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1N5X
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BU of 1n5x by Molmil
Xanthine Dehydrogenase from Bovine Milk with Inhibitor TEI-6720 Bound
Descriptor: 2-(3-CYANO-4-ISOBUTOXY-PHENYL)-4-METHYL-5-THIAZOLE-CARBOXYLIC ACID, DIOXOTHIOMOLYBDENUM(VI) ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Okamoto, K, Eger, B.T, Nishino, T, Kondo, S, Pai, E.F, Nishino, T.
Deposit date:2002-11-07
Release date:2003-03-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:An Extremely Potent Inhibitor of Xanthine Oxidoreductase: Crystal Structure of the Enzyme-Inhibitor Complex and Mechanism of Inhibition
J.BIOL.CHEM., 278, 2003
6S2C
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BU of 6s2c by Molmil
Acquired functional capsid structures in metazoan totivirus-like dsRNA virus.
Descriptor: Capsid protein
Authors:Okamoto, K, Larsson, S.D.D, Maia, R.N.C.F, Murata, K, Hajdu, J, Iwasaki, K, Miyazaki, N.
Deposit date:2019-06-20
Release date:2020-04-29
Last modified:2020-08-19
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus.
Structure, 28, 2020
8J79
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BU of 8j79 by Molmil
Bovine Xanthine Oxidoreductase Crystallized with oxypurinol
Descriptor: CALCIUM ION, CARBONATE ION, DIOXOTHIOMOLYBDENUM(VI) ION, ...
Authors:Okamoto, K, Sekine, M.
Deposit date:2023-04-27
Release date:2023-05-24
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Bovine Xanthine Oxidoreductase Crystallized with oxypurinol
To Be Published
1V97
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BU of 1v97 by Molmil
Crystal Structure of Bovine Milk Xanthine Dehydrogenase FYX-051 bound form
Descriptor: 4-(5-PYRIDIN-4-YL-1H-1,2,4-TRIAZOL-3-YL)PYRIDINE-2-CARBONITRILE, ACETIC ACID, CALCIUM ION, ...
Authors:Okamoto, K, Matsumoto, K, Hille, R, Eger, B.T, Pai, E.F, Nishino, T.
Deposit date:2004-01-21
Release date:2004-06-22
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:The crystal structure of xanthine oxidoreductase during catalysis: Implications for reaction mechanism and enzyme inhibition.
Proc.Natl.Acad.Sci.USA, 101, 2004
6ABU
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BU of 6abu by Molmil
Rat Xanthine oxidoreductase, NAD bound form
Descriptor: BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Okamoto, K, Kawaguchi, Y.
Deposit date:2018-07-24
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Rat Xanthine oxidoreductase, NAD bound form
To Be Published
6A7X
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BU of 6a7x by Molmil
Rat Xanthine oxidoreductase, D428A variant, NAD bound form
Descriptor: BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Okamoto, K, Kawaguchi, Y.
Deposit date:2018-07-05
Release date:2019-07-24
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Rat Xanthine oxidoreductase, D428A variant, NAD bound form
To Be Published
6ADJ
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BU of 6adj by Molmil
Rat Xanthine oxidoreductase, D428E variant
Descriptor: CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Okamoto, K, Kawaguchi, Y.
Deposit date:2018-08-01
Release date:2019-08-07
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Rat Xanthine oxidoreductase, D428A variant, NAD bound form
To Be Published
6AC1
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BU of 6ac1 by Molmil
Rat Xanthine oxidoreductase, NADH bound form
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Okamoto, K, Kawaguchi, Y.
Deposit date:2018-07-24
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Rat Xanthine oxidoreductase, D428A variant, NAD bound form
To Be Published
6AC4
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BU of 6ac4 by Molmil
Rat Xanthine oxidoreductase, D428N variant
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, Xanthine dehydrogenase/oxidase
Authors:Okamoto, K, Kawaguchi, Y.
Deposit date:2018-07-25
Release date:2019-08-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Rat Xanthine oxidoreductase, D428A variant, NAD bound form
To Be Published
6AD4
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BU of 6ad4 by Molmil
Rat Xanthine oxidoreductase, D428A variant, NADH bound form
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Okamoto, K, Kawaguchi, Y.
Deposit date:2018-07-30
Release date:2019-07-31
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Rat Xanthine oxidoreductase, D428A variant, NAD bound form
To Be Published
6AJU
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BU of 6aju by Molmil
Rat Xanthine oxidoreductase
Descriptor: BICARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Okamoto, K, Kawaguchi, Y.
Deposit date:2018-08-28
Release date:2019-09-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Rat Xanthine oxidoreductase, D428A variant, NAD bound form
To Be Published
3WZE
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BU of 3wze by Molmil
KDR in complex with ligand sorafenib
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 4-{4-[({[4-CHLORO-3-(TRIFLUOROMETHYL)PHENYL]AMINO}CARBONYL)AMINO]PHENOXY}-N-METHYLPYRIDINE-2-CARBOXAMIDE, ACETATE ION, ...
Authors:Okamoto, K, Ikemori_Kawada, M, Inoue, A, Matsui, J.
Deposit date:2014-09-24
Release date:2015-05-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Distinct binding mode of multikinase inhibitor lenvatinib revealed by biochemical characterization.
ACS MED.CHEM.LETT., 6, 2015
3WZD
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BU of 3wzd by Molmil
KDR in complex with ligand lenvatinib
Descriptor: 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 4-{3-chloro-4-[(cyclopropylcarbamoyl)amino]phenoxy}-7-methoxyquinoline-6-carboxamide, ...
Authors:Okamoto, K, Ikemori_Kawada, M, Inoue, A, Matsui, J.
