KM1
Descriptor: CITRATE ANION, GLYCEROL, Malto-oligosyltrehalose trehalohydrolase
Authors:Okazaki, N, Tamada, T, Feese, M.D, Kato, M, Miura, Y, Komeda, T, Kobayashi, K, Kondo, K, Kuroki, R.
Deposit date:2011-08-09
Release date:2012-06-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.
Protein Sci., 21, 2012
3VGD
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BU of 3vgd by Molmil
Ctystal structure of glycosyltrehalose trehalohydrolase (D252E)
Descriptor: CITRATE ANION, GLYCEROL, Malto-oligosyltrehalose trehalohydrolase
Authors:Okazaki, N, Tamada, T, Feese, M.D, Kato, M, Miura, Y, Komeda, T, Kobayashi, K, Kondo, K, Kuroki, R.
Deposit date:2011-08-09
Release date:2012-06-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.
Protein Sci., 21, 2012
3VGE
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BU of 3vge by Molmil
Crystal structure of glycosyltrehalose trehalohydrolase (D252S)
Descriptor: CITRATE ANION, GLYCEROL, Malto-oligosyltrehalose trehalohydrolase
Authors:Okazaki, N, Tamada, T, Feese, M.D, Kato, M, Miura, Y, Komeda, T, Kobayashi, K, Kondo, K, Kuroki, R.
Deposit date:2011-08-09
Release date:2012-06-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.
Protein Sci., 21, 2012
3VGF
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BU of 3vgf by Molmil
Crystal structure of glycosyltrehalose trehalohydrolase (D252S) complexed with maltotriosyltrehalose
Descriptor: CITRATE ANION, GLYCEROL, Malto-oligosyltrehalose trehalohydrolase, ...
Authors:Okazaki, N, Tamada, T, Feese, M.D, Kato, M, Miura, Y, Komeda, T, Kobayashi, K, Kondo, K, Kuroki, R.
Deposit date:2011-08-09
Release date:2012-06-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.
Protein Sci., 21, 2012
3VGH
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BU of 3vgh by Molmil
Crystal structure of glycosyltrehalose trehalohydrolase (E283Q) complexed with maltotriosyltrehalose
Descriptor: CITRATE ANION, GLYCEROL, Malto-oligosyltrehalose trehalohydrolase, ...
Authors:Okazaki, N, Tamada, T, Feese, M.D, Kato, M, Miura, Y, Komeda, T, Kobayashi, K, Kondo, K, Kuroki, R.
Deposit date:2011-08-09
Release date:2012-06-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.
Protein Sci., 21, 2012
3VGG
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BU of 3vgg by Molmil
Crystal structure of glycosyltrehalose trehalohydrolase (E283Q) complexed with maltoheptaose
Descriptor: CITRATE ANION, GLYCEROL, Malto-oligosyltrehalose trehalohydrolase, ...
Authors:Okazaki, N, Tamada, T, Feese, M.D, Kato, M, Miura, Y, Komeda, T, Kobayashi, K, Kondo, K, Kuroki, R.
Deposit date:2011-08-09
Release date:2012-06-20
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.
Protein Sci., 21, 2012
5ZCR
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BU of 5zcr by Molmil
DSM5389 glycosyltrehalose synthase
Descriptor: GLYCEROL, MAGNESIUM ION, Maltooligosyl trehalose synthase
Authors:Tamada, T, Okazaki, N.
Deposit date:2018-02-20
Release date:2018-11-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of glycosyltrehalose synthase from Sulfolobus shibatae DSM5389
Acta Crystallogr F Struct Biol Commun, 74, 2018
2DJW
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BU of 2djw by Molmil
Crystal structure of TTHA0845 from Thermus thermophilus HB8
Descriptor: ZINC ION, probable transcriptional regulator, AsnC family
Authors:Okazaki, N, Nakano, N, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-05
Release date:2006-09-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the stand-alone RAM-domain protein from Thermus thermophilus HB8
ACTA CRYSTALLOGR.,SECT.F, 62, 2006
3VGU
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BU of 3vgu by Molmil
E134A mutant nucleoside diphosphate kinase derived from Halomonas sp. 593
Descriptor: Nucleoside diphosphate kinase
Authors:Okazaki, N, Yonezawa, Y, Arai, S, Matsumoto, F, Tamada, T, Tokunaga, H, Ishibashi, M, Tokunaga, M, Kuroki, R.
