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3A9I
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BU of 3a9i by Molmil
Crystal structure of homocitrate synthase from Thermus thermophilus complexed with Lys
Descriptor: COBALT (II) ION, Homocitrate synthase, LYSINE
Authors:Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2009-10-28
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus
J.Biol.Chem., 285, 2010
1L9H
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BU of 1l9h by Molmil
Crystal structure of bovine rhodopsin at 2.6 angstroms RESOLUTION
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEPTANE-1,2,3-TRIOL, MERCURY (II) ION, ...
Authors:Okada, T, Fujiyoshi, Y, Silow, M, Navarro, J, Landau, E.M, Shichida, Y.
Deposit date:2002-03-23
Release date:2002-05-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography.
Proc.Natl.Acad.Sci.USA, 99, 2002
2ZTK
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BU of 2ztk by Molmil
Crystal structure of homocitrate synthase from Thermus thermophilus complexed with homocitrate
Descriptor: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, COPPER (II) ION, Homocitrate synthase
Authors:Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2008-10-06
Release date:2009-10-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus
J.Biol.Chem., 285, 2010
2ZTJ
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BU of 2ztj by Molmil
Crystal structure of homocitrate synthase from Thermus thermophilus complexed with alpha-ketoglutarate
Descriptor: 2-OXOGLUTARIC ACID, COPPER (II) ION, Homocitrate synthase
Authors:Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2008-10-06
Release date:2009-10-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus
J.Biol.Chem., 285, 2010
2ZYF
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BU of 2zyf by Molmil
Crystal structure of homocitrate synthase from Thermus thermophilus complexed with magnesuim ion and alpha-ketoglutarate
Descriptor: 2-OXOGLUTARIC ACID, Homocitrate synthase, MAGNESIUM ION
Authors:Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M.
Deposit date:2009-01-20
Release date:2009-12-22
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from thermus thermophilus
J.Biol.Chem., 2009
7YRO
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BU of 7yro by Molmil
Crystal structure of mango fucosyltransferase 13
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETIC ACID, Fucosyltransferase, ...
Authors:Okada, T, Teramoto, T, Ihara, H, Ikeda, Y, Kakuta, Y.
Deposit date:2022-08-10
Release date:2023-08-16
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Crystal structure of mango alpha1,3/alpha1,4-fucosyltransferase elucidates unique elements strictly regulating its type I-dominant acceptor preference
To Be Published
2E0Y
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BU of 2e0y by Molmil
Crystal structure of the samarium derivative of mature gamma-glutamyltranspeptidase from Escherichia coli
Descriptor: GLYCEROL, Gamma-glutamyltranspeptidase, SAMARIUM (III) ION
Authors:Okada, T, Wada, K, Fukuyama, K.
Deposit date:2006-10-16
Release date:2006-11-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
J.Biol.Chem., 282, 2007
2E0X
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BU of 2e0x by Molmil
Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli (monoclinic form)
Descriptor: CALCIUM ION, Gamma-glutamyltranspeptidase
Authors:Okada, T, Wada, K, Fukuyama, K.
Deposit date:2006-10-16
Release date:2006-11-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
J.Biol.Chem., 282, 2007
2E0W
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BU of 2e0w by Molmil
T391A precursor mutant protein of gamma-Glutamyltranspeptidase from Escherichia coli
Descriptor: Gamma-glutamyltranspeptidase
Authors:Okada, T, Wada, K, Fukuyama, K.
Deposit date:2006-10-16
Release date:2006-11-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism
J.Biol.Chem., 282, 2007
1U19
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BU of 1u19 by Molmil
Crystal Structure of Bovine Rhodopsin at 2.2 Angstroms Resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEPTANE-1,2,3-TRIOL, MERCURY (II) ION, ...
Authors:Okada, T, Sugihara, M, Bondar, A.N, Elstner, M, Entel, P, Buss, V.
Deposit date:2004-07-15
Release date:2004-10-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure
J.Mol.Biol., 342, 2004
2DBW
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BU of 2dbw by Molmil
Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli Acyl-Enzyme Intermediate
Descriptor: GAMMA-L-GLUTAMIC ACID, GLYCEROL, Gamma-glutamyltranspeptidase
Authors:Okada, T, Wada, K, Fukuyama, K.
Deposit date:2005-12-16
Release date:2006-04-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate
Proc.Natl.Acad.Sci.USA, 103, 2006
2DBX
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BU of 2dbx by Molmil
Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli Complexed with L-Glutamate
Descriptor: CALCIUM ION, GLUTAMIC ACID, GLYCEROL, ...
Authors:Okada, T, Wada, K, Fukuyama, K.
Deposit date:2005-12-16
Release date:2006-04-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2DBU
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BU of 2dbu by Molmil
Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli
Descriptor: Gamma-glutamyltranspeptidase
Authors:Okada, T, Wada, K, Fukuyama, K.
Deposit date:2005-12-16
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2DG5
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BU of 2dg5 by Molmil
Crystal Structure of Gamma-glutamyl transpeptidase from Escherichia coli in complex with hydrolyzed Glutathione
Descriptor: CALCIUM ION, GLUTAMIC ACID, GLYCEROL, ...
Authors:Okada, T, Wada, K, Fukuyama, K.
Deposit date:2006-03-08
Release date:2006-04-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.