Deposit date:2014-09-24
Release date:2015-05-27
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Distinct binding mode of multikinase inhibitor lenvatinib revealed by biochemical characterization.
ACS MED.CHEM.LETT., 6, 2015
3AMZ
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BU of 3amz by Molmil
Bovine Xanthine Oxidoreductase urate bound form
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, BICARBONATE ION, CALCIUM ION, ...
Authors:Okamoto, K, Eger, B.T, Pai, E.F, Nishino, T.
Deposit date:2010-08-27
Release date:2010-12-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal Structures of Urate Bound Form of Xanthine Oxidoreductase: Substrate Orientation and Structure of the Key Reaction Intermediate
J.Am.Chem.Soc., 132, 2010
3AN1
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BU of 3an1 by Molmil
Crystal structure of rat D428A mutant, urate bound form
Descriptor: BICARBONATE ION, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Okamoto, K, Kawaguchi, Y, Eger, B.T, Pai, E.F, Nishino, T.
Deposit date:2010-08-27
Release date:2010-12-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal Structures of Urate Bound Form of Xanthine Oxidoreductase: Substrate Orientation and Structure of the Key Reaction Intermediate
J.Am.Chem.Soc., 132, 2010
3BDJ
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BU of 3bdj by Molmil
Crystal Structure of Bovine Milk Xanthine Dehydrogenase with a Covalently Bound Oxipurinol Inhibitor
Descriptor: CALCIUM ION, CARBONATE ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Eger, B.T, Okamoto, K, Nishino, T, Pai, E.F, Nishino, T.
Deposit date:2007-11-14
Release date:2008-11-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanism of inhibition of xanthine oxidoreductase by allopurinol: crystal structure of reduced bovine milk xanthine oxidoreductase bound with oxipurinol.
Nucleosides Nucleotides Nucleic Acids, 27, 2008
2Z5E
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BU of 2z5e by Molmil
Crystal Structure of Proteasome Assembling Chaperone 3
Descriptor: Proteasome Assembling Chaperone 3
Authors:Okamoto, K, Kurimoto, E, Sakata, E, Suzuki, A, Yamane, T, Hirano, Y, Murata, S, Tanaka, K, Kato, K.
Deposit date:2007-07-06
Release date:2008-02-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes
Nat.Struct.Mol.Biol., 15, 2008
4YRW
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BU of 4yrw by Molmil
rat xanthine oxidoreductase, C-terminal deletion protein variant
Descriptor: BICARBONATE ION, CALCIUM ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Okamoto, K.
Deposit date:2015-03-16
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:The C-terminal peptide plays a role in the formation of an intermediate form during the transition between xanthine dehydrogenase and xanthine oxidase
Febs J., 282, 2015
7NS0
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BU of 7ns0 by Molmil
Bacilladnavirus capsid structure
Descriptor: Capsid protein VP2
Authors:Munke, A, Okamoto, K.
Deposit date:2021-03-05
Release date:2022-07-20
Last modified:2022-09-14
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Primordial Capsid and Spooled ssDNA Genome Structures Unravel Ancestral Events of Eukaryotic Viruses.
Mbio, 13, 2022
6SHL
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BU of 6shl by Molmil
Structure of a marine algae virus of the order Picornavirales
Descriptor: VP1, VP2, VP3, ...
Authors:Munke, A, Tomaru, Y, Kimura, K, Okamoto, K.
Deposit date:2019-08-07
Release date:2020-02-12
Last modified:2020-09-30
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Capsid Structure of a Marine Algal Virus of the Order Picornavirales .
J.Virol., 94, 2020
8B38
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BU of 8b38 by Molmil
Chaetoceros socialis forma radians RNA virus 1 full capsid atomic model
Descriptor: Structural polyprotein
Authors:Wang, H, Okamoto, K, Munke, A.
Deposit date:2022-09-16
Release date:2022-11-23
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural Insights into Common and Host-Specific Receptor-Binding Mechanisms in Algal Picorna-like Viruses.
Viruses, 14, 2022
8B3J
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BU of 8b3j by Molmil
Chaetoceros socialis forma radians RNA virus 1 empty capsid atomic model
Descriptor: Structural polyprotein
Authors:Wang, H, Okamoto, K, Munke, A.
Deposit date:2022-09-16
Release date:2022-11-23
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural Insights into Common and Host-Specific Receptor-Binding Mechanisms in Algal Picorna-like Viruses.
Viruses, 14, 2022
8B4Z
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BU of 8b4z by Molmil
Rosellinia necatrix megabirnavirus 1-W779 full capsid
Descriptor: Major capsid protein A
Authors:Wang, H, Okamoto, K, Miyazaki, N, Suzuki, N.
Deposit date:2022-09-21
Release date:2023-02-22
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Capsid structure of a fungal dsRNA megabirnavirus reveals its previously unidentified surface architecture.
Plos Pathog., 19, 2023
8B59
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BU of 8b59 by Molmil
Rosellinia necatrix megabirnavirus 1-W779 Crown protein
Descriptor: RnMBV1 Crown protein
Authors:Wang, H, Okamoto, K, Miyazaki, N, Suzuki, N.
Deposit date:2022-09-22
Release date:2023-02-22
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Capsid structure of a fungal dsRNA megabirnavirus reveals its previously unidentified surface architecture.
Plos Pathog., 19, 2023
3HJR
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BU of 3hjr by Molmil
Crystal structure of serine protease of Aeromonas sobria
Descriptor: CALCIUM ION, Extracellular serine protease
Authors:Utsunomiya, H, Tsuge, H, Kobayashi, H, Okamoto, K.
Deposit date:2009-05-22
Release date:2009-06-02
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural basis for the kexin-like serine protease from Aeromonas sobria as a sepsis-causing factor
J.Biol.Chem., 284, 2009

 

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