Deposit date:2011-08-21
Release date:2012-07-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase
Protein Sci., 21, 2012
3VGV
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BU of 3vgv by Molmil
E134A mutant nucleoside diphosphate kinase derived from Halomonas sp. 593
Descriptor: Nucleoside diphosphate kinase
Authors:Okazaki, N, Yonezawa, Y, Arai, S, Matsumoto, F, Tamada, T, Tokunaga, H, Ishibashi, M, Tokunaga, M, Kuroki, R.
Deposit date:2011-08-21
Release date:2012-07-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase
Protein Sci., 21, 2012
3VGS
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BU of 3vgs by Molmil
Wild-type nucleoside diphosphate kinase derived from Halomonas sp. 593
Descriptor: Nucleoside diphosphate kinase
Authors:Okazaki, N, Yonezawa, Y, Arai, S, Matsumoto, F, Tamada, T, Tokunaga, H, Ishibashi, M, Tokunaga, M, Kuroki, R.
Deposit date:2011-08-20
Release date:2012-07-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase
Protein Sci., 21, 2012
3VGT
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BU of 3vgt by Molmil
Wild-type nucleoside diphosphate kinase derived from Halomonas sp. 593
Descriptor: Nucleoside diphosphate kinase
Authors:Okazaki, N, Yonezawa, Y, Arai, S, Matsumoto, F, Tamada, T, Tokunaga, H, Ishibashi, M, Tokunaga, M, Kuroki, R.
Deposit date:2011-08-21
Release date:2012-07-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase
Protein Sci., 21, 2012
1V40
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BU of 1v40 by Molmil
First Inhibitor Complex Structure of Human Hematopoietic Prostaglandin D Synthase
Descriptor: 3-(1,3-BENZOTHIAZOL-2-YL)-2-(1,4-DIOXO-1,2,3,4-TETRAHYDROPHTHALAZIN-6-YL)-5-[(E)-2-PHENYLVINYL]-3H-TETRAAZOL-2-IUM, GLUTATHIONE, GLYCEROL, ...
Authors:Inoue, T, Okano, Y, Kado, Y, Aritake, K, Irikura, D, Uodome, N, Kinugasa, S, Okazaki, N, Matsumura, H, Kai, Y, Urade, Y.
Deposit date:2003-11-07
Release date:2004-11-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:First determination of the inhibitor complex structure of human hematopoietic prostaglandin D synthase.
J.Biochem.(Tokyo), 135, 2004
2EO8
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BU of 2eo8 by Molmil
Crystal structure of a mutant pyrrolidone carboxyl peptidase (A199P) from P. furiosus
Descriptor: Pyrrolidone-carboxylate peptidase
Authors:Sakamoto, K, Okazaki, N, Yutani, K.
Deposit date:2007-03-29
Release date:2007-10-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a mutant pyrrolidone carboxyl peptidase (A199P) from P. furiosus
To be Published
2ZYE
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BU of 2zye by Molmil
Structure of HIV-1 Protease in Complex with Potent Inhibitor KNI-272 Determined by Neutron Crystallography
Descriptor: (4R)-N-tert-butyl-3-[(2S,3S)-2-hydroxy-3-({N-[(isoquinolin-5-yloxy)acetyl]-S-methyl-L-cysteinyl}amino)-4-phenylbutanoyl]-1,3-thiazolidine-4-carboxamide, protease
Authors:Adachi, M, Ohhara, T, Tamada, T, Okazaki, N, Kuroki, R.
Deposit date:2009-01-20
Release date:2009-03-24
Last modified:2021-11-10
Method:NEUTRON DIFFRACTION (1.9 Å)
Cite:Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography.