Proc.Natl.Acad.Sci.Usa, 103, 2006
1F88
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BU of 1f88 by Molmil
CRYSTAL STRUCTURE OF BOVINE RHODOPSIN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MERCURY (II) ION, RETINAL, ...
Authors:Okada, T, Palczewski, K, Stenkamp, R.E, Miyano, M.
Deposit date:2000-06-29
Release date:2000-08-04
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of rhodopsin: A G protein-coupled receptor.
Science, 289, 2000
1BM1
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BU of 1bm1 by Molmil
CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN THE LIGHT-ADAPTED STATE
Descriptor: BACTERIORHODOPSIN, PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER, RETINAL
Authors:Sato, H, Takeda, K, Tani, K, Hino, T, Okada, T, Nakasako, M, Kamiya, N, Kouyama, T.
Deposit date:1998-07-28
Release date:1999-04-27
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Specific lipid-protein interactions in a novel honeycomb lattice structure of bacteriorhodopsin.
Acta Crystallogr.,Sect.D, 55, 1999
3OAX
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BU of 3oax by Molmil
Crystal structure of bovine rhodopsin with beta-ionone
Descriptor: (3E)-4-(2,6,6-trimethylcyclohex-1-en-1-yl)but-3-en-2-one, (4E,6E)-hexadeca-1,4,6-triene, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Makino, C.L, Riley, C.K, Looney, J, Crouch, R.K, Okada, T.
Deposit date:2010-08-05
Release date:2011-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Binding of more than one retinoid to visual opsins
Biophys.J., 99, 2010
1ED7
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BU of 1ed7 by Molmil
SOLUTION STRUCTURE OF THE CHITIN-BINDING DOMAIN OF BACILLUS CIRCULANS WL-12 CHITINASE A1
Descriptor: CHITINASE A1
Authors:Ikegami, T, Okada, T, Hashimoto, M, Seino, S, Watanabe, T, Shirakawa, M.
Deposit date:2000-01-27
Release date:2000-05-24
Last modified:2022-02-16
Method:SOLUTION NMR
Cite:Solution structure of the chitin-binding domain of Bacillus circulans WL-12 chitinase A1.
J.Biol.Chem., 275, 2000
1FR0
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BU of 1fr0 by Molmil
SOLUTION STRUCTURE OF THE HISTIDINE-CONTAINING PHOSPHOTRANSFER DOMAIN OF ANAEROBIC SENSOR KINASE ARCB FROM ESCHERICHIA COLI.
Descriptor: ARCB
Authors:Ikegami, T, Okada, T, Ohki, I, Hirayama, J, Mizuno, T, Shirakawa, M.
Deposit date:2000-09-07
Release date:2001-03-14
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure and dynamic character of the histidine-containing phosphotransfer domain of anaerobic sensor kinase ArcB from Escherichia coli.
Biochemistry, 40, 2001
2G87
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BU of 2g87 by Molmil
Crystallographic model of bathorhodopsin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEPTANE-1,2,3-TRIOL, MERCURY (II) ION, ...
Authors:Nakamichi, H, Okada, T.
Deposit date:2006-03-02
Release date:2006-09-02
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystallographic analysis of primary visual photochemistry
Angew.Chem.Int.Ed.Engl., 45, 2006
6LT5
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BU of 6lt5 by Molmil
Lysozyme protected by alginate gel
Descriptor: CHLORIDE ION, GLYCEROL, Lysozyme C, ...
Authors:Tomoike, F, Morita, S, Nagae, T, Okada, T.
Deposit date:2020-01-21
Release date:2021-01-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Post-crystallization protection of protein crystals
To Be Published
2PED
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BU of 2ped by Molmil
Crystallographic model of 9-cis-rhodopsin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEPTANE-1,2,3-TRIOL, MERCURY (II) ION, ...
Authors:Nakamichi, H, Okada, T.
Deposit date:2007-04-02
Release date:2007-10-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Photoisomerization mechanism of rhodopsin and 9-cis-rhodopsin revealed by x-ray crystallography
Biophys.J., 92, 2007
7VCG
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BU of 7vcg by Molmil
Thaumatin protected by alginate gel
Descriptor: GLYCEROL, L(+)-TARTARIC ACID, Thaumatin I
Authors:Muroyama, H, Tomoike, F, Nagae, T, Okada, T.
Deposit date:2021-09-03
Release date:2022-09-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Post-crystallization protection of protein crystals
to be published
2HPY
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BU of 2hpy by Molmil
Crystallographic model of lumirhodopsin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEPTANE-1,2,3-TRIOL, MERCURY (II) ION, ...
Authors:Nakamichi, H, Okada, T.
Deposit date:2006-07-18
Release date:2006-08-22
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Local peptide movement in the photoreaction intermediate of rhodopsin
Proc.Natl.Acad.Sci.Usa, 103, 2006
7WXT
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BU of 7wxt by Molmil
Thaumatin protected by polyacrylamide gel
Descriptor: GLYCEROL, L(+)-TARTARIC ACID, Thaumatin I
Authors:Muroyama, H, Tomoike, F, Nagae, T, Okada, T.
Deposit date:2022-02-15
Release date:2023-02-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Post-crystallization protection of protein crystals by polyacrylamide
To Be Published

 

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