Proc.Natl.Acad.Sci.USA, 2009
3FX5
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BU of 3fx5 by Molmil
Structure of HIV-1 Protease in Complex with Potent Inhibitor KNI-272 Determined by High Resolution X-ray Crystallography
Descriptor: (4R)-N-tert-butyl-3-[(2S,3S)-2-hydroxy-3-({N-[(isoquinolin-5-yloxy)acetyl]-S-methyl-L-cysteinyl}amino)-4-phenylbutanoyl]-1,3-thiazolidine-4-carboxamide, GLYCEROL, protease
Authors:Adachi, M, Ohhara, T, Tamada, T, Okazaki, N, Kuroki, R.
Deposit date:2009-01-20
Release date:2009-03-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (0.93 Å)
Cite:Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography.
Proc.Natl.Acad.Sci.USA, 2009
3W6D
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BU of 3w6d by Molmil
Crystal structure of catalytic domain of chitinase from Ralstonia sp. A-471 (E141Q) in complex with tetrasaccharide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Lysozyme-like chitinolytic enzyme
Authors:Arimori, T, Kawamoto, N, Okazaki, N, Nakazawa, M, Miyatake, K, Fukamizo, T, Ueda, M, Tamada, T.
Deposit date:2013-02-14
Release date:2013-05-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal Structures of the Catalytic Domain of a Novel Glycohydrolase Family 23 Chitinase from Ralstonia sp. A-471 Reveals a Unique Arrangement of the Catalytic Residues for Inverting Chitin Hydrolysis
J.Biol.Chem., 288, 2013
3W6E
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BU of 3w6e by Molmil
Crystal structure of catalytic domain of chitinase from Ralstonia sp. A-471 (E162Q)
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Lysozyme-like chitinolytic enzyme
Authors:Arimori, T, Kawamoto, N, Okazaki, N, Nakazawa, M, Miyatake, K, Fukamizo, T, Ueda, M, Tamada, T.
Deposit date:2013-02-14
Release date:2013-05-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystal Structures of the Catalytic Domain of a Novel Glycohydrolase Family 23 Chitinase from Ralstonia sp. A-471 Reveals a Unique Arrangement of the Catalytic Residues for Inverting Chitin Hydrolysis
J.Biol.Chem., 288, 2013
3W6B
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BU of 3w6b by Molmil
Crystal structure of catalytic domain of chitinase from Ralstonia sp. A-471
Descriptor: GLYCEROL, Lysozyme-like chitinolytic enzyme
Authors:Arimori, T, Kawamoto, N, Okazaki, N, Nakazawa, M, Miyatake, K, Fukamizo, T, Ueda, M, Tamada, T.
Deposit date:2013-02-14
Release date:2013-05-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of the Catalytic Domain of a Novel Glycohydrolase Family 23 Chitinase from Ralstonia sp. A-471 Reveals a Unique Arrangement of the Catalytic Residues for Inverting Chitin Hydrolysis
J.Biol.Chem., 288, 2013
3W6F
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BU of 3w6f by Molmil
Crystal structure of catalytic domain of chitinase from Ralstonia sp. A-471 (E162Q) in complex with disaccharide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Lysozyme-like chitinolytic enzyme
Authors:Arimori, T, Kawamoto, N, Okazaki, N, Nakazawa, M, Miyatake, K, Fukamizo, T, Ueda, M, Tamada, T.
Deposit date:2013-02-14
Release date:2013-05-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of the Catalytic Domain of a Novel Glycohydrolase Family 23 Chitinase from Ralstonia sp. A-471 Reveals a Unique Arrangement of the Catalytic Residues for Inverting Chitin Hydrolysis
J.Biol.Chem., 288, 2013
3W6C
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BU of 3w6c by Molmil
Crystal structure of catalytic domain of chitinase from Ralstonia sp. A-471 in complex with disaccharide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Lysozyme-like chitinolytic enzyme
Authors:Arimori, T, Kawamoto, N, Okazaki, N, Nakazawa, M, Miyatake, K, Fukamizo, T, Ueda, M, Tamada, T.
Deposit date:2013-02-14
Release date:2013-05-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of the Catalytic Domain of a Novel Glycohydrolase Family 23 Chitinase from Ralstonia sp. A-471 Reveals a Unique Arrangement of the Catalytic Residues for Inverting Chitin Hydrolysis
J.Biol.Chem., 288, 2013

 

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